Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_843

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_842 and Pf6N2E2_843 overlap by 4 nucleotidesPf6N2E2_843 and Pf6N2E2_844 are separated by 90 nucleotides Pf6N2E2_842 - Haloacid dehalogenase, type II (EC 3.8.1.2), at 986,859 to 987,566 _842 Pf6N2E2_843 - Phosphoglycolate phosphatase, archaeal type (EC 3.1.3.18), at 987,563 to 989,320 _843 Pf6N2E2_844 - Ribose-phosphate pyrophosphokinase (EC 2.7.6.1), at 989,411 to 990,403 _844 Position (kb) 987 988 989 990Strain fitness (log2 ratio) -2 -1 0 1 2at 986.594 kb on + strandat 986.594 kb on + strandat 986.598 kb on + strandat 986.599 kb on - strandat 986.599 kb on - strandat 986.735 kb on + strandat 986.735 kb on + strandat 986.735 kb on + strandat 986.735 kb on + strandat 986.735 kb on + strandat 986.736 kb on - strandat 986.737 kb on + strandat 986.737 kb on + strandat 986.774 kb on - strandat 986.779 kb on + strandat 986.779 kb on + strandat 986.779 kb on + strandat 986.779 kb on + strandat 986.780 kb on - strandat 986.837 kb on + strandat 986.837 kb on + strandat 986.837 kb on + strandat 986.837 kb on + strandat 986.838 kb on - strandat 986.838 kb on - strandat 986.838 kb on - strandat 986.838 kb on - strandat 986.841 kb on + strandat 986.841 kb on + strandat 986.842 kb on - strandat 987.006 kb on + strand, within Pf6N2E2_842at 987.006 kb on + strand, within Pf6N2E2_842at 987.006 kb on + strand, within Pf6N2E2_842at 987.006 kb on + strand, within Pf6N2E2_842at 987.007 kb on - strand, within Pf6N2E2_842at 987.102 kb on + strand, within Pf6N2E2_842at 987.103 kb on - strand, within Pf6N2E2_842at 987.222 kb on - strand, within Pf6N2E2_842at 987.328 kb on - strand, within Pf6N2E2_842at 987.348 kb on + strand, within Pf6N2E2_842at 987.348 kb on + strand, within Pf6N2E2_842at 987.349 kb on - strand, within Pf6N2E2_842at 987.349 kb on - strand, within Pf6N2E2_842at 987.456 kb on + strand, within Pf6N2E2_842at 987.456 kb on + strand, within Pf6N2E2_842at 987.456 kb on + strand, within Pf6N2E2_842at 987.457 kb on - strand, within Pf6N2E2_842at 987.457 kb on - strand, within Pf6N2E2_842at 987.457 kb on - strand, within Pf6N2E2_842at 987.478 kb on - strand, within Pf6N2E2_842at 987.557 kb on + strandat 987.557 kb on + strandat 987.557 kb on + strandat 987.558 kb on - strandat 987.558 kb on - strandat 987.558 kb on - strandat 987.558 kb on - strandat 987.558 kb on - strandat 987.558 kb on - strandat 987.564 kb on + strandat 987.564 kb on + strandat 987.564 kb on + strandat 987.565 kb on - strandat 987.565 kb on - strandat 987.565 kb on - strandat 987.565 kb on - strandat 987.565 kb on - strandat 987.565 kb on - strandat 987.733 kb on + strandat 987.734 kb on - strandat 987.734 kb on - strandat 987.734 kb on - strandat 987.734 kb on - strandat 987.796 kb on + strand, within Pf6N2E2_843at 987.796 kb on + strand, within Pf6N2E2_843at 987.796 kb on + strand, within Pf6N2E2_843at 987.796 kb on + strand, within Pf6N2E2_843at 987.796 kb on + strand, within Pf6N2E2_843at 987.796 kb on + strand, within Pf6N2E2_843at 987.796 kb on + strand, within Pf6N2E2_843at 987.796 kb on + strand, within Pf6N2E2_843at 987.796 kb on + strand, within Pf6N2E2_843at 987.797 kb on - strand, within Pf6N2E2_843at 987.797 kb on - strand, within Pf6N2E2_843at 987.797 kb on - strand, within Pf6N2E2_843at 987.797 kb on - strand, within Pf6N2E2_843at 987.797 kb on - strand, within Pf6N2E2_843at 987.797 kb on - strand, within Pf6N2E2_843at 987.797 kb on - strand, within Pf6N2E2_843at 987.906 kb on - strand, within Pf6N2E2_843at 987.906 kb on - strand, within Pf6N2E2_843at 987.921 kb on + strand, within Pf6N2E2_843at 987.921 kb on + strand, within Pf6N2E2_843at 987.922 kb on - strand, within Pf6N2E2_843at 987.922 kb on - strand, within Pf6N2E2_843at 987.922 kb on - strand, within Pf6N2E2_843at 987.922 kb on - strand, within Pf6N2E2_843at 987.922 kb on - strand, within Pf6N2E2_843at 987.922 kb on - strand, within Pf6N2E2_843at 987.995 kb on + strand, within Pf6N2E2_843at 987.995 kb on + strand, within Pf6N2E2_843at 987.995 kb on + strand, within Pf6N2E2_843at 987.996 kb on - strand, within Pf6N2E2_843at 987.996 kb on - strand, within Pf6N2E2_843at 987.996 kb on - strand, within Pf6N2E2_843at 987.996 kb on - strand, within Pf6N2E2_843at 987.997 kb on + strand, within Pf6N2E2_843at 987.997 kb on + strand, within Pf6N2E2_843at 987.998 kb on - strand, within Pf6N2E2_843at 988.061 kb on + strand, within Pf6N2E2_843at 988.061 kb on + strand, within Pf6N2E2_843at 988.061 kb on + strand, within Pf6N2E2_843at 988.061 kb on + strand, within Pf6N2E2_843at 988.062 kb on - strand, within Pf6N2E2_843at 988.062 kb on - strand, within Pf6N2E2_843at 988.149 kb on - strand, within Pf6N2E2_843at 988.233 kb on + strand, within Pf6N2E2_843at 988.233 kb on + strand, within Pf6N2E2_843at 988.233 kb on + strand, within Pf6N2E2_843at 988.233 kb on + strand, within Pf6N2E2_843at 988.234 kb on - strand, within Pf6N2E2_843at 988.304 kb on + strand, within Pf6N2E2_843at 988.305 kb on - strand, within Pf6N2E2_843at 988.367 kb on - strand, within Pf6N2E2_843at 988.379 kb on + strand, within Pf6N2E2_843at 988.380 kb on - strand, within Pf6N2E2_843at 988.458 kb on + strand, within Pf6N2E2_843at 988.788 kb on - strand, within Pf6N2E2_843at 989.042 kb on + strand, within Pf6N2E2_843at 989.042 kb on + strand, within Pf6N2E2_843at 989.042 kb on + strand, within Pf6N2E2_843at 989.042 kb on + strand, within Pf6N2E2_843at 989.101 kb on + strand, within Pf6N2E2_843at 989.109 kb on + strand, within Pf6N2E2_843at 989.109 kb on + strand, within Pf6N2E2_843at 989.207 kb on + strandat 989.207 kb on + strandat 989.207 kb on + strandat 989.208 kb on - strandat 989.320 kb on + strandat 989.320 kb on + strandat 989.320 kb on + strandat 989.321 kb on - strandat 989.321 kb on - strandat 989.611 kb on + strand, within Pf6N2E2_844at 989.612 kb on - strand, within Pf6N2E2_844at 989.812 kb on + strand, within Pf6N2E2_844at 989.813 kb on - strand, within Pf6N2E2_844at 989.885 kb on + strand, within Pf6N2E2_844at 989.885 kb on + strand, within Pf6N2E2_844at 989.885 kb on + strand, within Pf6N2E2_844at 989.886 kb on - strand, within Pf6N2E2_844at 989.886 kb on - strand, within Pf6N2E2_844at 989.886 kb on - strand, within Pf6N2E2_844at 989.886 kb on - strand, within Pf6N2E2_844at 990.055 kb on - strand, within Pf6N2E2_844at 990.055 kb on - strand, within Pf6N2E2_844at 990.114 kb on + strand, within Pf6N2E2_844at 990.220 kb on - strand, within Pf6N2E2_844at 990.220 kb on - strand, within Pf6N2E2_844at 990.236 kb on + strand, within Pf6N2E2_844at 990.294 kb on + strand, within Pf6N2E2_844at 990.295 kb on - strand, within Pf6N2E2_844at 990.295 kb on - strand, within Pf6N2E2_844at 990.295 kb on - strand, within Pf6N2E2_844

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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986,594 + +0.3
986,594 + +1.0
986,598 + -0.7
986,599 - -0.2
986,599 - +1.0
986,735 + -1.6
986,735 + -0.0
986,735 + -0.1
986,735 + +0.0
986,735 + +0.1
986,736 - -0.3
986,737 + +0.2
986,737 + +0.0
986,774 - -0.2
986,779 + -0.7
986,779 + -1.2
986,779 + +0.8
986,779 + +1.0
986,780 - +0.2
986,837 + +0.4
986,837 + +0.3
986,837 + -0.3
986,837 + +0.9
986,838 - -1.3
986,838 - -0.3
986,838 - -0.1
986,838 - +0.5
986,841 + +0.3
986,841 + +0.8
986,842 - -0.5
987,006 + Pf6N2E2_842 0.21 +0.9
987,006 + Pf6N2E2_842 0.21 -0.1
987,006 + Pf6N2E2_842 0.21 +0.8
987,006 + Pf6N2E2_842 0.21 +0.2
987,007 - Pf6N2E2_842 0.21 +1.1
987,102 + Pf6N2E2_842 0.34 +0.1
987,103 - Pf6N2E2_842 0.34 -0.8
987,222 - Pf6N2E2_842 0.51 -0.6
987,328 - Pf6N2E2_842 0.66 -1.1
987,348 + Pf6N2E2_842 0.69 +0.4
987,348 + Pf6N2E2_842 0.69 +0.7
987,349 - Pf6N2E2_842 0.69 +0.9
987,349 - Pf6N2E2_842 0.69 -2.6
987,456 + Pf6N2E2_842 0.84 +0.4
987,456 + Pf6N2E2_842 0.84 -0.1
987,456 + Pf6N2E2_842 0.84 +0.3
987,457 - Pf6N2E2_842 0.84 +0.5
987,457 - Pf6N2E2_842 0.84 -1.0
987,457 - Pf6N2E2_842 0.84 +0.7
987,478 - Pf6N2E2_842 0.87 +0.4
987,557 + -0.9
987,557 + +0.4
987,557 + +0.8
987,558 - +0.6
987,558 - -2.1
987,558 - +0.3
987,558 - -2.2
987,558 - +1.2
987,558 - +0.5
987,564 + +1.5
987,564 + -0.8
987,564 + +0.4
987,565 - +1.3
987,565 - +0.5
987,565 - +0.9
987,565 - -0.8
987,565 - -1.1
987,565 - +1.3
987,733 + -0.8
987,734 - -1.1
987,734 - -0.5
987,734 - -0.2
987,734 - -2.1
987,796 + Pf6N2E2_843 0.13 -0.6
987,796 + Pf6N2E2_843 0.13 -0.9
987,796 + Pf6N2E2_843 0.13 -0.1
987,796 + Pf6N2E2_843 0.13 -0.3
987,796 + Pf6N2E2_843 0.13 -0.7
987,796 + Pf6N2E2_843 0.13 -0.1
987,796 + Pf6N2E2_843 0.13 -1.1
987,796 + Pf6N2E2_843 0.13 +0.2
987,796 + Pf6N2E2_843 0.13 -1.4
987,797 - Pf6N2E2_843 0.13 +0.6
987,797 - Pf6N2E2_843 0.13 -1.0
987,797 - Pf6N2E2_843 0.13 -2.5
987,797 - Pf6N2E2_843 0.13 +0.1
987,797 - Pf6N2E2_843 0.13 +0.1
987,797 - Pf6N2E2_843 0.13 -1.6
987,797 - Pf6N2E2_843 0.13 +0.5
987,906 - Pf6N2E2_843 0.20 +0.2
987,906 - Pf6N2E2_843 0.20 +0.5
987,921 + Pf6N2E2_843 0.20 -0.5
987,921 + Pf6N2E2_843 0.20 -0.9
987,922 - Pf6N2E2_843 0.20 -0.4
987,922 - Pf6N2E2_843 0.20 -0.1
987,922 - Pf6N2E2_843 0.20 -2.1
987,922 - Pf6N2E2_843 0.20 -1.0
987,922 - Pf6N2E2_843 0.20 +1.4
987,922 - Pf6N2E2_843 0.20 +0.0
987,995 + Pf6N2E2_843 0.25 -0.7
987,995 + Pf6N2E2_843 0.25 -2.3
987,995 + Pf6N2E2_843 0.25 -0.2
987,996 - Pf6N2E2_843 0.25 -0.5
987,996 - Pf6N2E2_843 0.25 -0.5
987,996 - Pf6N2E2_843 0.25 -2.3
987,996 - Pf6N2E2_843 0.25 -0.2
987,997 + Pf6N2E2_843 0.25 +0.5
987,997 + Pf6N2E2_843 0.25 -0.1
987,998 - Pf6N2E2_843 0.25 +1.9
988,061 + Pf6N2E2_843 0.28 -0.7
988,061 + Pf6N2E2_843 0.28 -0.2
988,061 + Pf6N2E2_843 0.28 +1.6
988,061 + Pf6N2E2_843 0.28 +0.2
988,062 - Pf6N2E2_843 0.28 +0.3
988,062 - Pf6N2E2_843 0.28 -0.6
988,149 - Pf6N2E2_843 0.33 -0.2
988,233 + Pf6N2E2_843 0.38 -0.2
988,233 + Pf6N2E2_843 0.38 -0.5
988,233 + Pf6N2E2_843 0.38 +0.3
988,233 + Pf6N2E2_843 0.38 -0.4
988,234 - Pf6N2E2_843 0.38 -0.5
988,304 + Pf6N2E2_843 0.42 -1.5
988,305 - Pf6N2E2_843 0.42 +0.9
988,367 - Pf6N2E2_843 0.46 +0.5
988,379 + Pf6N2E2_843 0.46 -0.1
988,380 - Pf6N2E2_843 0.46 +0.3
988,458 + Pf6N2E2_843 0.51 -0.1
988,788 - Pf6N2E2_843 0.70 +0.3
989,042 + Pf6N2E2_843 0.84 +1.1
989,042 + Pf6N2E2_843 0.84 +0.2
989,042 + Pf6N2E2_843 0.84 +0.9
989,042 + Pf6N2E2_843 0.84 -0.6
989,101 + Pf6N2E2_843 0.87 -1.3
989,109 + Pf6N2E2_843 0.88 -0.9
989,109 + Pf6N2E2_843 0.88 +0.5
989,207 + -0.2
989,207 + +0.7
989,207 + -0.6
989,208 - +0.8
989,320 + +0.4
989,320 + +0.7
989,320 + -0.4
989,321 - -0.7
989,321 - +0.9
989,611 + Pf6N2E2_844 0.20 +1.4
989,612 - Pf6N2E2_844 0.20 +0.3
989,812 + Pf6N2E2_844 0.40 -0.3
989,813 - Pf6N2E2_844 0.40 +1.5
989,885 + Pf6N2E2_844 0.48 -0.7
989,885 + Pf6N2E2_844 0.48 +0.2
989,885 + Pf6N2E2_844 0.48 -0.9
989,886 - Pf6N2E2_844 0.48 -0.1
989,886 - Pf6N2E2_844 0.48 +0.6
989,886 - Pf6N2E2_844 0.48 +0.2
989,886 - Pf6N2E2_844 0.48 -0.5
990,055 - Pf6N2E2_844 0.65 -0.1
990,055 - Pf6N2E2_844 0.65 -0.2
990,114 + Pf6N2E2_844 0.71 -2.1
990,220 - Pf6N2E2_844 0.81 +1.9
990,220 - Pf6N2E2_844 0.81 -1.0
990,236 + Pf6N2E2_844 0.83 +1.2
990,294 + Pf6N2E2_844 0.89 +0.5
990,295 - Pf6N2E2_844 0.89 +0.2
990,295 - Pf6N2E2_844 0.89 +0.4
990,295 - Pf6N2E2_844 0.89 +0.5

Or see this region's nucleotide sequence