Experiment: L-Aspartic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3453 and Pf6N2E2_3454 are separated by 185 nucleotides Pf6N2E2_3454 and Pf6N2E2_3455 are separated by 771 nucleotides
Pf6N2E2_3453 - Transcriptional regulator, LysR family, at 4,021,603 to 4,022,550
_3453
Pf6N2E2_3454 - hypothetical protein, at 4,022,736 to 4,024,052
_3454
Pf6N2E2_3455 - Integral membrane protein YfiB, at 4,024,824 to 4,025,324
_3455
Position (kb)
4022
4023
4024
4025 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4021.913 kb on + strand, within Pf6N2E2_3453 at 4021.914 kb on - strand, within Pf6N2E2_3453 at 4021.914 kb on - strand, within Pf6N2E2_3453 at 4021.914 kb on - strand, within Pf6N2E2_3453 at 4021.914 kb on - strand, within Pf6N2E2_3453 at 4021.914 kb on - strand, within Pf6N2E2_3453 at 4022.089 kb on + strand, within Pf6N2E2_3453 at 4022.089 kb on + strand, within Pf6N2E2_3453 at 4022.089 kb on + strand, within Pf6N2E2_3453 at 4022.093 kb on + strand, within Pf6N2E2_3453 at 4022.093 kb on + strand, within Pf6N2E2_3453 at 4022.093 kb on + strand, within Pf6N2E2_3453 at 4022.093 kb on + strand, within Pf6N2E2_3453 at 4022.094 kb on - strand, within Pf6N2E2_3453 at 4022.094 kb on - strand, within Pf6N2E2_3453 at 4022.094 kb on - strand, within Pf6N2E2_3453 at 4022.094 kb on - strand, within Pf6N2E2_3453 at 4022.094 kb on - strand, within Pf6N2E2_3453 at 4022.094 kb on - strand, within Pf6N2E2_3453 at 4022.094 kb on - strand, within Pf6N2E2_3453 at 4022.094 kb on - strand, within Pf6N2E2_3453 at 4022.094 kb on - strand, within Pf6N2E2_3453 at 4022.094 kb on - strand, within Pf6N2E2_3453 at 4022.094 kb on - strand, within Pf6N2E2_3453 at 4022.143 kb on + strand, within Pf6N2E2_3453 at 4022.144 kb on - strand, within Pf6N2E2_3453 at 4022.144 kb on - strand, within Pf6N2E2_3453 at 4022.206 kb on + strand, within Pf6N2E2_3453 at 4022.206 kb on + strand, within Pf6N2E2_3453 at 4022.207 kb on - strand, within Pf6N2E2_3453 at 4022.242 kb on + strand, within Pf6N2E2_3453 at 4022.242 kb on + strand, within Pf6N2E2_3453 at 4022.242 kb on + strand, within Pf6N2E2_3453 at 4022.242 kb on + strand, within Pf6N2E2_3453 at 4022.243 kb on - strand, within Pf6N2E2_3453 at 4022.426 kb on - strand, within Pf6N2E2_3453 at 4022.460 kb on + strand at 4022.460 kb on + strand at 4022.460 kb on + strand at 4022.460 kb on + strand at 4022.460 kb on + strand at 4022.476 kb on + strand at 4022.476 kb on + strand at 4022.606 kb on + strand at 4022.606 kb on + strand at 4022.606 kb on + strand at 4022.607 kb on - strand at 4022.607 kb on - strand at 4022.612 kb on + strand at 4022.612 kb on + strand at 4022.612 kb on + strand at 4022.612 kb on + strand at 4022.613 kb on - strand at 4022.615 kb on + strand at 4022.615 kb on + strand at 4022.615 kb on + strand at 4022.615 kb on + strand at 4022.633 kb on - strand at 4022.675 kb on - strand at 4022.681 kb on + strand at 4022.681 kb on + strand at 4022.681 kb on + strand at 4022.681 kb on + strand at 4022.681 kb on + strand at 4022.681 kb on + strand at 4022.724 kb on + strand at 4023.402 kb on - strand, within Pf6N2E2_3454 at 4023.820 kb on + strand, within Pf6N2E2_3454 at 4023.902 kb on + strand, within Pf6N2E2_3454 at 4024.013 kb on + strand at 4024.192 kb on + strand at 4024.246 kb on - strand at 4024.246 kb on - strand at 4024.246 kb on - strand at 4024.343 kb on - strand at 4024.396 kb on + strand at 4024.563 kb on + strand at 4024.636 kb on + strand at 4024.636 kb on + strand at 4024.661 kb on + strand at 4024.693 kb on + strand at 4024.700 kb on - strand at 4024.730 kb on + strand at 4024.730 kb on + strand at 4024.735 kb on - strand at 4024.825 kb on + strand at 4024.826 kb on - strand at 4024.826 kb on - strand at 4024.905 kb on - strand, within Pf6N2E2_3455 at 4025.005 kb on + strand, within Pf6N2E2_3455 at 4025.006 kb on - strand, within Pf6N2E2_3455 at 4025.046 kb on + strand, within Pf6N2E2_3455 at 4025.046 kb on + strand, within Pf6N2E2_3455
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (N) remove 4,021,913 + Pf6N2E2_3453 0.33 -0.7 4,021,914 - Pf6N2E2_3453 0.33 +1.0 4,021,914 - Pf6N2E2_3453 0.33 +0.8 4,021,914 - Pf6N2E2_3453 0.33 +1.8 4,021,914 - Pf6N2E2_3453 0.33 +0.4 4,021,914 - Pf6N2E2_3453 0.33 -0.8 4,022,089 + Pf6N2E2_3453 0.51 -0.0 4,022,089 + Pf6N2E2_3453 0.51 +1.1 4,022,089 + Pf6N2E2_3453 0.51 +1.7 4,022,093 + Pf6N2E2_3453 0.52 +1.7 4,022,093 + Pf6N2E2_3453 0.52 -0.4 4,022,093 + Pf6N2E2_3453 0.52 +1.4 4,022,093 + Pf6N2E2_3453 0.52 +0.5 4,022,094 - Pf6N2E2_3453 0.52 -0.0 4,022,094 - Pf6N2E2_3453 0.52 -0.5 4,022,094 - Pf6N2E2_3453 0.52 -0.3 4,022,094 - Pf6N2E2_3453 0.52 +2.0 4,022,094 - Pf6N2E2_3453 0.52 +0.2 4,022,094 - Pf6N2E2_3453 0.52 +1.2 4,022,094 - Pf6N2E2_3453 0.52 +0.0 4,022,094 - Pf6N2E2_3453 0.52 -0.7 4,022,094 - Pf6N2E2_3453 0.52 +0.5 4,022,094 - Pf6N2E2_3453 0.52 +1.3 4,022,094 - Pf6N2E2_3453 0.52 -1.6 4,022,143 + Pf6N2E2_3453 0.57 -1.8 4,022,144 - Pf6N2E2_3453 0.57 +0.3 4,022,144 - Pf6N2E2_3453 0.57 -1.1 4,022,206 + Pf6N2E2_3453 0.64 -0.8 4,022,206 + Pf6N2E2_3453 0.64 +0.1 4,022,207 - Pf6N2E2_3453 0.64 -0.1 4,022,242 + Pf6N2E2_3453 0.67 +0.7 4,022,242 + Pf6N2E2_3453 0.67 -0.4 4,022,242 + Pf6N2E2_3453 0.67 -0.7 4,022,242 + Pf6N2E2_3453 0.67 -0.7 4,022,243 - Pf6N2E2_3453 0.68 -0.9 4,022,426 - Pf6N2E2_3453 0.87 +0.8 4,022,460 + -0.6 4,022,460 + +0.6 4,022,460 + +0.2 4,022,460 + -0.6 4,022,460 + +0.7 4,022,476 + -1.2 4,022,476 + -0.4 4,022,606 + +0.2 4,022,606 + -1.2 4,022,606 + +1.9 4,022,607 - -0.4 4,022,607 - +1.0 4,022,612 + -0.2 4,022,612 + +0.3 4,022,612 + +0.6 4,022,612 + +0.3 4,022,613 - -0.4 4,022,615 + -0.1 4,022,615 + -0.2 4,022,615 + +2.5 4,022,615 + +0.6 4,022,633 - +1.6 4,022,675 - -0.2 4,022,681 + -0.8 4,022,681 + +0.8 4,022,681 + +1.3 4,022,681 + -0.0 4,022,681 + -1.3 4,022,681 + -0.1 4,022,724 + -0.6 4,023,402 - Pf6N2E2_3454 0.51 -0.5 4,023,820 + Pf6N2E2_3454 0.82 -0.5 4,023,902 + Pf6N2E2_3454 0.89 -2.3 4,024,013 + +0.6 4,024,192 + -0.1 4,024,246 - -0.1 4,024,246 - +1.9 4,024,246 - +0.7 4,024,343 - +1.0 4,024,396 + -0.7 4,024,563 + -1.0 4,024,636 + +0.7 4,024,636 + +0.7 4,024,661 + +0.6 4,024,693 + -1.2 4,024,700 - -0.0 4,024,730 + -0.3 4,024,730 + +1.0 4,024,735 - +0.0 4,024,825 + -0.8 4,024,826 - -1.3 4,024,826 - -1.3 4,024,905 - Pf6N2E2_3455 0.16 -0.5 4,025,005 + Pf6N2E2_3455 0.36 +1.6 4,025,006 - Pf6N2E2_3455 0.36 -0.0 4,025,046 + Pf6N2E2_3455 0.44 +0.7 4,025,046 + Pf6N2E2_3455 0.44 +0.5
Or see this region's nucleotide sequence