Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1757 and Pf6N2E2_1758 are separated by 83 nucleotides Pf6N2E2_1758 and Pf6N2E2_1759 are separated by 8 nucleotides Pf6N2E2_1759 and Pf6N2E2_1760 are separated by 103 nucleotides
Pf6N2E2_1757 - glutamine ABC transporter ATP-binding component, at 2,075,520 to 2,077,028
_1757
Pf6N2E2_1758 - Transcriptional regulator, MarR family, at 2,077,112 to 2,077,567
_1758
Pf6N2E2_1759 - uncharacterized domain 1, at 2,077,576 to 2,078,187
_1759
Pf6N2E2_1760 - Oxidoreductase, at 2,078,291 to 2,079,295
_1760
Position (kb)
2077
2078 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2076.120 kb on + strand, within Pf6N2E2_1757 at 2076.120 kb on + strand, within Pf6N2E2_1757 at 2076.121 kb on - strand, within Pf6N2E2_1757 at 2076.123 kb on + strand, within Pf6N2E2_1757 at 2076.123 kb on + strand, within Pf6N2E2_1757 at 2076.123 kb on + strand, within Pf6N2E2_1757 at 2076.123 kb on + strand, within Pf6N2E2_1757 at 2076.124 kb on - strand, within Pf6N2E2_1757 at 2076.376 kb on + strand, within Pf6N2E2_1757 at 2076.377 kb on - strand, within Pf6N2E2_1757 at 2076.377 kb on - strand, within Pf6N2E2_1757 at 2076.377 kb on - strand, within Pf6N2E2_1757 at 2076.492 kb on + strand, within Pf6N2E2_1757 at 2076.493 kb on - strand, within Pf6N2E2_1757 at 2076.493 kb on - strand, within Pf6N2E2_1757 at 2076.495 kb on - strand, within Pf6N2E2_1757 at 2076.801 kb on - strand, within Pf6N2E2_1757 at 2077.037 kb on + strand at 2077.038 kb on - strand at 2077.376 kb on - strand, within Pf6N2E2_1758 at 2077.450 kb on - strand, within Pf6N2E2_1758 at 2077.558 kb on + strand at 2077.558 kb on + strand at 2077.572 kb on + strand at 2077.867 kb on + strand, within Pf6N2E2_1759 at 2077.868 kb on - strand, within Pf6N2E2_1759 at 2078.111 kb on - strand, within Pf6N2E2_1759 at 2078.261 kb on + strand at 2078.298 kb on - strand at 2078.298 kb on - strand at 2078.417 kb on + strand, within Pf6N2E2_1760 at 2078.459 kb on + strand, within Pf6N2E2_1760 at 2078.460 kb on - strand, within Pf6N2E2_1760 at 2078.537 kb on + strand, within Pf6N2E2_1760 at 2078.537 kb on + strand, within Pf6N2E2_1760 at 2078.538 kb on - strand, within Pf6N2E2_1760
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 2,076,120 + Pf6N2E2_1757 0.40 -0.6 2,076,120 + Pf6N2E2_1757 0.40 -0.3 2,076,121 - Pf6N2E2_1757 0.40 +2.3 2,076,123 + Pf6N2E2_1757 0.40 -1.7 2,076,123 + Pf6N2E2_1757 0.40 -2.4 2,076,123 + Pf6N2E2_1757 0.40 -1.3 2,076,123 + Pf6N2E2_1757 0.40 -0.4 2,076,124 - Pf6N2E2_1757 0.40 +1.5 2,076,376 + Pf6N2E2_1757 0.57 -1.3 2,076,377 - Pf6N2E2_1757 0.57 -0.1 2,076,377 - Pf6N2E2_1757 0.57 +0.5 2,076,377 - Pf6N2E2_1757 0.57 +2.0 2,076,492 + Pf6N2E2_1757 0.64 -0.7 2,076,493 - Pf6N2E2_1757 0.64 -0.0 2,076,493 - Pf6N2E2_1757 0.64 -0.7 2,076,495 - Pf6N2E2_1757 0.65 +1.2 2,076,801 - Pf6N2E2_1757 0.85 +0.3 2,077,037 + -0.8 2,077,038 - -0.2 2,077,376 - Pf6N2E2_1758 0.58 -0.7 2,077,450 - Pf6N2E2_1758 0.74 -2.9 2,077,558 + +0.5 2,077,558 + +0.9 2,077,572 + -1.1 2,077,867 + Pf6N2E2_1759 0.48 +1.6 2,077,868 - Pf6N2E2_1759 0.48 -0.4 2,078,111 - Pf6N2E2_1759 0.87 +2.9 2,078,261 + -1.0 2,078,298 - +1.7 2,078,298 - -0.5 2,078,417 + Pf6N2E2_1760 0.13 +0.0 2,078,459 + Pf6N2E2_1760 0.17 +1.5 2,078,460 - Pf6N2E2_1760 0.17 -0.9 2,078,537 + Pf6N2E2_1760 0.24 +1.5 2,078,537 + Pf6N2E2_1760 0.24 -0.4 2,078,538 - Pf6N2E2_1760 0.25 +0.2
Or see this region's nucleotide sequence