Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5111

Experiment: perchlorate 0.00625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5109 and Pf6N2E2_5110 overlap by 8 nucleotidesPf6N2E2_5110 and Pf6N2E2_5111 overlap by 8 nucleotidesPf6N2E2_5111 and Pf6N2E2_5112 are separated by 108 nucleotides Pf6N2E2_5109 - Isoleucyl-tRNA synthetase (EC 6.1.1.5), at 5,892,023 to 5,894,854 _5109 Pf6N2E2_5110 - Lipoprotein signal peptidase (EC 3.4.23.36), at 5,894,847 to 5,895,359 _5110 Pf6N2E2_5111 - FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8), at 5,895,352 to 5,895,789 _5111 Pf6N2E2_5112 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2), at 5,895,898 to 5,896,845 _5112 Position (kb) 5895 5896Strain fitness (log2 ratio) -1 0 1at 5895.406 kb on + strand, within Pf6N2E2_5111at 5895.406 kb on + strand, within Pf6N2E2_5111at 5895.406 kb on + strand, within Pf6N2E2_5111

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 0.00625 M
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5,895,406 + Pf6N2E2_5111 0.12 -1.7
5,895,406 + Pf6N2E2_5111 0.12 -0.5
5,895,406 + Pf6N2E2_5111 0.12 -0.2

Or see this region's nucleotide sequence