Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_39

Experiment: perchlorate 0.00625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_38 and Pf6N2E2_39 are separated by 143 nucleotidesPf6N2E2_39 and Pf6N2E2_40 overlap by 1 nucleotidesPf6N2E2_40 and Pf6N2E2_41 overlap by 1 nucleotidesPf6N2E2_41 and Pf6N2E2_42 overlap by 4 nucleotides Pf6N2E2_38 - FIG00954456: hypothetical protein, at 77,278 to 78,357 _38 Pf6N2E2_39 - FIG00857858: hypothetical protein, at 78,501 to 78,809 _39 Pf6N2E2_40 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 78,809 to 79,120 _40 Pf6N2E2_41 - Two-component system response regulator QseB, at 79,120 to 79,788 _41 Pf6N2E2_42 - Sensor protein PhoQ (EC 2.7.13.3), at 79,785 to 81,098 _42 Position (kb) 78 79Strain fitness (log2 ratio) -2 -1 0 1at 77.597 kb on + strand, within Pf6N2E2_38at 77.598 kb on - strand, within Pf6N2E2_38at 77.616 kb on - strand, within Pf6N2E2_38at 77.639 kb on + strand, within Pf6N2E2_38at 78.065 kb on + strand, within Pf6N2E2_38at 78.065 kb on + strand, within Pf6N2E2_38at 78.065 kb on + strand, within Pf6N2E2_38at 78.065 kb on + strand, within Pf6N2E2_38at 78.065 kb on + strand, within Pf6N2E2_38at 78.065 kb on + strand, within Pf6N2E2_38at 78.065 kb on + strand, within Pf6N2E2_38at 78.066 kb on - strand, within Pf6N2E2_38at 78.066 kb on - strand, within Pf6N2E2_38at 78.066 kb on - strand, within Pf6N2E2_38at 78.388 kb on + strandat 78.389 kb on - strandat 78.389 kb on - strandat 78.389 kb on - strandat 78.390 kb on + strandat 78.391 kb on - strandat 78.409 kb on + strandat 78.410 kb on - strandat 78.410 kb on - strandat 78.410 kb on - strandat 78.410 kb on - strandat 78.482 kb on + strandat 78.483 kb on - strandat 78.483 kb on - strandat 78.484 kb on + strandat 78.484 kb on + strandat 78.484 kb on + strandat 78.485 kb on - strandat 78.485 kb on - strandat 78.485 kb on - strandat 78.485 kb on - strandat 78.485 kb on - strandat 78.485 kb on - strandat 78.485 kb on - strandat 78.495 kb on + strandat 78.611 kb on + strand, within Pf6N2E2_39at 78.708 kb on + strand, within Pf6N2E2_39at 78.708 kb on + strand, within Pf6N2E2_39at 78.709 kb on - strand, within Pf6N2E2_39at 78.709 kb on - strand, within Pf6N2E2_39at 78.714 kb on + strand, within Pf6N2E2_39at 78.714 kb on + strand, within Pf6N2E2_39at 78.715 kb on - strand, within Pf6N2E2_39at 78.715 kb on - strand, within Pf6N2E2_39at 78.735 kb on - strand, within Pf6N2E2_39at 78.804 kb on - strandat 78.807 kb on + strandat 78.808 kb on - strandat 78.808 kb on - strandat 78.833 kb on - strandat 79.023 kb on - strand, within Pf6N2E2_40at 79.023 kb on - strand, within Pf6N2E2_40at 79.023 kb on - strand, within Pf6N2E2_40at 79.025 kb on - strand, within Pf6N2E2_40at 79.025 kb on - strand, within Pf6N2E2_40at 79.025 kb on - strand, within Pf6N2E2_40at 79.029 kb on - strand, within Pf6N2E2_40at 79.099 kb on - strandat 79.108 kb on + strandat 79.109 kb on - strandat 79.230 kb on - strand, within Pf6N2E2_41at 79.232 kb on - strand, within Pf6N2E2_41at 79.252 kb on + strand, within Pf6N2E2_41at 79.253 kb on - strand, within Pf6N2E2_41at 79.411 kb on + strand, within Pf6N2E2_41at 79.600 kb on + strand, within Pf6N2E2_41at 79.600 kb on + strand, within Pf6N2E2_41at 79.601 kb on - strand, within Pf6N2E2_41at 79.601 kb on - strand, within Pf6N2E2_41at 79.632 kb on + strand, within Pf6N2E2_41at 79.633 kb on - strand, within Pf6N2E2_41at 79.658 kb on - strand, within Pf6N2E2_41at 79.658 kb on - strand, within Pf6N2E2_41

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 0.00625 M
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77,597 + Pf6N2E2_38 0.30 +0.6
77,598 - Pf6N2E2_38 0.30 -1.1
77,616 - Pf6N2E2_38 0.31 +0.9
77,639 + Pf6N2E2_38 0.33 +0.7
78,065 + Pf6N2E2_38 0.73 -0.4
78,065 + Pf6N2E2_38 0.73 +0.2
78,065 + Pf6N2E2_38 0.73 +0.1
78,065 + Pf6N2E2_38 0.73 +0.3
78,065 + Pf6N2E2_38 0.73 -0.1
78,065 + Pf6N2E2_38 0.73 +0.3
78,065 + Pf6N2E2_38 0.73 +1.2
78,066 - Pf6N2E2_38 0.73 +1.2
78,066 - Pf6N2E2_38 0.73 -0.2
78,066 - Pf6N2E2_38 0.73 -0.2
78,388 + -0.4
78,389 - +0.3
78,389 - -1.5
78,389 - +1.1
78,390 + -0.9
78,391 - -0.1
78,409 + +0.5
78,410 - -0.6
78,410 - +0.9
78,410 - -1.0
78,410 - -1.1
78,482 + +0.4
78,483 - +1.3
78,483 - +0.0
78,484 + +0.2
78,484 + -0.0
78,484 + +1.3
78,485 - -1.6
78,485 - -2.3
78,485 - -0.6
78,485 - -1.4
78,485 - -0.7
78,485 - -0.3
78,485 - +0.9
78,495 + +0.5
78,611 + Pf6N2E2_39 0.36 -0.2
78,708 + Pf6N2E2_39 0.67 -0.6
78,708 + Pf6N2E2_39 0.67 -0.4
78,709 - Pf6N2E2_39 0.67 -0.9
78,709 - Pf6N2E2_39 0.67 -0.9
78,714 + Pf6N2E2_39 0.69 -1.9
78,714 + Pf6N2E2_39 0.69 -0.4
78,715 - Pf6N2E2_39 0.69 -1.0
78,715 - Pf6N2E2_39 0.69 -0.2
78,735 - Pf6N2E2_39 0.76 -0.1
78,804 - +0.0
78,807 + -0.9
78,808 - +0.8
78,808 - -1.0
78,833 - -0.5
79,023 - Pf6N2E2_40 0.69 -0.2
79,023 - Pf6N2E2_40 0.69 -1.6
79,023 - Pf6N2E2_40 0.69 -0.5
79,025 - Pf6N2E2_40 0.69 +0.2
79,025 - Pf6N2E2_40 0.69 +0.4
79,025 - Pf6N2E2_40 0.69 -0.3
79,029 - Pf6N2E2_40 0.71 -0.6
79,099 - +0.8
79,108 + +0.5
79,109 - -0.5
79,230 - Pf6N2E2_41 0.16 +0.8
79,232 - Pf6N2E2_41 0.17 +0.1
79,252 + Pf6N2E2_41 0.20 +0.7
79,253 - Pf6N2E2_41 0.20 +0.0
79,411 + Pf6N2E2_41 0.43 +0.3
79,600 + Pf6N2E2_41 0.72 -0.8
79,600 + Pf6N2E2_41 0.72 +0.1
79,601 - Pf6N2E2_41 0.72 -0.2
79,601 - Pf6N2E2_41 0.72 +0.3
79,632 + Pf6N2E2_41 0.77 -0.8
79,633 - Pf6N2E2_41 0.77 +0.4
79,658 - Pf6N2E2_41 0.80 +0.9
79,658 - Pf6N2E2_41 0.80 +0.5

Or see this region's nucleotide sequence