Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4962

Experiment: LB no stress 24 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4961 and Pf6N2E2_4962 are separated by 11 nucleotides Pf6N2E2_4961 - Threonine synthase (EC 4.2.3.1), at 5,721,252 to 5,722,616 _4961 Pf6N2E2_4962 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 5,722,628 to 5,723,065 _4962 Position (kb) 5722 5723 5724Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5721.741 kb on + strand, within Pf6N2E2_4961at 5721.742 kb on - strand, within Pf6N2E2_4961at 5721.933 kb on + strand, within Pf6N2E2_4961at 5721.933 kb on + strand, within Pf6N2E2_4961at 5721.934 kb on - strand, within Pf6N2E2_4961at 5721.934 kb on - strand, within Pf6N2E2_4961at 5721.934 kb on - strand, within Pf6N2E2_4961at 5722.014 kb on + strand, within Pf6N2E2_4961at 5722.014 kb on + strand, within Pf6N2E2_4961at 5722.014 kb on + strand, within Pf6N2E2_4961at 5722.015 kb on - strand, within Pf6N2E2_4961at 5722.015 kb on - strand, within Pf6N2E2_4961at 5722.117 kb on - strand, within Pf6N2E2_4961at 5722.203 kb on + strand, within Pf6N2E2_4961at 5722.203 kb on + strand, within Pf6N2E2_4961at 5722.314 kb on + strand, within Pf6N2E2_4961at 5722.315 kb on - strand, within Pf6N2E2_4961at 5722.423 kb on - strand, within Pf6N2E2_4961at 5722.787 kb on + strand, within Pf6N2E2_4962at 5722.987 kb on + strand, within Pf6N2E2_4962at 5722.987 kb on + strand, within Pf6N2E2_4962at 5722.987 kb on + strand, within Pf6N2E2_4962at 5722.988 kb on - strand, within Pf6N2E2_4962at 5722.988 kb on - strand, within Pf6N2E2_4962at 5722.988 kb on - strand, within Pf6N2E2_4962at 5723.178 kb on + strandat 5723.178 kb on + strandat 5723.499 kb on + strandat 5723.499 kb on + strandat 5723.818 kb on + strandat 5723.818 kb on + strandat 5723.989 kb on + strandat 5723.989 kb on + strandat 5723.989 kb on + strandat 5723.989 kb on + strandat 5723.989 kb on + strandat 5723.989 kb on + strandat 5723.989 kb on + strandat 5723.990 kb on - strandat 5723.990 kb on - strandat 5723.990 kb on - strandat 5723.990 kb on - strandat 5724.009 kb on + strandat 5724.009 kb on + strandat 5724.009 kb on + strandat 5724.010 kb on - strandat 5724.010 kb on - strandat 5724.010 kb on - strandat 5724.010 kb on - strandat 5724.010 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress 24 hours
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5,721,741 + Pf6N2E2_4961 0.36 -0.5
5,721,742 - Pf6N2E2_4961 0.36 -0.3
5,721,933 + Pf6N2E2_4961 0.50 -0.6
5,721,933 + Pf6N2E2_4961 0.50 -0.0
5,721,934 - Pf6N2E2_4961 0.50 -1.3
5,721,934 - Pf6N2E2_4961 0.50 +1.0
5,721,934 - Pf6N2E2_4961 0.50 +0.6
5,722,014 + Pf6N2E2_4961 0.56 -0.2
5,722,014 + Pf6N2E2_4961 0.56 +0.4
5,722,014 + Pf6N2E2_4961 0.56 -0.3
5,722,015 - Pf6N2E2_4961 0.56 +1.3
5,722,015 - Pf6N2E2_4961 0.56 +3.0
5,722,117 - Pf6N2E2_4961 0.63 +0.5
5,722,203 + Pf6N2E2_4961 0.70 +0.4
5,722,203 + Pf6N2E2_4961 0.70 +0.0
5,722,314 + Pf6N2E2_4961 0.78 -0.0
5,722,315 - Pf6N2E2_4961 0.78 -0.4
5,722,423 - Pf6N2E2_4961 0.86 +0.1
5,722,787 + Pf6N2E2_4962 0.36 -2.0
5,722,987 + Pf6N2E2_4962 0.82 -1.8
5,722,987 + Pf6N2E2_4962 0.82 -0.9
5,722,987 + Pf6N2E2_4962 0.82 +0.4
5,722,988 - Pf6N2E2_4962 0.82 -0.3
5,722,988 - Pf6N2E2_4962 0.82 -0.8
5,722,988 - Pf6N2E2_4962 0.82 +0.9
5,723,178 + +0.1
5,723,178 + +0.4
5,723,499 + +0.0
5,723,499 + +0.4
5,723,818 + +0.4
5,723,818 + +0.2
5,723,989 + +0.1
5,723,989 + +0.8
5,723,989 + -0.8
5,723,989 + +0.2
5,723,989 + -0.1
5,723,989 + +0.1
5,723,989 + +0.2
5,723,990 - +0.9
5,723,990 - -0.1
5,723,990 - -0.1
5,723,990 - +0.7
5,724,009 + -0.0
5,724,009 + -0.2
5,724,009 + +0.5
5,724,010 - +1.1
5,724,010 - -0.6
5,724,010 - +0.6
5,724,010 - +0.3
5,724,010 - -0.5

Or see this region's nucleotide sequence