Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1503

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1500 and Pf6N2E2_1501 are separated by 34 nucleotidesPf6N2E2_1501 and Pf6N2E2_1502 are separated by 111 nucleotidesPf6N2E2_1502 and Pf6N2E2_1503 are separated by 20 nucleotidesPf6N2E2_1503 and Pf6N2E2_1504 are separated by 109 nucleotidesPf6N2E2_1504 and Pf6N2E2_1505 are separated by 28 nucleotides Pf6N2E2_1500 - LysR family transcriptional regulator lrhA, at 1,754,098 to 1,754,955 _1500 Pf6N2E2_1501 - Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17), at 1,754,990 to 1,755,433 _1501 Pf6N2E2_1502 - Two-component system regulatory protein, at 1,755,545 to 1,755,922 _1502 Pf6N2E2_1503 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 1,755,943 to 1,758,126 _1503 Pf6N2E2_1504 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 1,758,236 to 1,759,066 _1504 Pf6N2E2_1505 - Transporter, MFS superfamily, at 1,759,095 to 1,760,291 _1505 Position (kb) 1755 1756 1757 1758 1759Strain fitness (log2 ratio) -2 -1 0 1 2at 1754.979 kb on - strandat 1755.123 kb on + strand, within Pf6N2E2_1501at 1755.123 kb on + strand, within Pf6N2E2_1501at 1755.123 kb on + strand, within Pf6N2E2_1501at 1755.124 kb on - strand, within Pf6N2E2_1501at 1755.355 kb on - strand, within Pf6N2E2_1501at 1755.414 kb on + strandat 1755.414 kb on + strandat 1755.414 kb on + strandat 1755.454 kb on + strandat 1755.454 kb on + strandat 1755.486 kb on + strandat 1755.486 kb on + strandat 1755.486 kb on + strandat 1755.486 kb on + strandat 1755.487 kb on - strandat 1755.715 kb on + strand, within Pf6N2E2_1502at 1755.715 kb on + strand, within Pf6N2E2_1502at 1755.932 kb on + strandat 1755.933 kb on - strandat 1756.001 kb on + strandat 1756.005 kb on + strandat 1756.005 kb on + strandat 1756.005 kb on + strandat 1756.005 kb on + strandat 1756.006 kb on - strandat 1756.199 kb on + strand, within Pf6N2E2_1503at 1756.199 kb on + strand, within Pf6N2E2_1503at 1756.240 kb on - strand, within Pf6N2E2_1503at 1756.240 kb on - strand, within Pf6N2E2_1503at 1756.240 kb on - strand, within Pf6N2E2_1503at 1756.759 kb on - strand, within Pf6N2E2_1503at 1756.839 kb on - strand, within Pf6N2E2_1503at 1756.839 kb on - strand, within Pf6N2E2_1503at 1756.992 kb on + strand, within Pf6N2E2_1503at 1756.992 kb on + strand, within Pf6N2E2_1503at 1757.078 kb on + strand, within Pf6N2E2_1503at 1757.078 kb on + strand, within Pf6N2E2_1503at 1757.078 kb on + strand, within Pf6N2E2_1503at 1757.078 kb on + strand, within Pf6N2E2_1503at 1757.079 kb on - strand, within Pf6N2E2_1503at 1757.079 kb on - strand, within Pf6N2E2_1503at 1757.079 kb on - strand, within Pf6N2E2_1503at 1757.079 kb on - strand, within Pf6N2E2_1503at 1757.079 kb on - strand, within Pf6N2E2_1503at 1757.079 kb on - strand, within Pf6N2E2_1503at 1757.079 kb on - strand, within Pf6N2E2_1503at 1757.079 kb on - strand, within Pf6N2E2_1503at 1757.079 kb on - strand, within Pf6N2E2_1503at 1757.082 kb on + strand, within Pf6N2E2_1503at 1757.083 kb on - strand, within Pf6N2E2_1503at 1757.111 kb on + strand, within Pf6N2E2_1503at 1757.112 kb on - strand, within Pf6N2E2_1503at 1757.112 kb on - strand, within Pf6N2E2_1503at 1757.150 kb on + strand, within Pf6N2E2_1503at 1757.150 kb on + strand, within Pf6N2E2_1503at 1757.150 kb on + strand, within Pf6N2E2_1503at 1757.150 kb on + strand, within Pf6N2E2_1503at 1757.150 kb on + strand, within Pf6N2E2_1503at 1757.276 kb on + strand, within Pf6N2E2_1503at 1757.276 kb on + strand, within Pf6N2E2_1503at 1757.276 kb on + strand, within Pf6N2E2_1503at 1757.277 kb on - strand, within Pf6N2E2_1503at 1757.277 kb on - strand, within Pf6N2E2_1503at 1757.277 kb on - strand, within Pf6N2E2_1503at 1757.344 kb on + strand, within Pf6N2E2_1503at 1757.345 kb on - strand, within Pf6N2E2_1503at 1757.361 kb on + strand, within Pf6N2E2_1503at 1757.544 kb on - strand, within Pf6N2E2_1503at 1757.544 kb on - strand, within Pf6N2E2_1503at 1757.889 kb on + strand, within Pf6N2E2_1503at 1757.890 kb on - strand, within Pf6N2E2_1503at 1757.966 kb on - strandat 1757.988 kb on - strandat 1757.988 kb on - strandat 1757.988 kb on - strandat 1758.020 kb on + strandat 1758.021 kb on - strandat 1758.021 kb on - strandat 1758.078 kb on - strandat 1758.107 kb on - strandat 1758.181 kb on + strandat 1758.181 kb on + strandat 1758.182 kb on - strandat 1758.182 kb on - strandat 1758.182 kb on - strandat 1758.182 kb on - strandat 1758.182 kb on - strandat 1758.182 kb on - strandat 1758.189 kb on + strandat 1758.190 kb on - strandat 1758.472 kb on - strand, within Pf6N2E2_1504at 1758.943 kb on - strand, within Pf6N2E2_1504at 1758.943 kb on - strand, within Pf6N2E2_1504at 1758.963 kb on + strand, within Pf6N2E2_1504at 1758.963 kb on + strand, within Pf6N2E2_1504at 1759.048 kb on + strandat 1759.051 kb on + strandat 1759.051 kb on + strandat 1759.051 kb on + strandat 1759.051 kb on + strandat 1759.052 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,754,979 - +0.1
1,755,123 + Pf6N2E2_1501 0.30 -0.7
1,755,123 + Pf6N2E2_1501 0.30 -0.1
1,755,123 + Pf6N2E2_1501 0.30 -0.9
1,755,124 - Pf6N2E2_1501 0.30 -0.5
1,755,355 - Pf6N2E2_1501 0.82 -0.9
1,755,414 + +0.4
1,755,414 + -0.6
1,755,414 + +0.6
1,755,454 + -0.0
1,755,454 + -0.7
1,755,486 + +0.4
1,755,486 + +0.8
1,755,486 + +0.7
1,755,486 + -0.2
1,755,487 - -0.1
1,755,715 + Pf6N2E2_1502 0.45 -1.7
1,755,715 + Pf6N2E2_1502 0.45 -0.0
1,755,932 + +1.1
1,755,933 - -0.1
1,756,001 + -0.4
1,756,005 + -0.1
1,756,005 + -0.7
1,756,005 + -0.1
1,756,005 + +0.6
1,756,006 - -0.3
1,756,199 + Pf6N2E2_1503 0.12 +0.3
1,756,199 + Pf6N2E2_1503 0.12 +0.7
1,756,240 - Pf6N2E2_1503 0.14 -0.4
1,756,240 - Pf6N2E2_1503 0.14 -0.3
1,756,240 - Pf6N2E2_1503 0.14 +0.1
1,756,759 - Pf6N2E2_1503 0.37 +0.9
1,756,839 - Pf6N2E2_1503 0.41 -0.3
1,756,839 - Pf6N2E2_1503 0.41 +0.9
1,756,992 + Pf6N2E2_1503 0.48 +1.6
1,756,992 + Pf6N2E2_1503 0.48 +0.6
1,757,078 + Pf6N2E2_1503 0.52 +0.9
1,757,078 + Pf6N2E2_1503 0.52 +0.8
1,757,078 + Pf6N2E2_1503 0.52 -1.1
1,757,078 + Pf6N2E2_1503 0.52 +0.5
1,757,079 - Pf6N2E2_1503 0.52 +1.6
1,757,079 - Pf6N2E2_1503 0.52 +0.9
1,757,079 - Pf6N2E2_1503 0.52 +0.6
1,757,079 - Pf6N2E2_1503 0.52 -0.6
1,757,079 - Pf6N2E2_1503 0.52 -1.2
1,757,079 - Pf6N2E2_1503 0.52 +0.9
1,757,079 - Pf6N2E2_1503 0.52 -0.5
1,757,079 - Pf6N2E2_1503 0.52 -0.4
1,757,079 - Pf6N2E2_1503 0.52 -0.1
1,757,082 + Pf6N2E2_1503 0.52 +1.2
1,757,083 - Pf6N2E2_1503 0.52 +1.1
1,757,111 + Pf6N2E2_1503 0.53 +0.6
1,757,112 - Pf6N2E2_1503 0.54 +0.3
1,757,112 - Pf6N2E2_1503 0.54 +2.3
1,757,150 + Pf6N2E2_1503 0.55 -2.5
1,757,150 + Pf6N2E2_1503 0.55 +1.4
1,757,150 + Pf6N2E2_1503 0.55 -1.0
1,757,150 + Pf6N2E2_1503 0.55 +0.8
1,757,150 + Pf6N2E2_1503 0.55 -0.0
1,757,276 + Pf6N2E2_1503 0.61 -1.0
1,757,276 + Pf6N2E2_1503 0.61 +0.4
1,757,276 + Pf6N2E2_1503 0.61 +1.2
1,757,277 - Pf6N2E2_1503 0.61 +0.6
1,757,277 - Pf6N2E2_1503 0.61 -0.2
1,757,277 - Pf6N2E2_1503 0.61 +0.7
1,757,344 + Pf6N2E2_1503 0.64 +1.3
1,757,345 - Pf6N2E2_1503 0.64 +0.0
1,757,361 + Pf6N2E2_1503 0.65 -0.2
1,757,544 - Pf6N2E2_1503 0.73 +1.7
1,757,544 - Pf6N2E2_1503 0.73 +0.4
1,757,889 + Pf6N2E2_1503 0.89 +0.1
1,757,890 - Pf6N2E2_1503 0.89 +1.0
1,757,966 - +1.0
1,757,988 - -0.3
1,757,988 - +0.0
1,757,988 - -0.4
1,758,020 + +0.3
1,758,021 - +1.2
1,758,021 - +0.5
1,758,078 - -0.1
1,758,107 - -0.2
1,758,181 + +0.7
1,758,181 + -0.5
1,758,182 - +1.3
1,758,182 - +0.3
1,758,182 - -0.5
1,758,182 - +0.5
1,758,182 - +0.9
1,758,182 - +0.5
1,758,189 + -1.3
1,758,190 - -0.6
1,758,472 - Pf6N2E2_1504 0.28 -0.3
1,758,943 - Pf6N2E2_1504 0.85 -0.1
1,758,943 - Pf6N2E2_1504 0.85 -0.7
1,758,963 + Pf6N2E2_1504 0.87 +0.2
1,758,963 + Pf6N2E2_1504 0.87 +0.5
1,759,048 + +0.3
1,759,051 + -0.5
1,759,051 + -1.6
1,759,051 + +1.5
1,759,051 + -0.3
1,759,052 - -0.3

Or see this region's nucleotide sequence