Experiment: LB no stress 24 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3168 and Pf6N2E2_3169 are separated by 3 nucleotides Pf6N2E2_3169 and Pf6N2E2_3170 are separated by 459 nucleotides
Pf6N2E2_3168 - Exodeoxyribonuclease VII large subunit (EC 3.1.11.6), at 3,662,480 to 3,663,868
_3168
Pf6N2E2_3169 - Membrane proteins related to metalloendopeptidases, at 3,663,872 to 3,664,693
_3169
Pf6N2E2_3170 - 2-isopropylmalate synthase (EC 2.3.3.13), at 3,665,153 to 3,666,832
_3170
Position (kb)
3663
3664
3665 Strain fitness (log2 ratio)
-1
0
1 at 3663.256 kb on - strand, within Pf6N2E2_3168 at 3663.503 kb on - strand, within Pf6N2E2_3168 at 3663.576 kb on + strand, within Pf6N2E2_3168 at 3663.714 kb on - strand, within Pf6N2E2_3168 at 3663.817 kb on - strand at 3663.859 kb on - strand at 3663.891 kb on + strand at 3663.892 kb on - strand at 3663.935 kb on + strand at 3663.935 kb on + strand at 3663.935 kb on + strand at 3663.935 kb on + strand at 3663.935 kb on + strand at 3663.936 kb on - strand at 3663.936 kb on - strand at 3663.936 kb on - strand at 3663.936 kb on - strand at 3663.936 kb on - strand at 3664.022 kb on + strand, within Pf6N2E2_3169 at 3664.163 kb on + strand, within Pf6N2E2_3169 at 3664.164 kb on - strand, within Pf6N2E2_3169 at 3664.460 kb on - strand, within Pf6N2E2_3169 at 3664.460 kb on - strand, within Pf6N2E2_3169 at 3664.463 kb on + strand, within Pf6N2E2_3169 at 3664.463 kb on + strand, within Pf6N2E2_3169 at 3664.463 kb on + strand, within Pf6N2E2_3169 at 3664.463 kb on + strand, within Pf6N2E2_3169 at 3664.463 kb on + strand, within Pf6N2E2_3169 at 3664.464 kb on - strand, within Pf6N2E2_3169 at 3664.464 kb on - strand, within Pf6N2E2_3169 at 3664.464 kb on - strand, within Pf6N2E2_3169 at 3664.464 kb on - strand, within Pf6N2E2_3169 at 3664.464 kb on - strand, within Pf6N2E2_3169 at 3664.748 kb on - strand at 3664.776 kb on - strand at 3665.184 kb on - strand at 3665.495 kb on - strand, within Pf6N2E2_3170 at 3665.540 kb on + strand, within Pf6N2E2_3170 at 3665.540 kb on + strand, within Pf6N2E2_3170 at 3665.541 kb on - strand, within Pf6N2E2_3170 at 3665.639 kb on + strand, within Pf6N2E2_3170 at 3665.639 kb on + strand, within Pf6N2E2_3170 at 3665.640 kb on - strand, within Pf6N2E2_3170 at 3665.678 kb on + strand, within Pf6N2E2_3170
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress 24 hours remove 3,663,256 - Pf6N2E2_3168 0.56 +0.2 3,663,503 - Pf6N2E2_3168 0.74 -1.2 3,663,576 + Pf6N2E2_3168 0.79 +1.2 3,663,714 - Pf6N2E2_3168 0.89 +0.2 3,663,817 - -0.4 3,663,859 - -1.0 3,663,891 + -1.2 3,663,892 - -0.2 3,663,935 + -0.4 3,663,935 + -0.6 3,663,935 + +0.3 3,663,935 + +0.1 3,663,935 + -0.3 3,663,936 - +0.2 3,663,936 - +0.1 3,663,936 - +0.0 3,663,936 - -0.6 3,663,936 - -0.2 3,664,022 + Pf6N2E2_3169 0.18 -1.0 3,664,163 + Pf6N2E2_3169 0.35 +1.1 3,664,164 - Pf6N2E2_3169 0.36 +1.1 3,664,460 - Pf6N2E2_3169 0.72 -0.2 3,664,460 - Pf6N2E2_3169 0.72 +0.5 3,664,463 + Pf6N2E2_3169 0.72 -0.1 3,664,463 + Pf6N2E2_3169 0.72 +0.5 3,664,463 + Pf6N2E2_3169 0.72 -0.4 3,664,463 + Pf6N2E2_3169 0.72 -0.8 3,664,463 + Pf6N2E2_3169 0.72 +0.9 3,664,464 - Pf6N2E2_3169 0.72 +0.6 3,664,464 - Pf6N2E2_3169 0.72 +1.1 3,664,464 - Pf6N2E2_3169 0.72 +0.3 3,664,464 - Pf6N2E2_3169 0.72 +0.2 3,664,464 - Pf6N2E2_3169 0.72 +0.8 3,664,748 - -0.0 3,664,776 - +0.6 3,665,184 - +0.5 3,665,495 - Pf6N2E2_3170 0.20 +0.1 3,665,540 + Pf6N2E2_3170 0.23 +0.8 3,665,540 + Pf6N2E2_3170 0.23 +0.3 3,665,541 - Pf6N2E2_3170 0.23 +0.1 3,665,639 + Pf6N2E2_3170 0.29 -0.2 3,665,639 + Pf6N2E2_3170 0.29 +0.2 3,665,640 - Pf6N2E2_3170 0.29 -1.0 3,665,678 + Pf6N2E2_3170 0.31 -0.1
Or see this region's nucleotide sequence