Experiment: LB no stress 24 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_961 and Pf6N2E2_962 overlap by 4 nucleotides Pf6N2E2_962 and Pf6N2E2_963 are separated by 14 nucleotides Pf6N2E2_963 and Pf6N2E2_964 are separated by 72 nucleotides Pf6N2E2_964 and Pf6N2E2_965 overlap by 4 nucleotides
Pf6N2E2_961 - FIG00954712: hypothetical protein, at 1,132,961 to 1,133,476
_961
Pf6N2E2_962 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 1,133,473 to 1,133,988
_962
Pf6N2E2_963 - probable exported protein STY4558, at 1,134,003 to 1,134,659
_963
Pf6N2E2_964 - Methyl-accepting chemotaxis protein, at 1,134,732 to 1,135,403
_964
Pf6N2E2_965 - PilL protein, at 1,135,400 to 1,135,942
_965
Position (kb)
1134
1135 Strain fitness (log2 ratio)
-1
0
1 at 1133.189 kb on + strand, within Pf6N2E2_961 at 1133.207 kb on + strand, within Pf6N2E2_961 at 1133.345 kb on + strand, within Pf6N2E2_961 at 1133.458 kb on + strand at 1133.459 kb on - strand at 1133.465 kb on + strand at 1133.812 kb on + strand, within Pf6N2E2_962 at 1133.812 kb on + strand, within Pf6N2E2_962 at 1133.932 kb on + strand, within Pf6N2E2_962 at 1134.010 kb on - strand at 1134.196 kb on + strand, within Pf6N2E2_963 at 1134.197 kb on - strand, within Pf6N2E2_963 at 1134.212 kb on + strand, within Pf6N2E2_963 at 1134.213 kb on - strand, within Pf6N2E2_963 at 1134.291 kb on + strand, within Pf6N2E2_963 at 1134.374 kb on - strand, within Pf6N2E2_963 at 1134.423 kb on + strand, within Pf6N2E2_963 at 1134.587 kb on + strand, within Pf6N2E2_963 at 1134.587 kb on + strand, within Pf6N2E2_963 at 1134.674 kb on + strand at 1134.675 kb on - strand at 1134.675 kb on - strand at 1134.866 kb on + strand, within Pf6N2E2_964 at 1134.867 kb on - strand, within Pf6N2E2_964 at 1134.879 kb on + strand, within Pf6N2E2_964 at 1134.880 kb on - strand, within Pf6N2E2_964 at 1134.880 kb on - strand, within Pf6N2E2_964 at 1135.063 kb on - strand, within Pf6N2E2_964 at 1135.073 kb on + strand, within Pf6N2E2_964 at 1135.119 kb on + strand, within Pf6N2E2_964 at 1135.120 kb on - strand, within Pf6N2E2_964 at 1135.276 kb on - strand, within Pf6N2E2_964 at 1135.328 kb on - strand, within Pf6N2E2_964 at 1135.328 kb on - strand, within Pf6N2E2_964 at 1135.604 kb on + strand, within Pf6N2E2_965 at 1135.659 kb on + strand, within Pf6N2E2_965 at 1135.659 kb on + strand, within Pf6N2E2_965 at 1135.659 kb on + strand, within Pf6N2E2_965
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress 24 hours remove 1,133,189 + Pf6N2E2_961 0.44 +0.3 1,133,207 + Pf6N2E2_961 0.48 +0.2 1,133,345 + Pf6N2E2_961 0.74 +0.0 1,133,458 + +0.1 1,133,459 - -0.6 1,133,465 + +0.5 1,133,812 + Pf6N2E2_962 0.66 +0.0 1,133,812 + Pf6N2E2_962 0.66 +0.7 1,133,932 + Pf6N2E2_962 0.89 -0.1 1,134,010 - +0.1 1,134,196 + Pf6N2E2_963 0.29 +0.5 1,134,197 - Pf6N2E2_963 0.30 +0.4 1,134,212 + Pf6N2E2_963 0.32 +1.1 1,134,213 - Pf6N2E2_963 0.32 +0.4 1,134,291 + Pf6N2E2_963 0.44 -0.6 1,134,374 - Pf6N2E2_963 0.56 +1.2 1,134,423 + Pf6N2E2_963 0.64 -0.4 1,134,587 + Pf6N2E2_963 0.89 +0.2 1,134,587 + Pf6N2E2_963 0.89 -1.3 1,134,674 + -0.2 1,134,675 - +0.1 1,134,675 - -0.3 1,134,866 + Pf6N2E2_964 0.20 +0.1 1,134,867 - Pf6N2E2_964 0.20 -0.6 1,134,879 + Pf6N2E2_964 0.22 -0.1 1,134,880 - Pf6N2E2_964 0.22 +0.3 1,134,880 - Pf6N2E2_964 0.22 -1.3 1,135,063 - Pf6N2E2_964 0.49 +0.7 1,135,073 + Pf6N2E2_964 0.51 -0.2 1,135,119 + Pf6N2E2_964 0.58 +0.3 1,135,120 - Pf6N2E2_964 0.58 +0.6 1,135,276 - Pf6N2E2_964 0.81 +1.1 1,135,328 - Pf6N2E2_964 0.89 -0.5 1,135,328 - Pf6N2E2_964 0.89 +0.2 1,135,604 + Pf6N2E2_965 0.38 -0.7 1,135,659 + Pf6N2E2_965 0.48 +0.7 1,135,659 + Pf6N2E2_965 0.48 +0.4 1,135,659 + Pf6N2E2_965 0.48 -0.1
Or see this region's nucleotide sequence