Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1875 and Pf6N2E2_1876 are separated by 44 nucleotides Pf6N2E2_1876 and Pf6N2E2_1877 are separated by 23 nucleotides
Pf6N2E2_1875 - Protoporphyrinogen oxidase (EC 1.3.3.4), at 2,223,041 to 2,224,369
_1875
Pf6N2E2_1876 - O-acetylhomoserine sulfhydrylase (EC 2.5.1.49), at 2,224,414 to 2,225,805
_1876
Pf6N2E2_1877 - putative transmembrane efflux protein., at 2,225,829 to 2,227,007
_1877
Position (kb)
2224
2225
2226 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2223.573 kb on - strand, within Pf6N2E2_1875 at 2223.759 kb on + strand, within Pf6N2E2_1875 at 2224.249 kb on + strand at 2224.315 kb on - strand at 2224.396 kb on - strand at 2224.454 kb on - strand at 2224.542 kb on + strand at 2224.543 kb on - strand at 2224.543 kb on - strand at 2224.672 kb on + strand, within Pf6N2E2_1876 at 2224.673 kb on - strand, within Pf6N2E2_1876 at 2225.113 kb on - strand, within Pf6N2E2_1876 at 2225.230 kb on - strand, within Pf6N2E2_1876 at 2225.372 kb on - strand, within Pf6N2E2_1876 at 2225.542 kb on - strand, within Pf6N2E2_1876 at 2225.868 kb on - strand at 2225.870 kb on - strand at 2225.953 kb on - strand, within Pf6N2E2_1877 at 2226.071 kb on - strand, within Pf6N2E2_1877 at 2226.534 kb on + strand, within Pf6N2E2_1877 at 2226.654 kb on + strand, within Pf6N2E2_1877 at 2226.654 kb on + strand, within Pf6N2E2_1877 at 2226.654 kb on + strand, within Pf6N2E2_1877 at 2226.654 kb on + strand, within Pf6N2E2_1877 at 2226.655 kb on - strand, within Pf6N2E2_1877
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 2,223,573 - Pf6N2E2_1875 0.40 +0.9 2,223,759 + Pf6N2E2_1875 0.54 -0.7 2,224,249 + +0.2 2,224,315 - -1.3 2,224,396 - -1.9 2,224,454 - -0.2 2,224,542 + +0.5 2,224,543 - +0.2 2,224,543 - +0.3 2,224,672 + Pf6N2E2_1876 0.19 -2.5 2,224,673 - Pf6N2E2_1876 0.19 -2.9 2,225,113 - Pf6N2E2_1876 0.50 -1.3 2,225,230 - Pf6N2E2_1876 0.59 -0.1 2,225,372 - Pf6N2E2_1876 0.69 -0.9 2,225,542 - Pf6N2E2_1876 0.81 -1.3 2,225,868 - -1.9 2,225,870 - +0.1 2,225,953 - Pf6N2E2_1877 0.11 +0.5 2,226,071 - Pf6N2E2_1877 0.21 +0.7 2,226,534 + Pf6N2E2_1877 0.60 -0.4 2,226,654 + Pf6N2E2_1877 0.70 +0.5 2,226,654 + Pf6N2E2_1877 0.70 +0.1 2,226,654 + Pf6N2E2_1877 0.70 +0.6 2,226,654 + Pf6N2E2_1877 0.70 -1.1 2,226,655 - Pf6N2E2_1877 0.70 +0.4
Or see this region's nucleotide sequence