Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_382

Experiment: LB no stress 24 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_381 and Pf6N2E2_382 are separated by 249 nucleotides Pf6N2E2_381 - hypothetical protein, at 447,554 to 448,942 _381 Pf6N2E2_382 - RNA:NAD 2'-phosphotransferase, at 449,192 to 449,776 _382 Position (kb) 449 450Strain fitness (log2 ratio) -2 -1 0 1 2 3at 448.201 kb on + strand, within Pf6N2E2_381at 448.201 kb on + strand, within Pf6N2E2_381at 448.202 kb on - strand, within Pf6N2E2_381at 448.356 kb on + strand, within Pf6N2E2_381at 448.356 kb on + strand, within Pf6N2E2_381at 448.357 kb on - strand, within Pf6N2E2_381at 448.357 kb on - strand, within Pf6N2E2_381at 448.360 kb on - strand, within Pf6N2E2_381at 448.404 kb on + strand, within Pf6N2E2_381at 448.404 kb on + strand, within Pf6N2E2_381at 448.404 kb on + strand, within Pf6N2E2_381at 448.405 kb on - strand, within Pf6N2E2_381at 448.470 kb on + strand, within Pf6N2E2_381at 448.588 kb on + strand, within Pf6N2E2_381at 448.589 kb on - strand, within Pf6N2E2_381at 448.683 kb on + strand, within Pf6N2E2_381at 448.708 kb on - strand, within Pf6N2E2_381at 448.708 kb on - strand, within Pf6N2E2_381at 448.769 kb on + strand, within Pf6N2E2_381at 448.769 kb on + strand, within Pf6N2E2_381at 448.769 kb on + strand, within Pf6N2E2_381at 448.769 kb on + strand, within Pf6N2E2_381at 448.769 kb on + strand, within Pf6N2E2_381at 448.770 kb on - strand, within Pf6N2E2_381at 448.770 kb on - strand, within Pf6N2E2_381at 448.956 kb on - strandat 449.004 kb on + strandat 449.004 kb on + strandat 449.009 kb on + strandat 449.009 kb on + strandat 449.176 kb on + strandat 449.177 kb on - strandat 449.177 kb on - strandat 449.177 kb on - strandat 449.177 kb on - strandat 449.177 kb on - strandat 449.178 kb on + strandat 449.197 kb on + strandat 449.197 kb on + strandat 449.198 kb on - strandat 449.206 kb on + strandat 449.206 kb on + strandat 449.207 kb on - strandat 449.214 kb on - strandat 449.226 kb on + strandat 449.226 kb on + strandat 449.227 kb on - strandat 449.227 kb on - strandat 449.306 kb on + strand, within Pf6N2E2_382at 449.307 kb on - strand, within Pf6N2E2_382at 449.307 kb on - strand, within Pf6N2E2_382at 449.337 kb on + strand, within Pf6N2E2_382at 449.457 kb on + strand, within Pf6N2E2_382at 449.457 kb on + strand, within Pf6N2E2_382at 449.457 kb on + strand, within Pf6N2E2_382at 449.457 kb on + strand, within Pf6N2E2_382at 449.458 kb on - strand, within Pf6N2E2_382at 449.458 kb on - strand, within Pf6N2E2_382at 449.458 kb on - strand, within Pf6N2E2_382at 449.458 kb on - strand, within Pf6N2E2_382at 449.604 kb on + strand, within Pf6N2E2_382at 449.614 kb on + strand, within Pf6N2E2_382at 449.615 kb on - strand, within Pf6N2E2_382at 449.647 kb on + strand, within Pf6N2E2_382at 449.648 kb on - strand, within Pf6N2E2_382at 449.682 kb on - strand, within Pf6N2E2_382at 449.682 kb on - strand, within Pf6N2E2_382at 449.708 kb on + strand, within Pf6N2E2_382at 449.709 kb on - strand, within Pf6N2E2_382at 449.711 kb on + strand, within Pf6N2E2_382at 449.711 kb on + strandat 449.711 kb on + strand, within Pf6N2E2_382at 449.711 kb on + strand, within Pf6N2E2_382at 449.711 kb on + strand, within Pf6N2E2_382at 449.712 kb on - strand, within Pf6N2E2_382at 449.712 kb on - strand, within Pf6N2E2_382at 449.715 kb on + strand, within Pf6N2E2_382at 449.715 kb on + strand, within Pf6N2E2_382at 449.715 kb on + strand, within Pf6N2E2_382at 449.716 kb on - strand, within Pf6N2E2_382at 449.791 kb on + strandat 449.791 kb on + strandat 449.792 kb on - strandat 449.792 kb on - strandat 449.792 kb on - strandat 449.794 kb on + strandat 449.794 kb on + strandat 449.795 kb on - strandat 449.795 kb on - strandat 449.795 kb on - strandat 449.809 kb on + strandat 449.809 kb on + strandat 449.810 kb on - strandat 449.810 kb on - strandat 449.810 kb on - strandat 449.879 kb on + strandat 450.008 kb on - strandat 450.008 kb on - strandat 450.008 kb on - strandat 450.008 kb on - strandat 450.010 kb on + strandat 450.011 kb on - strandat 450.011 kb on - strandat 450.052 kb on + strandat 450.053 kb on - strandat 450.053 kb on - strandat 450.222 kb on + strandat 450.270 kb on + strandat 450.270 kb on + strandat 450.270 kb on + strandat 450.270 kb on + strandat 450.270 kb on + strandat 450.271 kb on - strandat 450.271 kb on - strandat 450.271 kb on - strandat 450.271 kb on - strandat 450.307 kb on + strandat 450.307 kb on + strandat 450.308 kb on - strandat 450.370 kb on + strandat 450.402 kb on + strandat 450.402 kb on + strandat 450.402 kb on + strandat 450.402 kb on + strandat 450.403 kb on - strandat 450.403 kb on - strandat 450.403 kb on - strandat 450.403 kb on - strandat 450.403 kb on - strandat 450.403 kb on - strandat 450.403 kb on - strandat 450.403 kb on - strandat 450.405 kb on - strandat 450.405 kb on - strandat 450.405 kb on - strandat 450.405 kb on - strandat 450.438 kb on + strandat 450.438 kb on + strandat 450.438 kb on + strandat 450.439 kb on - strandat 450.757 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress 24 hours
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448,201 + Pf6N2E2_381 0.47 +0.3
448,201 + Pf6N2E2_381 0.47 -1.3
448,202 - Pf6N2E2_381 0.47 +0.8
448,356 + Pf6N2E2_381 0.58 -0.4
448,356 + Pf6N2E2_381 0.58 -0.5
448,357 - Pf6N2E2_381 0.58 +2.3
448,357 - Pf6N2E2_381 0.58 +0.8
448,360 - Pf6N2E2_381 0.58 -1.9
448,404 + Pf6N2E2_381 0.61 -1.6
448,404 + Pf6N2E2_381 0.61 +0.3
448,404 + Pf6N2E2_381 0.61 -1.4
448,405 - Pf6N2E2_381 0.61 +0.3
448,470 + Pf6N2E2_381 0.66 +0.7
448,588 + Pf6N2E2_381 0.74 -0.9
448,589 - Pf6N2E2_381 0.75 -0.0
448,683 + Pf6N2E2_381 0.81 +0.2
448,708 - Pf6N2E2_381 0.83 -0.5
448,708 - Pf6N2E2_381 0.83 +0.3
448,769 + Pf6N2E2_381 0.87 +0.3
448,769 + Pf6N2E2_381 0.87 -0.4
448,769 + Pf6N2E2_381 0.87 -0.4
448,769 + Pf6N2E2_381 0.87 +0.3
448,769 + Pf6N2E2_381 0.87 +1.8
448,770 - Pf6N2E2_381 0.88 -0.5
448,770 - Pf6N2E2_381 0.88 +0.3
448,956 - +0.5
449,004 + +0.9
449,004 + +0.4
449,009 + +0.3
449,009 + -0.1
449,176 + -0.3
449,177 - +0.1
449,177 - +0.1
449,177 - -0.1
449,177 - -0.5
449,177 - +0.6
449,178 + +1.0
449,197 + -0.2
449,197 + +0.3
449,198 - +0.9
449,206 + +0.9
449,206 + -0.5
449,207 - -0.3
449,214 - +0.2
449,226 + +0.5
449,226 + -0.0
449,227 - +0.4
449,227 - -0.1
449,306 + Pf6N2E2_382 0.19 -0.1
449,307 - Pf6N2E2_382 0.20 -0.4
449,307 - Pf6N2E2_382 0.20 +0.6
449,337 + Pf6N2E2_382 0.25 +1.0
449,457 + Pf6N2E2_382 0.45 -0.3
449,457 + Pf6N2E2_382 0.45 +2.2
449,457 + Pf6N2E2_382 0.45 -1.1
449,457 + Pf6N2E2_382 0.45 -0.0
449,458 - Pf6N2E2_382 0.45 +0.5
449,458 - Pf6N2E2_382 0.45 +0.5
449,458 - Pf6N2E2_382 0.45 +0.2
449,458 - Pf6N2E2_382 0.45 +0.6
449,604 + Pf6N2E2_382 0.70 +0.8
449,614 + Pf6N2E2_382 0.72 -0.0
449,615 - Pf6N2E2_382 0.72 +1.5
449,647 + Pf6N2E2_382 0.78 +1.3
449,648 - Pf6N2E2_382 0.78 +1.8
449,682 - Pf6N2E2_382 0.84 -0.5
449,682 - Pf6N2E2_382 0.84 +0.5
449,708 + Pf6N2E2_382 0.88 +0.7
449,709 - Pf6N2E2_382 0.88 -2.0
449,711 + Pf6N2E2_382 0.89 -1.8
449,711 + +1.3
449,711 + Pf6N2E2_382 0.89 -0.6
449,711 + Pf6N2E2_382 0.89 +0.1
449,711 + Pf6N2E2_382 0.89 +0.8
449,712 - Pf6N2E2_382 0.89 +0.7
449,712 - Pf6N2E2_382 0.89 +0.1
449,715 + Pf6N2E2_382 0.89 -0.3
449,715 + Pf6N2E2_382 0.89 +0.5
449,715 + Pf6N2E2_382 0.89 +0.0
449,716 - Pf6N2E2_382 0.90 +1.4
449,791 + -0.6
449,791 + +0.5
449,792 - +0.2
449,792 - +0.5
449,792 - +0.6
449,794 + +0.2
449,794 + +3.3
449,795 - -0.3
449,795 - -1.0
449,795 - +0.1
449,809 + -1.3
449,809 + +0.7
449,810 - -0.7
449,810 - -0.2
449,810 - -0.7
449,879 + -0.7
450,008 - +1.3
450,008 - +0.8
450,008 - +0.3
450,008 - +0.4
450,010 + -0.1
450,011 - +0.1
450,011 - -0.4
450,052 + +0.5
450,053 - +0.5
450,053 - -0.1
450,222 + -0.5
450,270 + +0.4
450,270 + +1.6
450,270 + +0.4
450,270 + -0.8
450,270 + +1.0
450,271 - -1.0
450,271 - -0.2
450,271 - +0.7
450,271 - +0.6
450,307 + -0.3
450,307 + -0.1
450,308 - -0.1
450,370 + +0.7
450,402 + -0.9
450,402 + +0.6
450,402 + +0.7
450,402 + -1.3
450,403 - +0.6
450,403 - -0.6
450,403 - -0.5
450,403 - +0.3
450,403 - -0.5
450,403 - +0.1
450,403 - -0.9
450,403 - +0.4
450,405 - -0.5
450,405 - +0.8
450,405 - +0.9
450,405 - +1.4
450,438 + -1.0
450,438 + +0.9
450,438 + +0.1
450,439 - +0.5
450,757 + +0.5

Or see this region's nucleotide sequence