Experiment: perchlorate 0.00625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4337 and Pf6N2E2_4338 are separated by 68 nucleotides Pf6N2E2_4338 and Pf6N2E2_4339 are separated by 15 nucleotides
Pf6N2E2_4337 - Uncharacterized protein ImpI/VasC, at 5,059,719 to 5,061,218
_4337
Pf6N2E2_4338 - Type VI secretion lipoprotein/VasD, at 5,061,287 to 5,061,793
_4338
Pf6N2E2_4339 - Uncharacterized protein ImpJ/VasE, at 5,061,809 to 5,063,143
_4339
Position (kb) 5061
5062 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5060.393 kb on + strand, within Pf6N2E2_4337 at 5060.731 kb on - strand, within Pf6N2E2_4337 at 5061.104 kb on + strand at 5061.105 kb on - strand at 5061.115 kb on - strand at 5061.115 kb on - strand at 5061.115 kb on - strand at 5061.115 kb on - strand at 5061.183 kb on + strand at 5061.260 kb on + strand at 5061.261 kb on - strand at 5061.638 kb on - strand, within Pf6N2E2_4338 at 5061.645 kb on + strand, within Pf6N2E2_4338 at 5061.646 kb on - strand, within Pf6N2E2_4338 at 5061.713 kb on + strand, within Pf6N2E2_4338 at 5061.714 kb on - strand, within Pf6N2E2_4338 at 5061.723 kb on - strand, within Pf6N2E2_4338 at 5062.103 kb on + strand, within Pf6N2E2_4339 at 5062.104 kb on - strand, within Pf6N2E2_4339 at 5062.104 kb on - strand, within Pf6N2E2_4339 at 5062.104 kb on - strand, within Pf6N2E2_4339 at 5062.104 kb on - strand, within Pf6N2E2_4339 at 5062.178 kb on + strand, within Pf6N2E2_4339 at 5062.178 kb on + strand, within Pf6N2E2_4339 at 5062.179 kb on - strand, within Pf6N2E2_4339 at 5062.179 kb on - strand, within Pf6N2E2_4339 at 5062.179 kb on - strand, within Pf6N2E2_4339 at 5062.179 kb on - strand, within Pf6N2E2_4339 at 5062.179 kb on - strand, within Pf6N2E2_4339 at 5062.179 kb on - strand, within Pf6N2E2_4339 at 5062.295 kb on + strand, within Pf6N2E2_4339 at 5062.364 kb on + strand, within Pf6N2E2_4339 at 5062.364 kb on + strand, within Pf6N2E2_4339 at 5062.364 kb on + strand, within Pf6N2E2_4339 at 5062.364 kb on + strand, within Pf6N2E2_4339 at 5062.364 kb on + strand, within Pf6N2E2_4339 at 5062.364 kb on + strand, within Pf6N2E2_4339 at 5062.364 kb on + strand, within Pf6N2E2_4339 at 5062.365 kb on - strand, within Pf6N2E2_4339 at 5062.365 kb on - strand, within Pf6N2E2_4339 at 5062.365 kb on - strand, within Pf6N2E2_4339 at 5062.365 kb on - strand, within Pf6N2E2_4339 at 5062.365 kb on - strand, within Pf6N2E2_4339 at 5062.365 kb on - strand, within Pf6N2E2_4339 at 5062.365 kb on - strand, within Pf6N2E2_4339 at 5062.365 kb on - strand, within Pf6N2E2_4339 at 5062.595 kb on + strand, within Pf6N2E2_4339 at 5062.595 kb on + strand, within Pf6N2E2_4339 at 5062.673 kb on + strand, within Pf6N2E2_4339 at 5062.700 kb on + strand, within Pf6N2E2_4339 at 5062.700 kb on + strand, within Pf6N2E2_4339 at 5062.701 kb on - strand, within Pf6N2E2_4339 at 5062.787 kb on + strand, within Pf6N2E2_4339
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 0.00625 M remove 5,060,393 + Pf6N2E2_4337 0.45 +0.2 5,060,731 - Pf6N2E2_4337 0.67 +0.4 5,061,104 + +0.1 5,061,105 - +0.4 5,061,115 - +0.4 5,061,115 - -0.4 5,061,115 - +0.9 5,061,115 - +0.4 5,061,183 + -0.8 5,061,260 + -1.6 5,061,261 - -0.6 5,061,638 - Pf6N2E2_4338 0.69 +0.5 5,061,645 + Pf6N2E2_4338 0.71 -0.6 5,061,646 - Pf6N2E2_4338 0.71 -0.9 5,061,713 + Pf6N2E2_4338 0.84 -0.2 5,061,714 - Pf6N2E2_4338 0.84 -1.3 5,061,723 - Pf6N2E2_4338 0.86 -0.2 5,062,103 + Pf6N2E2_4339 0.22 +2.2 5,062,104 - Pf6N2E2_4339 0.22 +0.3 5,062,104 - Pf6N2E2_4339 0.22 +0.7 5,062,104 - Pf6N2E2_4339 0.22 -0.1 5,062,104 - Pf6N2E2_4339 0.22 +0.8 5,062,178 + Pf6N2E2_4339 0.28 -0.5 5,062,178 + Pf6N2E2_4339 0.28 -0.1 5,062,179 - Pf6N2E2_4339 0.28 +0.8 5,062,179 - Pf6N2E2_4339 0.28 -1.1 5,062,179 - Pf6N2E2_4339 0.28 -0.3 5,062,179 - Pf6N2E2_4339 0.28 -0.3 5,062,179 - Pf6N2E2_4339 0.28 +0.3 5,062,179 - Pf6N2E2_4339 0.28 +0.5 5,062,295 + Pf6N2E2_4339 0.36 +0.0 5,062,364 + Pf6N2E2_4339 0.42 -0.4 5,062,364 + Pf6N2E2_4339 0.42 -0.1 5,062,364 + Pf6N2E2_4339 0.42 -0.1 5,062,364 + Pf6N2E2_4339 0.42 -0.3 5,062,364 + Pf6N2E2_4339 0.42 -2.0 5,062,364 + Pf6N2E2_4339 0.42 +0.3 5,062,364 + Pf6N2E2_4339 0.42 +0.3 5,062,365 - Pf6N2E2_4339 0.42 +0.5 5,062,365 - Pf6N2E2_4339 0.42 +0.7 5,062,365 - Pf6N2E2_4339 0.42 -0.1 5,062,365 - Pf6N2E2_4339 0.42 +0.2 5,062,365 - Pf6N2E2_4339 0.42 -0.3 5,062,365 - Pf6N2E2_4339 0.42 +0.4 5,062,365 - Pf6N2E2_4339 0.42 -0.4 5,062,365 - Pf6N2E2_4339 0.42 -0.3 5,062,595 + Pf6N2E2_4339 0.59 +0.6 5,062,595 + Pf6N2E2_4339 0.59 +0.2 5,062,673 + Pf6N2E2_4339 0.65 -1.1 5,062,700 + Pf6N2E2_4339 0.67 -1.2 5,062,700 + Pf6N2E2_4339 0.67 -0.3 5,062,701 - Pf6N2E2_4339 0.67 -0.2 5,062,787 + Pf6N2E2_4339 0.73 +1.2
Or see this region's nucleotide sequence