Experiment: L-Aspartic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_818 and Pf6N2E2_819 overlap by 8 nucleotides Pf6N2E2_819 and Pf6N2E2_820 are separated by 267 nucleotides
Pf6N2E2_818 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 951,775 to 953,055
_818
Pf6N2E2_819 - Response regulator, at 953,048 to 953,425
_819
Pf6N2E2_820 - Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-), at 953,693 to 955,363
_820
Position (kb) 953
954 Strain fitness (log2 ratio) -2
-1
0
1
2 at 952.057 kb on + strand, within Pf6N2E2_818 at 952.057 kb on + strand, within Pf6N2E2_818 at 952.057 kb on + strand, within Pf6N2E2_818 at 952.057 kb on + strand, within Pf6N2E2_818 at 952.058 kb on - strand, within Pf6N2E2_818 at 952.058 kb on - strand, within Pf6N2E2_818 at 952.058 kb on - strand, within Pf6N2E2_818 at 952.156 kb on + strand, within Pf6N2E2_818 at 952.157 kb on - strand, within Pf6N2E2_818 at 952.157 kb on - strand, within Pf6N2E2_818 at 952.157 kb on - strand, within Pf6N2E2_818 at 952.191 kb on - strand, within Pf6N2E2_818 at 952.720 kb on + strand, within Pf6N2E2_818 at 952.743 kb on + strand, within Pf6N2E2_818 at 952.794 kb on + strand, within Pf6N2E2_818 at 952.794 kb on + strand, within Pf6N2E2_818 at 952.794 kb on + strand, within Pf6N2E2_818 at 953.015 kb on + strand at 953.016 kb on - strand at 953.025 kb on + strand at 953.025 kb on + strand at 953.073 kb on + strand at 953.073 kb on + strand at 953.073 kb on + strand at 953.073 kb on + strand at 953.073 kb on + strand at 953.074 kb on - strand at 953.120 kb on + strand, within Pf6N2E2_819 at 953.148 kb on + strand, within Pf6N2E2_819 at 953.148 kb on + strand, within Pf6N2E2_819 at 953.149 kb on - strand, within Pf6N2E2_819 at 953.312 kb on + strand, within Pf6N2E2_819 at 953.423 kb on + strand at 953.485 kb on - strand at 953.519 kb on + strand at 953.520 kb on - strand at 953.633 kb on - strand at 953.633 kb on - strand at 953.809 kb on - strand at 954.101 kb on + strand, within Pf6N2E2_820 at 954.101 kb on + strand, within Pf6N2E2_820 at 954.102 kb on - strand, within Pf6N2E2_820 at 954.204 kb on + strand, within Pf6N2E2_820 at 954.205 kb on - strand, within Pf6N2E2_820 at 954.330 kb on + strand, within Pf6N2E2_820 at 954.330 kb on + strand, within Pf6N2E2_820 at 954.331 kb on - strand, within Pf6N2E2_820 at 954.331 kb on - strand, within Pf6N2E2_820 at 954.331 kb on - strand, within Pf6N2E2_820 at 954.354 kb on + strand, within Pf6N2E2_820
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (N) remove 952,057 + Pf6N2E2_818 0.22 -2.0 952,057 + Pf6N2E2_818 0.22 -1.2 952,057 + Pf6N2E2_818 0.22 +0.1 952,057 + Pf6N2E2_818 0.22 -1.7 952,058 - Pf6N2E2_818 0.22 -0.2 952,058 - Pf6N2E2_818 0.22 -1.7 952,058 - Pf6N2E2_818 0.22 -0.5 952,156 + Pf6N2E2_818 0.30 -1.0 952,157 - Pf6N2E2_818 0.30 -2.2 952,157 - Pf6N2E2_818 0.30 +0.0 952,157 - Pf6N2E2_818 0.30 +1.1 952,191 - Pf6N2E2_818 0.32 +2.3 952,720 + Pf6N2E2_818 0.74 +0.8 952,743 + Pf6N2E2_818 0.76 +0.9 952,794 + Pf6N2E2_818 0.80 -0.5 952,794 + Pf6N2E2_818 0.80 -1.8 952,794 + Pf6N2E2_818 0.80 -2.1 953,015 + -1.7 953,016 - -1.9 953,025 + +0.3 953,025 + -1.8 953,073 + -0.7 953,073 + -1.0 953,073 + -0.7 953,073 + +0.3 953,073 + +0.9 953,074 - +0.5 953,120 + Pf6N2E2_819 0.19 -0.3 953,148 + Pf6N2E2_819 0.26 +0.0 953,148 + Pf6N2E2_819 0.26 -1.0 953,149 - Pf6N2E2_819 0.27 -2.2 953,312 + Pf6N2E2_819 0.70 -2.0 953,423 + +0.5 953,485 - -0.7 953,519 + +0.6 953,520 - +1.3 953,633 - +0.9 953,633 - +0.3 953,809 - -0.9 954,101 + Pf6N2E2_820 0.24 +0.5 954,101 + Pf6N2E2_820 0.24 +0.4 954,102 - Pf6N2E2_820 0.24 +0.9 954,204 + Pf6N2E2_820 0.31 +0.9 954,205 - Pf6N2E2_820 0.31 -0.2 954,330 + Pf6N2E2_820 0.38 -1.7 954,330 + Pf6N2E2_820 0.38 +0.5 954,331 - Pf6N2E2_820 0.38 -0.3 954,331 - Pf6N2E2_820 0.38 +0.8 954,331 - Pf6N2E2_820 0.38 -1.0 954,354 + Pf6N2E2_820 0.40 +0.3
Or see this region's nucleotide sequence