Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4756

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4755 and Pf6N2E2_4756 are separated by 211 nucleotidesPf6N2E2_4756 and Pf6N2E2_4757 are separated by 66 nucleotidesPf6N2E2_4757 and Pf6N2E2_4758 are separated by 58 nucleotides Pf6N2E2_4755 - YihE protein, required for LPS synthesis, at 5,493,354 to 5,494,328 _4755 Pf6N2E2_4756 - Putative phosphatase, at 5,494,540 to 5,496,435 _4756 Pf6N2E2_4757 - DNA-binding domain of ModE / Molybdate-binding domain of ModE, at 5,496,502 to 5,497,266 _4757 Pf6N2E2_4758 - Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy, at 5,497,325 to 5,498,065 _4758 Position (kb) 5494 5495 5496 5497Strain fitness (log2 ratio) -3 -2 -1 0 1at 5493.772 kb on + strand, within Pf6N2E2_4755at 5493.772 kb on + strand, within Pf6N2E2_4755at 5493.773 kb on - strand, within Pf6N2E2_4755at 5493.773 kb on - strand, within Pf6N2E2_4755at 5494.099 kb on + strand, within Pf6N2E2_4755at 5494.099 kb on + strand, within Pf6N2E2_4755at 5494.099 kb on + strand, within Pf6N2E2_4755at 5494.099 kb on + strand, within Pf6N2E2_4755at 5494.100 kb on - strand, within Pf6N2E2_4755at 5494.168 kb on + strand, within Pf6N2E2_4755at 5494.168 kb on + strand, within Pf6N2E2_4755at 5494.169 kb on - strand, within Pf6N2E2_4755at 5494.214 kb on - strand, within Pf6N2E2_4755at 5494.214 kb on - strand, within Pf6N2E2_4755at 5494.228 kb on + strand, within Pf6N2E2_4755at 5494.229 kb on - strand, within Pf6N2E2_4755at 5494.229 kb on - strand, within Pf6N2E2_4755at 5494.290 kb on + strandat 5494.517 kb on + strandat 5494.517 kb on + strandat 5494.517 kb on + strandat 5494.517 kb on + strandat 5494.517 kb on + strandat 5494.517 kb on + strandat 5494.517 kb on + strandat 5494.517 kb on + strandat 5494.517 kb on + strandat 5494.517 kb on + strandat 5494.517 kb on + strandat 5494.517 kb on + strandat 5494.518 kb on - strandat 5494.518 kb on - strandat 5494.518 kb on - strandat 5494.518 kb on - strandat 5494.518 kb on - strandat 5494.518 kb on - strandat 5494.662 kb on + strandat 5494.662 kb on + strandat 5494.662 kb on + strandat 5494.662 kb on + strandat 5494.663 kb on - strandat 5494.663 kb on - strandat 5494.663 kb on - strandat 5494.670 kb on + strandat 5494.670 kb on + strandat 5494.670 kb on + strandat 5494.670 kb on + strandat 5494.670 kb on + strandat 5494.671 kb on - strandat 5494.671 kb on - strandat 5494.924 kb on + strand, within Pf6N2E2_4756at 5495.018 kb on + strand, within Pf6N2E2_4756at 5495.019 kb on - strand, within Pf6N2E2_4756at 5495.040 kb on + strand, within Pf6N2E2_4756at 5495.099 kb on + strand, within Pf6N2E2_4756at 5495.099 kb on + strand, within Pf6N2E2_4756at 5495.100 kb on - strand, within Pf6N2E2_4756at 5495.100 kb on - strand, within Pf6N2E2_4756at 5495.100 kb on - strand, within Pf6N2E2_4756at 5495.321 kb on + strand, within Pf6N2E2_4756at 5495.321 kb on + strand, within Pf6N2E2_4756at 5495.321 kb on + strand, within Pf6N2E2_4756at 5495.321 kb on + strand, within Pf6N2E2_4756at 5495.321 kb on + strand, within Pf6N2E2_4756at 5495.321 kb on + strand, within Pf6N2E2_4756at 5495.321 kb on + strand, within Pf6N2E2_4756at 5495.321 kb on + strand, within Pf6N2E2_4756at 5495.321 kb on + strand, within Pf6N2E2_4756at 5495.321 kb on + strand, within Pf6N2E2_4756at 5495.321 kb on + strand, within Pf6N2E2_4756at 5495.321 kb on + strand, within Pf6N2E2_4756at 5495.322 kb on - strand, within Pf6N2E2_4756at 5495.322 kb on - strand, within Pf6N2E2_4756at 5495.322 kb on - strand, within Pf6N2E2_4756at 5495.322 kb on - strand, within Pf6N2E2_4756at 5495.322 kb on - strand, within Pf6N2E2_4756at 5495.322 kb on - strand, within Pf6N2E2_4756at 5495.399 kb on + strand, within Pf6N2E2_4756at 5495.399 kb on + strand, within Pf6N2E2_4756at 5495.399 kb on + strand, within Pf6N2E2_4756at 5495.399 kb on + strand, within Pf6N2E2_4756at 5495.399 kb on + strand, within Pf6N2E2_4756at 5495.400 kb on - strand, within Pf6N2E2_4756at 5495.432 kb on + strand, within Pf6N2E2_4756at 5495.432 kb on + strand, within Pf6N2E2_4756at 5495.432 kb on + strand, within Pf6N2E2_4756at 5495.432 kb on + strand, within Pf6N2E2_4756at 5495.432 kb on + strand, within Pf6N2E2_4756at 5495.432 kb on + strand, within Pf6N2E2_4756at 5495.432 kb on + strand, within Pf6N2E2_4756at 5495.432 kb on + strand, within Pf6N2E2_4756at 5495.432 kb on + strand, within Pf6N2E2_4756at 5495.433 kb on - strand, within Pf6N2E2_4756at 5495.433 kb on - strand, within Pf6N2E2_4756at 5495.433 kb on - strand, within Pf6N2E2_4756at 5495.433 kb on - strand, within Pf6N2E2_4756at 5495.433 kb on - strand, within Pf6N2E2_4756at 5495.433 kb on - strand, within Pf6N2E2_4756at 5495.433 kb on - strand, within Pf6N2E2_4756at 5495.433 kb on - strand, within Pf6N2E2_4756at 5495.433 kb on - strand, within Pf6N2E2_4756at 5495.509 kb on + strand, within Pf6N2E2_4756at 5495.729 kb on + strand, within Pf6N2E2_4756at 5495.729 kb on + strand, within Pf6N2E2_4756at 5495.729 kb on + strand, within Pf6N2E2_4756at 5495.729 kb on + strand, within Pf6N2E2_4756at 5495.729 kb on + strand, within Pf6N2E2_4756at 5495.729 kb on + strand, within Pf6N2E2_4756at 5495.730 kb on - strand, within Pf6N2E2_4756at 5495.730 kb on - strand, within Pf6N2E2_4756at 5495.730 kb on - strand, within Pf6N2E2_4756at 5495.730 kb on - strand, within Pf6N2E2_4756at 5495.730 kb on - strand, within Pf6N2E2_4756at 5495.879 kb on + strand, within Pf6N2E2_4756at 5496.008 kb on + strand, within Pf6N2E2_4756at 5496.008 kb on + strand, within Pf6N2E2_4756at 5496.008 kb on + strand, within Pf6N2E2_4756at 5496.008 kb on + strand, within Pf6N2E2_4756at 5496.008 kb on + strand, within Pf6N2E2_4756at 5496.008 kb on + strand, within Pf6N2E2_4756at 5496.009 kb on - strand, within Pf6N2E2_4756at 5496.009 kb on - strand, within Pf6N2E2_4756at 5496.009 kb on - strand, within Pf6N2E2_4756at 5496.009 kb on - strand, within Pf6N2E2_4756at 5496.014 kb on + strand, within Pf6N2E2_4756at 5496.014 kb on + strand, within Pf6N2E2_4756at 5496.014 kb on + strand, within Pf6N2E2_4756at 5496.014 kb on + strand, within Pf6N2E2_4756at 5496.014 kb on + strand, within Pf6N2E2_4756at 5496.014 kb on + strand, within Pf6N2E2_4756at 5496.014 kb on + strand, within Pf6N2E2_4756at 5496.014 kb on + strand, within Pf6N2E2_4756at 5496.014 kb on + strand, within Pf6N2E2_4756at 5496.015 kb on - strand, within Pf6N2E2_4756at 5496.015 kb on - strand, within Pf6N2E2_4756at 5496.015 kb on - strand, within Pf6N2E2_4756at 5496.015 kb on - strand, within Pf6N2E2_4756at 5496.015 kb on - strand, within Pf6N2E2_4756at 5496.015 kb on - strand, within Pf6N2E2_4756at 5496.015 kb on - strand, within Pf6N2E2_4756at 5496.023 kb on + strand, within Pf6N2E2_4756at 5496.023 kb on + strand, within Pf6N2E2_4756at 5496.206 kb on + strand, within Pf6N2E2_4756at 5496.207 kb on - strand, within Pf6N2E2_4756at 5496.424 kb on + strandat 5496.424 kb on + strandat 5496.424 kb on + strandat 5496.424 kb on + strandat 5496.424 kb on + strandat 5496.425 kb on - strandat 5496.425 kb on - strandat 5496.425 kb on - strandat 5496.425 kb on - strandat 5496.427 kb on + strandat 5496.427 kb on + strandat 5496.427 kb on + strandat 5496.427 kb on + strandat 5496.428 kb on - strandat 5496.487 kb on + strandat 5496.487 kb on + strandat 5496.487 kb on + strandat 5496.487 kb on + strandat 5496.487 kb on + strandat 5496.487 kb on + strandat 5496.488 kb on - strandat 5496.488 kb on - strandat 5496.488 kb on - strandat 5496.488 kb on - strandat 5496.488 kb on - strandat 5496.503 kb on + strandat 5496.503 kb on + strandat 5496.504 kb on - strandat 5496.504 kb on - strandat 5496.583 kb on + strand, within Pf6N2E2_4757at 5496.696 kb on + strand, within Pf6N2E2_4757at 5496.696 kb on + strand, within Pf6N2E2_4757at 5496.697 kb on - strand, within Pf6N2E2_4757at 5496.733 kb on + strand, within Pf6N2E2_4757at 5496.733 kb on + strand, within Pf6N2E2_4757at 5496.733 kb on + strand, within Pf6N2E2_4757at 5496.733 kb on + strand, within Pf6N2E2_4757at 5496.734 kb on - strand, within Pf6N2E2_4757at 5496.902 kb on + strand, within Pf6N2E2_4757at 5496.902 kb on + strand, within Pf6N2E2_4757at 5496.902 kb on + strand, within Pf6N2E2_4757at 5496.903 kb on - strand, within Pf6N2E2_4757at 5496.903 kb on - strand, within Pf6N2E2_4757at 5496.903 kb on - strand, within Pf6N2E2_4757at 5496.982 kb on + strand, within Pf6N2E2_4757at 5496.982 kb on + strand, within Pf6N2E2_4757at 5496.982 kb on + strand, within Pf6N2E2_4757at 5496.982 kb on + strand, within Pf6N2E2_4757at 5496.982 kb on + strand, within Pf6N2E2_4757at 5496.982 kb on + strand, within Pf6N2E2_4757at 5496.982 kb on + strand, within Pf6N2E2_4757at 5496.983 kb on - strand, within Pf6N2E2_4757at 5496.983 kb on - strand, within Pf6N2E2_4757at 5496.983 kb on - strand, within Pf6N2E2_4757at 5496.983 kb on - strand, within Pf6N2E2_4757at 5497.014 kb on - strand, within Pf6N2E2_4757at 5497.146 kb on - strand, within Pf6N2E2_4757at 5497.146 kb on - strand, within Pf6N2E2_4757at 5497.365 kb on + strandat 5497.365 kb on + strandat 5497.365 kb on + strandat 5497.365 kb on + strandat 5497.366 kb on - strandat 5497.366 kb on - strandat 5497.366 kb on - strandat 5497.366 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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5,493,772 + Pf6N2E2_4755 0.43 -0.2
5,493,772 + Pf6N2E2_4755 0.43 +0.2
5,493,773 - Pf6N2E2_4755 0.43 -1.0
5,493,773 - Pf6N2E2_4755 0.43 -0.4
5,494,099 + Pf6N2E2_4755 0.76 +0.9
5,494,099 + Pf6N2E2_4755 0.76 -0.8
5,494,099 + Pf6N2E2_4755 0.76 -1.0
5,494,099 + Pf6N2E2_4755 0.76 -0.3
5,494,100 - Pf6N2E2_4755 0.77 +0.9
5,494,168 + Pf6N2E2_4755 0.83 +0.0
5,494,168 + Pf6N2E2_4755 0.83 -0.1
5,494,169 - Pf6N2E2_4755 0.84 -0.1
5,494,214 - Pf6N2E2_4755 0.88 +0.7
5,494,214 - Pf6N2E2_4755 0.88 +0.7
5,494,228 + Pf6N2E2_4755 0.90 +1.0
5,494,229 - Pf6N2E2_4755 0.90 +0.3
5,494,229 - Pf6N2E2_4755 0.90 -0.1
5,494,290 + +0.5
5,494,517 + +0.5
5,494,517 + +0.5
5,494,517 + +0.9
5,494,517 + -0.8
5,494,517 + -0.3
5,494,517 + +0.4
5,494,517 + +0.2
5,494,517 + -0.6
5,494,517 + +0.6
5,494,517 + -0.8
5,494,517 + -0.2
5,494,517 + -0.2
5,494,518 - -0.4
5,494,518 - +0.6
5,494,518 - +0.4
5,494,518 - +0.0
5,494,518 - +0.4
5,494,518 - +0.0
5,494,662 + +0.2
5,494,662 + -0.6
5,494,662 + -0.7
5,494,662 + +0.6
5,494,663 - +0.0
5,494,663 - -0.5
5,494,663 - -0.1
5,494,670 + +0.2
5,494,670 + -0.1
5,494,670 + +0.8
5,494,670 + +0.4
5,494,670 + -1.0
5,494,671 - +0.1
5,494,671 - +0.9
5,494,924 + Pf6N2E2_4756 0.20 -1.4
5,495,018 + Pf6N2E2_4756 0.25 +0.3
5,495,019 - Pf6N2E2_4756 0.25 -3.1
5,495,040 + Pf6N2E2_4756 0.26 -0.1
5,495,099 + Pf6N2E2_4756 0.29 +0.5
5,495,099 + Pf6N2E2_4756 0.29 +1.3
5,495,100 - Pf6N2E2_4756 0.30 +1.2
5,495,100 - Pf6N2E2_4756 0.30 -1.2
5,495,100 - Pf6N2E2_4756 0.30 +0.9
5,495,321 + Pf6N2E2_4756 0.41 +0.2
5,495,321 + Pf6N2E2_4756 0.41 -0.6
5,495,321 + Pf6N2E2_4756 0.41 +0.6
5,495,321 + Pf6N2E2_4756 0.41 -0.1
5,495,321 + Pf6N2E2_4756 0.41 +1.0
5,495,321 + Pf6N2E2_4756 0.41 -0.0
5,495,321 + Pf6N2E2_4756 0.41 -0.2
5,495,321 + Pf6N2E2_4756 0.41 +1.2
5,495,321 + Pf6N2E2_4756 0.41 +0.5
5,495,321 + Pf6N2E2_4756 0.41 -0.3
5,495,321 + Pf6N2E2_4756 0.41 -0.2
5,495,321 + Pf6N2E2_4756 0.41 +0.5
5,495,322 - Pf6N2E2_4756 0.41 -1.9
5,495,322 - Pf6N2E2_4756 0.41 -0.3
5,495,322 - Pf6N2E2_4756 0.41 +0.2
5,495,322 - Pf6N2E2_4756 0.41 +1.3
5,495,322 - Pf6N2E2_4756 0.41 -0.0
5,495,322 - Pf6N2E2_4756 0.41 +0.4
5,495,399 + Pf6N2E2_4756 0.45 -0.4
5,495,399 + Pf6N2E2_4756 0.45 +0.1
5,495,399 + Pf6N2E2_4756 0.45 +0.3
5,495,399 + Pf6N2E2_4756 0.45 +1.2
5,495,399 + Pf6N2E2_4756 0.45 +0.4
5,495,400 - Pf6N2E2_4756 0.45 -2.0
5,495,432 + Pf6N2E2_4756 0.47 -0.6
5,495,432 + Pf6N2E2_4756 0.47 +0.1
5,495,432 + Pf6N2E2_4756 0.47 -1.2
5,495,432 + Pf6N2E2_4756 0.47 -0.1
5,495,432 + Pf6N2E2_4756 0.47 -0.8
5,495,432 + Pf6N2E2_4756 0.47 -0.8
5,495,432 + Pf6N2E2_4756 0.47 +1.6
5,495,432 + Pf6N2E2_4756 0.47 -0.7
5,495,432 + Pf6N2E2_4756 0.47 +0.6
5,495,433 - Pf6N2E2_4756 0.47 +0.9
5,495,433 - Pf6N2E2_4756 0.47 +0.4
5,495,433 - Pf6N2E2_4756 0.47 +0.4
5,495,433 - Pf6N2E2_4756 0.47 +0.6
5,495,433 - Pf6N2E2_4756 0.47 +0.2
5,495,433 - Pf6N2E2_4756 0.47 +1.2
5,495,433 - Pf6N2E2_4756 0.47 +0.7
5,495,433 - Pf6N2E2_4756 0.47 +1.2
5,495,433 - Pf6N2E2_4756 0.47 -0.6
5,495,509 + Pf6N2E2_4756 0.51 -0.5
5,495,729 + Pf6N2E2_4756 0.63 -2.9
5,495,729 + Pf6N2E2_4756 0.63 +0.5
5,495,729 + Pf6N2E2_4756 0.63 -0.8
5,495,729 + Pf6N2E2_4756 0.63 -0.6
5,495,729 + Pf6N2E2_4756 0.63 +0.7
5,495,729 + Pf6N2E2_4756 0.63 +1.6
5,495,730 - Pf6N2E2_4756 0.63 +0.3
5,495,730 - Pf6N2E2_4756 0.63 +1.6
5,495,730 - Pf6N2E2_4756 0.63 -0.9
5,495,730 - Pf6N2E2_4756 0.63 +0.6
5,495,730 - Pf6N2E2_4756 0.63 +1.2
5,495,879 + Pf6N2E2_4756 0.71 +0.3
5,496,008 + Pf6N2E2_4756 0.77 +1.2
5,496,008 + Pf6N2E2_4756 0.77 -2.6
5,496,008 + Pf6N2E2_4756 0.77 +0.1
5,496,008 + Pf6N2E2_4756 0.77 +0.6
5,496,008 + Pf6N2E2_4756 0.77 -0.3
5,496,008 + Pf6N2E2_4756 0.77 +0.5
5,496,009 - Pf6N2E2_4756 0.77 +0.8
5,496,009 - Pf6N2E2_4756 0.77 +0.7
5,496,009 - Pf6N2E2_4756 0.77 +0.4
5,496,009 - Pf6N2E2_4756 0.77 +1.2
5,496,014 + Pf6N2E2_4756 0.78 -0.1
5,496,014 + Pf6N2E2_4756 0.78 -0.3
5,496,014 + Pf6N2E2_4756 0.78 +0.3
5,496,014 + Pf6N2E2_4756 0.78 -1.2
5,496,014 + Pf6N2E2_4756 0.78 -0.5
5,496,014 + Pf6N2E2_4756 0.78 -0.0
5,496,014 + Pf6N2E2_4756 0.78 +0.7
5,496,014 + Pf6N2E2_4756 0.78 -0.7
5,496,014 + Pf6N2E2_4756 0.78 +0.8
5,496,015 - Pf6N2E2_4756 0.78 +0.8
5,496,015 - Pf6N2E2_4756 0.78 +0.8
5,496,015 - Pf6N2E2_4756 0.78 -1.2
5,496,015 - Pf6N2E2_4756 0.78 -0.2
5,496,015 - Pf6N2E2_4756 0.78 -1.1
5,496,015 - Pf6N2E2_4756 0.78 +0.0
5,496,015 - Pf6N2E2_4756 0.78 +0.1
5,496,023 + Pf6N2E2_4756 0.78 +0.1
5,496,023 + Pf6N2E2_4756 0.78 -0.1
5,496,206 + Pf6N2E2_4756 0.88 +0.2
5,496,207 - Pf6N2E2_4756 0.88 -0.3
5,496,424 + +1.1
5,496,424 + +0.6
5,496,424 + +0.6
5,496,424 + +0.1
5,496,424 + +1.0
5,496,425 - +0.0
5,496,425 - -1.1
5,496,425 - -0.1
5,496,425 - +0.5
5,496,427 + +0.6
5,496,427 + -0.5
5,496,427 + -0.1
5,496,427 + +0.4
5,496,428 - -0.4
5,496,487 + +0.2
5,496,487 + +0.6
5,496,487 + -0.2
5,496,487 + +0.9
5,496,487 + +0.2
5,496,487 + -0.8
5,496,488 - -0.2
5,496,488 - +0.9
5,496,488 - -0.2
5,496,488 - -1.7
5,496,488 - +0.3
5,496,503 + +0.5
5,496,503 + +0.1
5,496,504 - +0.9
5,496,504 - -0.9
5,496,583 + Pf6N2E2_4757 0.11 +0.1
5,496,696 + Pf6N2E2_4757 0.25 -0.4
5,496,696 + Pf6N2E2_4757 0.25 +1.1
5,496,697 - Pf6N2E2_4757 0.25 -1.3
5,496,733 + Pf6N2E2_4757 0.30 -0.2
5,496,733 + Pf6N2E2_4757 0.30 -0.3
5,496,733 + Pf6N2E2_4757 0.30 +1.7
5,496,733 + Pf6N2E2_4757 0.30 -0.1
5,496,734 - Pf6N2E2_4757 0.30 +0.4
5,496,902 + Pf6N2E2_4757 0.52 -1.6
5,496,902 + Pf6N2E2_4757 0.52 -0.6
5,496,902 + Pf6N2E2_4757 0.52 +0.6
5,496,903 - Pf6N2E2_4757 0.52 +0.1
5,496,903 - Pf6N2E2_4757 0.52 +0.3
5,496,903 - Pf6N2E2_4757 0.52 +0.4
5,496,982 + Pf6N2E2_4757 0.63 +1.4
5,496,982 + Pf6N2E2_4757 0.63 -1.3
5,496,982 + Pf6N2E2_4757 0.63 +1.2
5,496,982 + Pf6N2E2_4757 0.63 -0.2
5,496,982 + Pf6N2E2_4757 0.63 -1.1
5,496,982 + Pf6N2E2_4757 0.63 +0.1
5,496,982 + Pf6N2E2_4757 0.63 -0.5
5,496,983 - Pf6N2E2_4757 0.63 +0.1
5,496,983 - Pf6N2E2_4757 0.63 +0.5
5,496,983 - Pf6N2E2_4757 0.63 -0.1
5,496,983 - Pf6N2E2_4757 0.63 +0.6
5,497,014 - Pf6N2E2_4757 0.67 +0.6
5,497,146 - Pf6N2E2_4757 0.84 +0.6
5,497,146 - Pf6N2E2_4757 0.84 -0.0
5,497,365 + -0.5
5,497,365 + +1.1
5,497,365 + -1.1
5,497,365 + +0.4
5,497,366 - -0.1
5,497,366 - +0.4
5,497,366 - +0.9
5,497,366 - -0.3

Or see this region's nucleotide sequence