Experiment: perchlorate 0.00625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1127 and Pf6N2E2_1128 overlap by 10 nucleotides Pf6N2E2_1128 and Pf6N2E2_1129 overlap by 4 nucleotides
Pf6N2E2_1127 - Sensory box histidine kinase/response regulator, at 1,322,314 to 1,324,632
_1127
Pf6N2E2_1128 - Two-component response regulator, at 1,324,623 to 1,325,291
_1128
Pf6N2E2_1129 - Sensor histidine kinase, at 1,325,288 to 1,326,472
_1129
Position (kb)
1324
1325
1326 Strain fitness (log2 ratio)
-2
-1
0
1 at 1323.671 kb on + strand, within Pf6N2E2_1127 at 1323.672 kb on - strand, within Pf6N2E2_1127 at 1323.672 kb on - strand, within Pf6N2E2_1127 at 1323.714 kb on - strand, within Pf6N2E2_1127 at 1323.756 kb on - strand, within Pf6N2E2_1127 at 1323.899 kb on - strand, within Pf6N2E2_1127 at 1324.362 kb on - strand, within Pf6N2E2_1127 at 1324.362 kb on - strand, within Pf6N2E2_1127 at 1324.362 kb on - strand, within Pf6N2E2_1127 at 1324.397 kb on + strand, within Pf6N2E2_1127 at 1324.405 kb on + strand at 1324.405 kb on + strand at 1324.405 kb on + strand at 1324.406 kb on - strand at 1324.435 kb on - strand at 1324.516 kb on - strand at 1324.517 kb on + strand at 1324.517 kb on + strand at 1324.517 kb on + strand at 1324.518 kb on - strand at 1324.518 kb on - strand at 1324.518 kb on - strand at 1324.518 kb on - strand at 1324.518 kb on - strand at 1324.726 kb on - strand, within Pf6N2E2_1128 at 1324.982 kb on - strand, within Pf6N2E2_1128 at 1325.231 kb on + strand at 1325.688 kb on + strand, within Pf6N2E2_1129 at 1325.688 kb on + strand, within Pf6N2E2_1129 at 1325.708 kb on + strand, within Pf6N2E2_1129 at 1325.890 kb on - strand, within Pf6N2E2_1129 at 1326.101 kb on + strand, within Pf6N2E2_1129 at 1326.101 kb on + strand, within Pf6N2E2_1129 at 1326.102 kb on - strand, within Pf6N2E2_1129 at 1326.102 kb on - strand, within Pf6N2E2_1129 at 1326.102 kb on - strand, within Pf6N2E2_1129 at 1326.102 kb on - strand, within Pf6N2E2_1129
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 0.00625 M remove 1,323,671 + Pf6N2E2_1127 0.59 -0.5 1,323,672 - Pf6N2E2_1127 0.59 -0.0 1,323,672 - Pf6N2E2_1127 0.59 -1.8 1,323,714 - Pf6N2E2_1127 0.60 +0.3 1,323,756 - Pf6N2E2_1127 0.62 +0.5 1,323,899 - Pf6N2E2_1127 0.68 +0.3 1,324,362 - Pf6N2E2_1127 0.88 +1.1 1,324,362 - Pf6N2E2_1127 0.88 +0.5 1,324,362 - Pf6N2E2_1127 0.88 +1.4 1,324,397 + Pf6N2E2_1127 0.90 -1.0 1,324,405 + +1.0 1,324,405 + -0.4 1,324,405 + -0.4 1,324,406 - +0.2 1,324,435 - -0.5 1,324,516 - +0.7 1,324,517 + +0.2 1,324,517 + -0.3 1,324,517 + -0.8 1,324,518 - -0.2 1,324,518 - -0.6 1,324,518 - +0.3 1,324,518 - -0.9 1,324,518 - +0.5 1,324,726 - Pf6N2E2_1128 0.15 -0.8 1,324,982 - Pf6N2E2_1128 0.54 -1.7 1,325,231 + +0.4 1,325,688 + Pf6N2E2_1129 0.34 +1.0 1,325,688 + Pf6N2E2_1129 0.34 +0.1 1,325,708 + Pf6N2E2_1129 0.35 -0.3 1,325,890 - Pf6N2E2_1129 0.51 +0.1 1,326,101 + Pf6N2E2_1129 0.69 +0.2 1,326,101 + Pf6N2E2_1129 0.69 +0.7 1,326,102 - Pf6N2E2_1129 0.69 +0.2 1,326,102 - Pf6N2E2_1129 0.69 -0.2 1,326,102 - Pf6N2E2_1129 0.69 +0.9 1,326,102 - Pf6N2E2_1129 0.69 +0.3
Or see this region's nucleotide sequence