Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1479

Experiment: LB no stress 24 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1477 and Pf6N2E2_1478 are separated by 37 nucleotidesPf6N2E2_1478 and Pf6N2E2_1479 are separated by 160 nucleotidesPf6N2E2_1479 and Pf6N2E2_1480 are separated by 20 nucleotides Pf6N2E2_1477 - hypothetical protein, at 1,726,379 to 1,726,672 _1477 Pf6N2E2_1478 - hypothetical protein, at 1,726,710 to 1,727,276 _1478 Pf6N2E2_1479 - Subtilisin-like serine proteases, at 1,727,437 to 1,729,140 _1479 Pf6N2E2_1480 - SAM-dependent methyltransferases, at 1,729,161 to 1,729,868 _1480 Position (kb) 1727 1728 1729 1730Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1726.450 kb on + strand, within Pf6N2E2_1477at 1726.450 kb on + strand, within Pf6N2E2_1477at 1726.450 kb on + strand, within Pf6N2E2_1477at 1726.450 kb on + strand, within Pf6N2E2_1477at 1726.450 kb on + strand, within Pf6N2E2_1477at 1726.450 kb on + strand, within Pf6N2E2_1477at 1726.451 kb on - strand, within Pf6N2E2_1477at 1726.451 kb on - strand, within Pf6N2E2_1477at 1726.451 kb on - strand, within Pf6N2E2_1477at 1726.607 kb on + strand, within Pf6N2E2_1477at 1726.607 kb on + strand, within Pf6N2E2_1477at 1726.607 kb on + strand, within Pf6N2E2_1477at 1726.746 kb on - strandat 1726.843 kb on + strand, within Pf6N2E2_1478at 1726.843 kb on + strand, within Pf6N2E2_1478at 1726.843 kb on + strand, within Pf6N2E2_1478at 1726.903 kb on - strand, within Pf6N2E2_1478at 1726.903 kb on - strand, within Pf6N2E2_1478at 1726.903 kb on - strand, within Pf6N2E2_1478at 1727.026 kb on - strand, within Pf6N2E2_1478at 1727.026 kb on - strand, within Pf6N2E2_1478at 1727.038 kb on - strand, within Pf6N2E2_1478at 1727.070 kb on + strand, within Pf6N2E2_1478at 1727.070 kb on + strand, within Pf6N2E2_1478at 1727.070 kb on + strand, within Pf6N2E2_1478at 1727.070 kb on + strand, within Pf6N2E2_1478at 1727.070 kb on + strand, within Pf6N2E2_1478at 1727.070 kb on + strand, within Pf6N2E2_1478at 1727.071 kb on - strand, within Pf6N2E2_1478at 1727.071 kb on - strand, within Pf6N2E2_1478at 1727.184 kb on + strand, within Pf6N2E2_1478at 1727.184 kb on + strand, within Pf6N2E2_1478at 1727.184 kb on + strand, within Pf6N2E2_1478at 1727.184 kb on + strand, within Pf6N2E2_1478at 1727.185 kb on - strand, within Pf6N2E2_1478at 1727.185 kb on - strand, within Pf6N2E2_1478at 1727.185 kb on - strand, within Pf6N2E2_1478at 1727.185 kb on - strand, within Pf6N2E2_1478at 1727.258 kb on - strandat 1727.268 kb on - strandat 1727.331 kb on + strandat 1727.331 kb on + strandat 1727.331 kb on + strandat 1727.332 kb on - strandat 1727.332 kb on - strandat 1727.382 kb on - strandat 1727.400 kb on + strandat 1727.711 kb on + strand, within Pf6N2E2_1479at 1727.711 kb on + strand, within Pf6N2E2_1479at 1727.712 kb on - strand, within Pf6N2E2_1479at 1727.712 kb on - strand, within Pf6N2E2_1479at 1727.735 kb on + strand, within Pf6N2E2_1479at 1727.764 kb on + strandat 1727.764 kb on + strand, within Pf6N2E2_1479at 1727.765 kb on - strand, within Pf6N2E2_1479at 1727.840 kb on - strand, within Pf6N2E2_1479at 1727.840 kb on - strand, within Pf6N2E2_1479at 1727.881 kb on + strand, within Pf6N2E2_1479at 1728.718 kb on - strand, within Pf6N2E2_1479at 1728.745 kb on + strand, within Pf6N2E2_1479at 1728.746 kb on - strand, within Pf6N2E2_1479at 1728.746 kb on - strand, within Pf6N2E2_1479at 1728.951 kb on - strand, within Pf6N2E2_1479at 1728.951 kb on - strand, within Pf6N2E2_1479at 1729.146 kb on + strandat 1729.146 kb on + strandat 1729.147 kb on - strandat 1729.147 kb on - strandat 1729.147 kb on - strandat 1729.157 kb on + strandat 1729.157 kb on + strandat 1729.157 kb on + strandat 1729.385 kb on - strand, within Pf6N2E2_1480at 1729.428 kb on + strand, within Pf6N2E2_1480at 1729.549 kb on - strand, within Pf6N2E2_1480at 1729.602 kb on + strand, within Pf6N2E2_1480at 1729.602 kb on + strand, within Pf6N2E2_1480at 1729.602 kb on + strand, within Pf6N2E2_1480at 1729.756 kb on - strand, within Pf6N2E2_1480at 1729.775 kb on - strand, within Pf6N2E2_1480at 1729.775 kb on - strand, within Pf6N2E2_1480at 1729.775 kb on - strand, within Pf6N2E2_1480at 1729.790 kb on + strand, within Pf6N2E2_1480at 1729.791 kb on - strand, within Pf6N2E2_1480at 1729.903 kb on - strandat 1729.903 kb on - strandat 1729.955 kb on - strandat 1729.955 kb on - strandat 1729.955 kb on - strandat 1729.955 kb on - strandat 1729.981 kb on + strandat 1730.135 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress 24 hours
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1,726,450 + Pf6N2E2_1477 0.24 +0.2
1,726,450 + Pf6N2E2_1477 0.24 +0.5
1,726,450 + Pf6N2E2_1477 0.24 -1.1
1,726,450 + Pf6N2E2_1477 0.24 -0.8
1,726,450 + Pf6N2E2_1477 0.24 -0.2
1,726,450 + Pf6N2E2_1477 0.24 +1.0
1,726,451 - Pf6N2E2_1477 0.24 +0.6
1,726,451 - Pf6N2E2_1477 0.24 -2.7
1,726,451 - Pf6N2E2_1477 0.24 +0.4
1,726,607 + Pf6N2E2_1477 0.78 -1.3
1,726,607 + Pf6N2E2_1477 0.78 -0.1
1,726,607 + Pf6N2E2_1477 0.78 -0.2
1,726,746 - +1.0
1,726,843 + Pf6N2E2_1478 0.23 -0.9
1,726,843 + Pf6N2E2_1478 0.23 -0.1
1,726,843 + Pf6N2E2_1478 0.23 -1.3
1,726,903 - Pf6N2E2_1478 0.34 +0.4
1,726,903 - Pf6N2E2_1478 0.34 +0.4
1,726,903 - Pf6N2E2_1478 0.34 +2.4
1,727,026 - Pf6N2E2_1478 0.56 +0.3
1,727,026 - Pf6N2E2_1478 0.56 +0.2
1,727,038 - Pf6N2E2_1478 0.58 +0.2
1,727,070 + Pf6N2E2_1478 0.63 -3.4
1,727,070 + Pf6N2E2_1478 0.63 -0.3
1,727,070 + Pf6N2E2_1478 0.63 +0.5
1,727,070 + Pf6N2E2_1478 0.63 -0.1
1,727,070 + Pf6N2E2_1478 0.63 +0.2
1,727,070 + Pf6N2E2_1478 0.63 -1.0
1,727,071 - Pf6N2E2_1478 0.64 -0.5
1,727,071 - Pf6N2E2_1478 0.64 -0.3
1,727,184 + Pf6N2E2_1478 0.84 +0.8
1,727,184 + Pf6N2E2_1478 0.84 +0.7
1,727,184 + Pf6N2E2_1478 0.84 +0.9
1,727,184 + Pf6N2E2_1478 0.84 -0.0
1,727,185 - Pf6N2E2_1478 0.84 -0.7
1,727,185 - Pf6N2E2_1478 0.84 +0.5
1,727,185 - Pf6N2E2_1478 0.84 -2.1
1,727,185 - Pf6N2E2_1478 0.84 +1.9
1,727,258 - -0.9
1,727,268 - +0.3
1,727,331 + +0.3
1,727,331 + +0.1
1,727,331 + +0.6
1,727,332 - +0.4
1,727,332 - -0.5
1,727,382 - -0.5
1,727,400 + -2.0
1,727,711 + Pf6N2E2_1479 0.16 +0.2
1,727,711 + Pf6N2E2_1479 0.16 +0.9
1,727,712 - Pf6N2E2_1479 0.16 +0.4
1,727,712 - Pf6N2E2_1479 0.16 -0.1
1,727,735 + Pf6N2E2_1479 0.17 +2.0
1,727,764 + +2.6
1,727,764 + Pf6N2E2_1479 0.19 -0.2
1,727,765 - Pf6N2E2_1479 0.19 +1.0
1,727,840 - Pf6N2E2_1479 0.24 -0.0
1,727,840 - Pf6N2E2_1479 0.24 +0.4
1,727,881 + Pf6N2E2_1479 0.26 +0.1
1,728,718 - Pf6N2E2_1479 0.75 +2.0
1,728,745 + Pf6N2E2_1479 0.77 +0.7
1,728,746 - Pf6N2E2_1479 0.77 -2.1
1,728,746 - Pf6N2E2_1479 0.77 -0.2
1,728,951 - Pf6N2E2_1479 0.89 +0.8
1,728,951 - Pf6N2E2_1479 0.89 +0.3
1,729,146 + +0.5
1,729,146 + +1.2
1,729,147 - +1.1
1,729,147 - +0.3
1,729,147 - -0.2
1,729,157 + +0.6
1,729,157 + +0.6
1,729,157 + +0.3
1,729,385 - Pf6N2E2_1480 0.32 -0.3
1,729,428 + Pf6N2E2_1480 0.38 +0.9
1,729,549 - Pf6N2E2_1480 0.55 -0.2
1,729,602 + Pf6N2E2_1480 0.62 +0.9
1,729,602 + Pf6N2E2_1480 0.62 +1.5
1,729,602 + Pf6N2E2_1480 0.62 +0.2
1,729,756 - Pf6N2E2_1480 0.84 +0.0
1,729,775 - Pf6N2E2_1480 0.87 -0.0
1,729,775 - Pf6N2E2_1480 0.87 -0.1
1,729,775 - Pf6N2E2_1480 0.87 +0.1
1,729,790 + Pf6N2E2_1480 0.89 +0.3
1,729,791 - Pf6N2E2_1480 0.89 -0.5
1,729,903 - +0.6
1,729,903 - -0.6
1,729,955 - -0.5
1,729,955 - -0.1
1,729,955 - +1.0
1,729,955 - -0.3
1,729,981 + -0.5
1,730,135 - -0.7

Or see this region's nucleotide sequence