Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_808

Experiment: LB no stress 24 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_807 and Pf6N2E2_808 are separated by 39 nucleotidesPf6N2E2_808 and Pf6N2E2_809 are separated by 10 nucleotides Pf6N2E2_807 - Various polyols ABC transporter, ATP-binding component, at 939,179 to 940,282 _807 Pf6N2E2_808 - Various polyols ABC transporter, permease component 2, at 940,322 to 941,152 _808 Pf6N2E2_809 - Various polyols ABC transporter, permease component 1, at 941,163 to 942,098 _809 Position (kb) 940 941 942Strain fitness (log2 ratio) -2 -1 0 1at 939.619 kb on - strand, within Pf6N2E2_807at 939.717 kb on + strand, within Pf6N2E2_807at 939.717 kb on + strand, within Pf6N2E2_807at 939.717 kb on + strand, within Pf6N2E2_807at 939.717 kb on + strand, within Pf6N2E2_807at 939.717 kb on + strand, within Pf6N2E2_807at 939.717 kb on + strand, within Pf6N2E2_807at 939.717 kb on + strand, within Pf6N2E2_807at 939.718 kb on - strand, within Pf6N2E2_807at 939.718 kb on - strand, within Pf6N2E2_807at 939.718 kb on - strand, within Pf6N2E2_807at 939.718 kb on - strand, within Pf6N2E2_807at 939.718 kb on - strand, within Pf6N2E2_807at 939.718 kb on - strand, within Pf6N2E2_807at 939.718 kb on - strand, within Pf6N2E2_807at 939.718 kb on - strand, within Pf6N2E2_807at 939.718 kb on - strand, within Pf6N2E2_807at 939.858 kb on - strand, within Pf6N2E2_807at 940.023 kb on + strand, within Pf6N2E2_807at 940.024 kb on - strand, within Pf6N2E2_807at 940.032 kb on + strand, within Pf6N2E2_807at 940.032 kb on + strand, within Pf6N2E2_807at 940.032 kb on + strand, within Pf6N2E2_807at 940.032 kb on + strand, within Pf6N2E2_807at 940.032 kb on + strand, within Pf6N2E2_807at 940.032 kb on + strand, within Pf6N2E2_807at 940.033 kb on - strand, within Pf6N2E2_807at 940.033 kb on - strand, within Pf6N2E2_807at 940.033 kb on - strand, within Pf6N2E2_807at 940.306 kb on + strandat 940.306 kb on + strandat 940.314 kb on - strandat 940.324 kb on - strandat 940.455 kb on + strand, within Pf6N2E2_808at 940.455 kb on + strand, within Pf6N2E2_808at 940.455 kb on + strand, within Pf6N2E2_808at 940.590 kb on - strand, within Pf6N2E2_808at 940.590 kb on - strand, within Pf6N2E2_808at 940.610 kb on + strand, within Pf6N2E2_808at 940.611 kb on - strand, within Pf6N2E2_808at 940.668 kb on + strand, within Pf6N2E2_808at 940.669 kb on - strand, within Pf6N2E2_808at 940.674 kb on + strand, within Pf6N2E2_808at 940.674 kb on + strand, within Pf6N2E2_808at 940.674 kb on + strand, within Pf6N2E2_808at 940.674 kb on + strand, within Pf6N2E2_808at 940.674 kb on + strand, within Pf6N2E2_808at 940.675 kb on - strand, within Pf6N2E2_808at 940.675 kb on - strand, within Pf6N2E2_808at 940.713 kb on + strand, within Pf6N2E2_808at 940.713 kb on + strand, within Pf6N2E2_808at 940.717 kb on + strand, within Pf6N2E2_808at 940.717 kb on + strand, within Pf6N2E2_808at 940.770 kb on + strand, within Pf6N2E2_808at 940.771 kb on - strand, within Pf6N2E2_808at 940.831 kb on + strand, within Pf6N2E2_808at 940.831 kb on + strand, within Pf6N2E2_808at 940.831 kb on + strand, within Pf6N2E2_808at 940.831 kb on + strand, within Pf6N2E2_808at 940.831 kb on + strand, within Pf6N2E2_808at 940.832 kb on - strand, within Pf6N2E2_808at 940.832 kb on - strand, within Pf6N2E2_808at 940.832 kb on - strand, within Pf6N2E2_808at 940.832 kb on - strand, within Pf6N2E2_808at 940.832 kb on - strand, within Pf6N2E2_808at 940.832 kb on - strand, within Pf6N2E2_808at 940.951 kb on - strand, within Pf6N2E2_808at 940.951 kb on - strand, within Pf6N2E2_808at 940.951 kb on - strand, within Pf6N2E2_808at 940.951 kb on - strand, within Pf6N2E2_808at 940.978 kb on - strand, within Pf6N2E2_808at 940.978 kb on - strand, within Pf6N2E2_808at 940.978 kb on - strand, within Pf6N2E2_808at 940.978 kb on - strand, within Pf6N2E2_808at 940.978 kb on - strand, within Pf6N2E2_808at 941.293 kb on + strand, within Pf6N2E2_809at 941.293 kb on + strand, within Pf6N2E2_809at 941.294 kb on - strand, within Pf6N2E2_809at 941.575 kb on - strand, within Pf6N2E2_809at 941.872 kb on + strand, within Pf6N2E2_809at 941.873 kb on - strand, within Pf6N2E2_809at 941.926 kb on + strand, within Pf6N2E2_809at 941.945 kb on - strand, within Pf6N2E2_809at 941.945 kb on - strand, within Pf6N2E2_809at 942.092 kb on + strandat 942.092 kb on + strandat 942.092 kb on + strandat 942.092 kb on + strandat 942.093 kb on - strandat 942.106 kb on + strandat 942.106 kb on + strandat 942.106 kb on + strandat 942.106 kb on + strandat 942.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress 24 hours
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939,619 - Pf6N2E2_807 0.40 -0.2
939,717 + Pf6N2E2_807 0.49 +0.7
939,717 + Pf6N2E2_807 0.49 +0.3
939,717 + Pf6N2E2_807 0.49 +1.1
939,717 + Pf6N2E2_807 0.49 +0.7
939,717 + Pf6N2E2_807 0.49 -0.6
939,717 + Pf6N2E2_807 0.49 -0.2
939,717 + Pf6N2E2_807 0.49 +0.2
939,718 - Pf6N2E2_807 0.49 -0.5
939,718 - Pf6N2E2_807 0.49 +0.8
939,718 - Pf6N2E2_807 0.49 +1.5
939,718 - Pf6N2E2_807 0.49 +0.2
939,718 - Pf6N2E2_807 0.49 +0.9
939,718 - Pf6N2E2_807 0.49 +0.2
939,718 - Pf6N2E2_807 0.49 -0.1
939,718 - Pf6N2E2_807 0.49 +0.2
939,718 - Pf6N2E2_807 0.49 +1.0
939,858 - Pf6N2E2_807 0.62 -1.3
940,023 + Pf6N2E2_807 0.76 +0.1
940,024 - Pf6N2E2_807 0.77 +0.2
940,032 + Pf6N2E2_807 0.77 +0.4
940,032 + Pf6N2E2_807 0.77 +0.3
940,032 + Pf6N2E2_807 0.77 -0.5
940,032 + Pf6N2E2_807 0.77 +0.5
940,032 + Pf6N2E2_807 0.77 +0.3
940,032 + Pf6N2E2_807 0.77 +0.3
940,033 - Pf6N2E2_807 0.77 -0.8
940,033 - Pf6N2E2_807 0.77 -1.0
940,033 - Pf6N2E2_807 0.77 -0.2
940,306 + -0.1
940,306 + +0.9
940,314 - +0.1
940,324 - -0.6
940,455 + Pf6N2E2_808 0.16 -0.5
940,455 + Pf6N2E2_808 0.16 -2.0
940,455 + Pf6N2E2_808 0.16 -0.9
940,590 - Pf6N2E2_808 0.32 -0.5
940,590 - Pf6N2E2_808 0.32 -0.7
940,610 + Pf6N2E2_808 0.35 -1.1
940,611 - Pf6N2E2_808 0.35 -0.1
940,668 + Pf6N2E2_808 0.42 -0.1
940,669 - Pf6N2E2_808 0.42 -0.7
940,674 + Pf6N2E2_808 0.42 -0.5
940,674 + Pf6N2E2_808 0.42 -0.6
940,674 + Pf6N2E2_808 0.42 -1.3
940,674 + Pf6N2E2_808 0.42 -1.5
940,674 + Pf6N2E2_808 0.42 +1.5
940,675 - Pf6N2E2_808 0.42 +0.3
940,675 - Pf6N2E2_808 0.42 -1.4
940,713 + Pf6N2E2_808 0.47 +0.0
940,713 + Pf6N2E2_808 0.47 +0.7
940,717 + Pf6N2E2_808 0.48 -0.1
940,717 + Pf6N2E2_808 0.48 -0.8
940,770 + Pf6N2E2_808 0.54 -0.0
940,771 - Pf6N2E2_808 0.54 +0.8
940,831 + Pf6N2E2_808 0.61 +0.2
940,831 + Pf6N2E2_808 0.61 -1.1
940,831 + Pf6N2E2_808 0.61 +0.8
940,831 + Pf6N2E2_808 0.61 -0.0
940,831 + Pf6N2E2_808 0.61 +0.1
940,832 - Pf6N2E2_808 0.61 -0.5
940,832 - Pf6N2E2_808 0.61 -2.2
940,832 - Pf6N2E2_808 0.61 +0.7
940,832 - Pf6N2E2_808 0.61 +0.9
940,832 - Pf6N2E2_808 0.61 -1.2
940,832 - Pf6N2E2_808 0.61 +0.1
940,951 - Pf6N2E2_808 0.76 -0.4
940,951 - Pf6N2E2_808 0.76 +0.4
940,951 - Pf6N2E2_808 0.76 -1.2
940,951 - Pf6N2E2_808 0.76 +0.2
940,978 - Pf6N2E2_808 0.79 -0.6
940,978 - Pf6N2E2_808 0.79 -0.3
940,978 - Pf6N2E2_808 0.79 -1.3
940,978 - Pf6N2E2_808 0.79 -1.8
940,978 - Pf6N2E2_808 0.79 -0.4
941,293 + Pf6N2E2_809 0.14 -0.2
941,293 + Pf6N2E2_809 0.14 +0.1
941,294 - Pf6N2E2_809 0.14 -0.8
941,575 - Pf6N2E2_809 0.44 -0.9
941,872 + Pf6N2E2_809 0.76 -0.3
941,873 - Pf6N2E2_809 0.76 -0.6
941,926 + Pf6N2E2_809 0.82 -0.6
941,945 - Pf6N2E2_809 0.84 -0.0
941,945 - Pf6N2E2_809 0.84 -0.4
942,092 + +0.2
942,092 + -0.2
942,092 + +0.4
942,092 + +0.6
942,093 - +0.8
942,106 + -0.1
942,106 + +0.0
942,106 + -1.2
942,106 + +0.3
942,107 - -0.7

Or see this region's nucleotide sequence