Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_499 and Pf6N2E2_500 are separated by 78 nucleotides Pf6N2E2_500 and Pf6N2E2_501 are separated by 84 nucleotides
Pf6N2E2_499 - Possible pyrimidine permease in reductive pathway, at 567,621 to 569,099
_499
Pf6N2E2_500 - Beta-ureidopropionase (EC 3.5.1.6), at 569,178 to 570,461
_500
Pf6N2E2_501 - Sensory box transcriptional regulator, LuxR family, at 570,546 to 572,030
_501
Position (kb) 569
570
571 Strain fitness (log2 ratio) -1
0
1
2
3 at 568.317 kb on + strand, within Pf6N2E2_499 at 568.317 kb on + strand, within Pf6N2E2_499 at 568.318 kb on - strand, within Pf6N2E2_499 at 568.318 kb on - strand, within Pf6N2E2_499 at 568.318 kb on - strand, within Pf6N2E2_499 at 568.783 kb on - strand, within Pf6N2E2_499 at 568.848 kb on + strand, within Pf6N2E2_499 at 568.849 kb on - strand, within Pf6N2E2_499 at 568.905 kb on + strand, within Pf6N2E2_499 at 568.998 kb on + strand at 568.998 kb on + strand at 568.999 kb on - strand at 569.043 kb on + strand at 569.200 kb on + strand at 569.200 kb on + strand at 569.201 kb on - strand at 569.760 kb on + strand, within Pf6N2E2_500 at 569.761 kb on - strand, within Pf6N2E2_500 at 569.909 kb on + strand, within Pf6N2E2_500 at 569.910 kb on - strand, within Pf6N2E2_500 at 570.190 kb on - strand, within Pf6N2E2_500 at 570.476 kb on - strand at 570.497 kb on - strand at 570.526 kb on - strand at 570.526 kb on - strand at 570.526 kb on - strand at 570.526 kb on - strand at 570.726 kb on + strand, within Pf6N2E2_501 at 570.726 kb on + strand, within Pf6N2E2_501 at 570.726 kb on + strand, within Pf6N2E2_501 at 570.727 kb on - strand, within Pf6N2E2_501 at 570.727 kb on - strand, within Pf6N2E2_501 at 570.783 kb on + strand, within Pf6N2E2_501 at 570.784 kb on - strand, within Pf6N2E2_501 at 570.784 kb on - strand, within Pf6N2E2_501 at 571.038 kb on + strand, within Pf6N2E2_501 at 571.038 kb on + strand, within Pf6N2E2_501 at 571.039 kb on - strand, within Pf6N2E2_501 at 571.111 kb on - strand, within Pf6N2E2_501
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 568,317 + Pf6N2E2_499 0.47 +0.7 568,317 + Pf6N2E2_499 0.47 -0.3 568,318 - Pf6N2E2_499 0.47 -1.3 568,318 - Pf6N2E2_499 0.47 +0.1 568,318 - Pf6N2E2_499 0.47 +0.5 568,783 - Pf6N2E2_499 0.79 -0.6 568,848 + Pf6N2E2_499 0.83 +0.6 568,849 - Pf6N2E2_499 0.83 -1.7 568,905 + Pf6N2E2_499 0.87 -0.9 568,998 + +0.7 568,998 + +2.6 568,999 - +0.9 569,043 + -0.9 569,200 + -0.3 569,200 + -0.2 569,201 - -0.4 569,760 + Pf6N2E2_500 0.45 +1.1 569,761 - Pf6N2E2_500 0.45 -1.3 569,909 + Pf6N2E2_500 0.57 -0.7 569,910 - Pf6N2E2_500 0.57 -1.6 570,190 - Pf6N2E2_500 0.79 -0.6 570,476 - +0.3 570,497 - +0.5 570,526 - +0.8 570,526 - -0.6 570,526 - +0.2 570,526 - -0.5 570,726 + Pf6N2E2_501 0.12 -0.8 570,726 + Pf6N2E2_501 0.12 +1.0 570,726 + Pf6N2E2_501 0.12 +2.5 570,727 - Pf6N2E2_501 0.12 -0.0 570,727 - Pf6N2E2_501 0.12 -0.9 570,783 + Pf6N2E2_501 0.16 -1.3 570,784 - Pf6N2E2_501 0.16 +3.4 570,784 - Pf6N2E2_501 0.16 -0.1 571,038 + Pf6N2E2_501 0.33 +1.0 571,038 + Pf6N2E2_501 0.33 +0.1 571,039 - Pf6N2E2_501 0.33 +0.7 571,111 - Pf6N2E2_501 0.38 -1.4
Or see this region's nucleotide sequence