Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_433

Experiment: perchlorate 0.00625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_431 and Pf6N2E2_432 are separated by 1 nucleotidesPf6N2E2_432 and Pf6N2E2_433 are separated by 128 nucleotidesPf6N2E2_433 and Pf6N2E2_434 overlap by 4 nucleotidesPf6N2E2_434 and Pf6N2E2_435 are separated by 15 nucleotidesPf6N2E2_435 and Pf6N2E2_436 overlap by 37 nucleotides Pf6N2E2_431 - Molybdenum transport system permease protein ModB (TC 3.A.1.8.1), at 498,774 to 499,454 _431 Pf6N2E2_432 - Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1), at 499,456 to 500,208 _432 Pf6N2E2_433 - Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), at 500,337 to 501,410 _433 Pf6N2E2_434 - hypothetical protein, at 501,407 to 501,544 _434 Pf6N2E2_435 - Probable transcription regulator, at 501,560 to 502,048 _435 Pf6N2E2_436 - ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 502,012 to 503,085 _436 Position (kb) 500 501 502Strain fitness (log2 ratio) -2 -1 0 1at 499.353 kb on + strand, within Pf6N2E2_431at 499.354 kb on - strand, within Pf6N2E2_431at 499.432 kb on + strandat 499.433 kb on - strandat 499.457 kb on + strandat 499.511 kb on + strandat 499.511 kb on + strandat 499.512 kb on - strandat 499.640 kb on + strand, within Pf6N2E2_432at 499.640 kb on + strand, within Pf6N2E2_432at 499.640 kb on + strand, within Pf6N2E2_432at 499.868 kb on + strand, within Pf6N2E2_432at 499.868 kb on + strand, within Pf6N2E2_432at 499.868 kb on + strand, within Pf6N2E2_432at 499.868 kb on + strand, within Pf6N2E2_432at 499.868 kb on + strand, within Pf6N2E2_432at 499.869 kb on - strand, within Pf6N2E2_432at 499.869 kb on - strand, within Pf6N2E2_432at 499.911 kb on - strand, within Pf6N2E2_432at 499.911 kb on - strand, within Pf6N2E2_432at 500.021 kb on + strand, within Pf6N2E2_432at 500.021 kb on + strand, within Pf6N2E2_432at 500.021 kb on + strand, within Pf6N2E2_432at 500.058 kb on + strand, within Pf6N2E2_432at 500.058 kb on + strand, within Pf6N2E2_432at 500.160 kb on + strandat 500.160 kb on + strandat 500.160 kb on + strandat 500.161 kb on - strandat 500.208 kb on + strandat 500.208 kb on + strandat 500.208 kb on + strandat 500.208 kb on + strandat 500.208 kb on + strandat 500.208 kb on + strandat 500.209 kb on - strandat 500.209 kb on - strandat 500.209 kb on - strandat 500.209 kb on - strandat 500.235 kb on + strandat 500.235 kb on + strandat 500.237 kb on + strandat 500.238 kb on - strandat 500.238 kb on - strandat 500.240 kb on - strandat 500.247 kb on + strandat 500.248 kb on - strandat 500.249 kb on + strandat 500.249 kb on + strandat 500.250 kb on - strandat 500.250 kb on - strandat 500.250 kb on - strandat 500.251 kb on + strandat 500.251 kb on + strandat 500.252 kb on - strandat 500.677 kb on + strand, within Pf6N2E2_433at 500.870 kb on - strand, within Pf6N2E2_433at 501.122 kb on - strand, within Pf6N2E2_433at 501.122 kb on - strand, within Pf6N2E2_433at 501.122 kb on - strand, within Pf6N2E2_433at 501.122 kb on - strand, within Pf6N2E2_433at 501.448 kb on + strand, within Pf6N2E2_434at 501.448 kb on + strand, within Pf6N2E2_434at 501.525 kb on - strand, within Pf6N2E2_434at 501.540 kb on + strandat 501.541 kb on - strandat 501.541 kb on - strandat 501.743 kb on + strand, within Pf6N2E2_435at 501.744 kb on - strand, within Pf6N2E2_435at 501.744 kb on - strand, within Pf6N2E2_435at 501.744 kb on - strand, within Pf6N2E2_435at 501.753 kb on - strand, within Pf6N2E2_435at 501.851 kb on + strand, within Pf6N2E2_435at 501.851 kb on + strand, within Pf6N2E2_435at 501.920 kb on + strand, within Pf6N2E2_435at 501.921 kb on - strand, within Pf6N2E2_435at 501.975 kb on - strand, within Pf6N2E2_435at 502.001 kb on + strandat 502.001 kb on + strandat 502.002 kb on - strandat 502.002 kb on - strandat 502.002 kb on - strandat 502.099 kb on + strandat 502.100 kb on - strandat 502.206 kb on - strand, within Pf6N2E2_436at 502.300 kb on + strand, within Pf6N2E2_436at 502.301 kb on - strand, within Pf6N2E2_436at 502.301 kb on - strand, within Pf6N2E2_436

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 0.00625 M
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499,353 + Pf6N2E2_431 0.85 +0.5
499,354 - Pf6N2E2_431 0.85 +0.6
499,432 + +0.0
499,433 - +0.4
499,457 + -0.5
499,511 + +0.2
499,511 + -0.2
499,512 - +0.1
499,640 + Pf6N2E2_432 0.24 -0.7
499,640 + Pf6N2E2_432 0.24 +0.1
499,640 + Pf6N2E2_432 0.24 -0.1
499,868 + Pf6N2E2_432 0.55 -0.8
499,868 + Pf6N2E2_432 0.55 -1.8
499,868 + Pf6N2E2_432 0.55 +0.3
499,868 + Pf6N2E2_432 0.55 -0.9
499,868 + Pf6N2E2_432 0.55 +1.5
499,869 - Pf6N2E2_432 0.55 -0.3
499,869 - Pf6N2E2_432 0.55 +0.9
499,911 - Pf6N2E2_432 0.60 -0.2
499,911 - Pf6N2E2_432 0.60 -1.2
500,021 + Pf6N2E2_432 0.75 +0.5
500,021 + Pf6N2E2_432 0.75 -0.2
500,021 + Pf6N2E2_432 0.75 +0.3
500,058 + Pf6N2E2_432 0.80 -0.3
500,058 + Pf6N2E2_432 0.80 +0.1
500,160 + -0.0
500,160 + -0.1
500,160 + -0.5
500,161 - +0.2
500,208 + -0.2
500,208 + -0.7
500,208 + +0.2
500,208 + +0.9
500,208 + -1.0
500,208 + -0.1
500,209 - +0.1
500,209 - -0.3
500,209 - -0.5
500,209 - -0.5
500,235 + -0.5
500,235 + -0.7
500,237 + -1.0
500,238 - -0.5
500,238 - +0.3
500,240 - -1.6
500,247 + +0.1
500,248 - +0.8
500,249 + -0.0
500,249 + -0.7
500,250 - -0.4
500,250 - +1.3
500,250 - +0.6
500,251 + -0.4
500,251 + +0.7
500,252 - +0.3
500,677 + Pf6N2E2_433 0.32 -1.5
500,870 - Pf6N2E2_433 0.50 -0.5
501,122 - Pf6N2E2_433 0.73 -1.3
501,122 - Pf6N2E2_433 0.73 +0.2
501,122 - Pf6N2E2_433 0.73 -0.2
501,122 - Pf6N2E2_433 0.73 -0.9
501,448 + Pf6N2E2_434 0.30 +0.3
501,448 + Pf6N2E2_434 0.30 +0.1
501,525 - Pf6N2E2_434 0.86 +1.5
501,540 + -1.1
501,541 - +0.4
501,541 - +0.7
501,743 + Pf6N2E2_435 0.37 -0.4
501,744 - Pf6N2E2_435 0.38 +0.0
501,744 - Pf6N2E2_435 0.38 -0.2
501,744 - Pf6N2E2_435 0.38 -0.1
501,753 - Pf6N2E2_435 0.39 +0.2
501,851 + Pf6N2E2_435 0.60 +0.7
501,851 + Pf6N2E2_435 0.60 -0.8
501,920 + Pf6N2E2_435 0.74 +0.2
501,921 - Pf6N2E2_435 0.74 -0.3
501,975 - Pf6N2E2_435 0.85 -0.2
502,001 + +1.3
502,001 + -0.4
502,002 - +0.1
502,002 - -1.0
502,002 - -0.6
502,099 + -0.3
502,100 - +0.8
502,206 - Pf6N2E2_436 0.18 +0.7
502,300 + Pf6N2E2_436 0.27 +0.6
502,301 - Pf6N2E2_436 0.27 +0.0
502,301 - Pf6N2E2_436 0.27 -0.3

Or see this region's nucleotide sequence