Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1583

Experiment: LB no stress 24 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1582 and Pf6N2E2_1583 overlap by 23 nucleotidesPf6N2E2_1583 and Pf6N2E2_1584 are separated by 117 nucleotides Pf6N2E2_1582 - HlyD family secretion protein, at 1,851,379 to 1,852,695 _1582 Pf6N2E2_1583 - ABC-type protease/lipase transport system, ATPase and permease components, at 1,852,673 to 1,854,457 _1583 Pf6N2E2_1584 - Transcriptional regulator, MarR family / Acetyltransferase (GNAT), at 1,854,575 to 1,855,486 _1584 Position (kb) 1852 1853 1854 1855Strain fitness (log2 ratio) -1 0 1 2at 1851.835 kb on - strand, within Pf6N2E2_1582at 1851.881 kb on + strand, within Pf6N2E2_1582at 1851.881 kb on + strand, within Pf6N2E2_1582at 1852.118 kb on + strand, within Pf6N2E2_1582at 1853.013 kb on + strand, within Pf6N2E2_1583at 1853.013 kb on + strand, within Pf6N2E2_1583at 1853.092 kb on - strand, within Pf6N2E2_1583at 1853.547 kb on + strand, within Pf6N2E2_1583at 1853.547 kb on + strand, within Pf6N2E2_1583at 1853.566 kb on + strand, within Pf6N2E2_1583at 1853.676 kb on + strand, within Pf6N2E2_1583at 1853.723 kb on - strand, within Pf6N2E2_1583at 1853.875 kb on - strand, within Pf6N2E2_1583at 1854.024 kb on + strand, within Pf6N2E2_1583at 1854.024 kb on + strand, within Pf6N2E2_1583at 1854.025 kb on - strand, within Pf6N2E2_1583at 1854.163 kb on + strand, within Pf6N2E2_1583at 1854.163 kb on + strand, within Pf6N2E2_1583at 1854.163 kb on + strand, within Pf6N2E2_1583at 1854.165 kb on + strand, within Pf6N2E2_1583at 1854.166 kb on - strand, within Pf6N2E2_1583at 1854.245 kb on + strand, within Pf6N2E2_1583at 1854.295 kb on + strandat 1854.339 kb on + strandat 1854.340 kb on - strandat 1854.351 kb on - strandat 1854.495 kb on - strandat 1854.519 kb on - strandat 1854.776 kb on + strand, within Pf6N2E2_1584at 1854.882 kb on - strand, within Pf6N2E2_1584at 1855.006 kb on - strand, within Pf6N2E2_1584at 1855.129 kb on - strand, within Pf6N2E2_1584at 1855.172 kb on + strand, within Pf6N2E2_1584at 1855.173 kb on - strand, within Pf6N2E2_1584at 1855.412 kb on + strandat 1855.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress 24 hours
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1,851,835 - Pf6N2E2_1582 0.35 +0.5
1,851,881 + Pf6N2E2_1582 0.38 -0.2
1,851,881 + Pf6N2E2_1582 0.38 -0.0
1,852,118 + Pf6N2E2_1582 0.56 -0.5
1,853,013 + Pf6N2E2_1583 0.19 +0.7
1,853,013 + Pf6N2E2_1583 0.19 +0.6
1,853,092 - Pf6N2E2_1583 0.23 +1.8
1,853,547 + Pf6N2E2_1583 0.49 +1.7
1,853,547 + Pf6N2E2_1583 0.49 +0.9
1,853,566 + Pf6N2E2_1583 0.50 +0.5
1,853,676 + Pf6N2E2_1583 0.56 +0.1
1,853,723 - Pf6N2E2_1583 0.59 +1.3
1,853,875 - Pf6N2E2_1583 0.67 +0.8
1,854,024 + Pf6N2E2_1583 0.76 +0.8
1,854,024 + Pf6N2E2_1583 0.76 -0.1
1,854,025 - Pf6N2E2_1583 0.76 -1.2
1,854,163 + Pf6N2E2_1583 0.83 -0.1
1,854,163 + Pf6N2E2_1583 0.83 +0.1
1,854,163 + Pf6N2E2_1583 0.83 +0.9
1,854,165 + Pf6N2E2_1583 0.84 -0.7
1,854,166 - Pf6N2E2_1583 0.84 +0.3
1,854,245 + Pf6N2E2_1583 0.88 +0.2
1,854,295 + +0.4
1,854,339 + -1.7
1,854,340 - +1.7
1,854,351 - +0.8
1,854,495 - +0.4
1,854,519 - +0.6
1,854,776 + Pf6N2E2_1584 0.22 +0.2
1,854,882 - Pf6N2E2_1584 0.34 -0.5
1,855,006 - Pf6N2E2_1584 0.47 +0.7
1,855,129 - Pf6N2E2_1584 0.61 +0.5
1,855,172 + Pf6N2E2_1584 0.65 +0.5
1,855,173 - Pf6N2E2_1584 0.66 +0.5
1,855,412 + -0.3
1,855,413 - -0.7

Or see this region's nucleotide sequence