Experiment: perchlorate 0.00625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3530 and Pf6N2E2_3531 are separated by 406 nucleotides Pf6N2E2_3531 and Pf6N2E2_3532 overlap by 1 nucleotides Pf6N2E2_3532 and Pf6N2E2_3533 overlap by 4 nucleotides
Pf6N2E2_3530 - Toxin TcdB, at 4,114,859 to 4,120,618
_3530
Pf6N2E2_3531 - Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase, at 4,121,025 to 4,122,713
_3531
Pf6N2E2_3532 - Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130), at 4,122,713 to 4,123,447
_3532
Pf6N2E2_3533 - Cobalt-precorrin-8x methylmutase (EC 5.4.1.2), at 4,123,444 to 4,124,070
_3533
Position (kb)
4121
4122
4123 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4120.108 kb on - strand at 4120.132 kb on - strand at 4120.132 kb on - strand at 4120.132 kb on - strand at 4120.132 kb on - strand at 4120.188 kb on + strand at 4120.189 kb on - strand at 4120.189 kb on - strand at 4120.189 kb on - strand at 4120.283 kb on - strand at 4120.311 kb on - strand at 4120.321 kb on - strand at 4120.321 kb on - strand at 4120.321 kb on - strand at 4120.370 kb on - strand at 4120.370 kb on - strand at 4120.425 kb on - strand at 4120.462 kb on + strand at 4120.494 kb on + strand at 4120.494 kb on + strand at 4120.494 kb on + strand at 4120.541 kb on - strand at 4120.541 kb on - strand at 4120.570 kb on - strand at 4120.620 kb on + strand at 4120.625 kb on + strand at 4120.625 kb on + strand at 4120.629 kb on + strand at 4120.629 kb on + strand at 4120.630 kb on - strand at 4120.774 kb on + strand at 4120.775 kb on - strand at 4120.840 kb on - strand at 4120.842 kb on + strand at 4120.908 kb on + strand at 4120.908 kb on + strand at 4120.909 kb on - strand at 4120.921 kb on + strand at 4120.922 kb on - strand at 4120.922 kb on - strand at 4120.922 kb on - strand at 4120.925 kb on - strand at 4121.036 kb on + strand at 4121.037 kb on - strand at 4121.059 kb on + strand at 4121.059 kb on + strand at 4121.060 kb on - strand at 4121.299 kb on + strand, within Pf6N2E2_3531 at 4121.299 kb on + strand, within Pf6N2E2_3531 at 4121.299 kb on + strand, within Pf6N2E2_3531 at 4121.299 kb on + strand, within Pf6N2E2_3531 at 4121.299 kb on + strand, within Pf6N2E2_3531 at 4121.683 kb on + strand, within Pf6N2E2_3531 at 4121.683 kb on + strand, within Pf6N2E2_3531 at 4121.683 kb on + strand, within Pf6N2E2_3531 at 4121.684 kb on - strand, within Pf6N2E2_3531 at 4121.857 kb on - strand, within Pf6N2E2_3531 at 4122.035 kb on + strand, within Pf6N2E2_3531 at 4122.036 kb on - strand, within Pf6N2E2_3531 at 4122.104 kb on + strand, within Pf6N2E2_3531 at 4122.104 kb on + strand, within Pf6N2E2_3531 at 4122.105 kb on - strand, within Pf6N2E2_3531 at 4122.551 kb on - strand at 4122.583 kb on + strand at 4122.583 kb on + strand at 4122.583 kb on + strand at 4122.584 kb on - strand at 4122.757 kb on - strand at 4122.828 kb on + strand, within Pf6N2E2_3532 at 4123.063 kb on - strand, within Pf6N2E2_3532 at 4123.089 kb on + strand, within Pf6N2E2_3532 at 4123.089 kb on + strand, within Pf6N2E2_3532 at 4123.089 kb on + strand, within Pf6N2E2_3532 at 4123.089 kb on + strand, within Pf6N2E2_3532 at 4123.089 kb on + strand, within Pf6N2E2_3532 at 4123.089 kb on + strand, within Pf6N2E2_3532 at 4123.089 kb on + strand, within Pf6N2E2_3532 at 4123.090 kb on - strand, within Pf6N2E2_3532 at 4123.090 kb on - strand, within Pf6N2E2_3532 at 4123.090 kb on - strand, within Pf6N2E2_3532 at 4123.095 kb on + strand, within Pf6N2E2_3532 at 4123.095 kb on + strand, within Pf6N2E2_3532 at 4123.096 kb on - strand, within Pf6N2E2_3532 at 4123.096 kb on - strand, within Pf6N2E2_3532 at 4123.096 kb on - strand, within Pf6N2E2_3532 at 4123.096 kb on - strand, within Pf6N2E2_3532 at 4123.096 kb on - strand, within Pf6N2E2_3532 at 4123.096 kb on - strand, within Pf6N2E2_3532 at 4123.096 kb on - strand, within Pf6N2E2_3532 at 4123.212 kb on + strand, within Pf6N2E2_3532 at 4123.213 kb on - strand, within Pf6N2E2_3532 at 4123.252 kb on - strand, within Pf6N2E2_3532 at 4123.339 kb on - strand, within Pf6N2E2_3532 at 4123.339 kb on - strand, within Pf6N2E2_3532 at 4123.646 kb on + strand, within Pf6N2E2_3533 at 4123.646 kb on + strand, within Pf6N2E2_3533 at 4123.646 kb on + strand, within Pf6N2E2_3533 at 4123.647 kb on - strand, within Pf6N2E2_3533 at 4123.647 kb on - strand, within Pf6N2E2_3533 at 4123.647 kb on - strand, within Pf6N2E2_3533 at 4123.647 kb on - strand, within Pf6N2E2_3533 at 4123.647 kb on - strand, within Pf6N2E2_3533
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 0.00625 M remove 4,120,108 - +0.0 4,120,132 - +0.9 4,120,132 - +0.4 4,120,132 - -0.1 4,120,132 - +0.2 4,120,188 + -0.5 4,120,189 - +1.9 4,120,189 - +0.5 4,120,189 - +0.4 4,120,283 - +0.5 4,120,311 - +0.2 4,120,321 - +1.0 4,120,321 - -0.9 4,120,321 - +0.4 4,120,370 - +0.2 4,120,370 - +0.2 4,120,425 - -0.0 4,120,462 + +1.2 4,120,494 + -0.3 4,120,494 + +1.3 4,120,494 + -0.1 4,120,541 - +0.1 4,120,541 - +0.4 4,120,570 - -1.1 4,120,620 + +0.3 4,120,625 + +1.1 4,120,625 + -0.3 4,120,629 + +0.2 4,120,629 + -0.3 4,120,630 - +1.1 4,120,774 + -0.2 4,120,775 - -1.0 4,120,840 - -0.1 4,120,842 + +0.5 4,120,908 + +0.7 4,120,908 + -0.4 4,120,909 - -0.4 4,120,921 + +0.8 4,120,922 - +0.7 4,120,922 - -0.0 4,120,922 - +0.1 4,120,925 - -0.3 4,121,036 + -0.2 4,121,037 - +0.3 4,121,059 + +0.0 4,121,059 + +0.0 4,121,060 - -0.6 4,121,299 + Pf6N2E2_3531 0.16 -0.5 4,121,299 + Pf6N2E2_3531 0.16 +0.6 4,121,299 + Pf6N2E2_3531 0.16 -2.4 4,121,299 + Pf6N2E2_3531 0.16 -0.7 4,121,299 + Pf6N2E2_3531 0.16 -1.3 4,121,683 + Pf6N2E2_3531 0.39 -0.0 4,121,683 + Pf6N2E2_3531 0.39 -2.2 4,121,683 + Pf6N2E2_3531 0.39 -0.2 4,121,684 - Pf6N2E2_3531 0.39 -0.6 4,121,857 - Pf6N2E2_3531 0.49 -0.6 4,122,035 + Pf6N2E2_3531 0.60 +0.1 4,122,036 - Pf6N2E2_3531 0.60 -0.3 4,122,104 + Pf6N2E2_3531 0.64 -0.6 4,122,104 + Pf6N2E2_3531 0.64 -1.5 4,122,105 - Pf6N2E2_3531 0.64 -0.2 4,122,551 - +0.1 4,122,583 + +0.3 4,122,583 + -0.5 4,122,583 + -1.2 4,122,584 - +0.1 4,122,757 - -0.9 4,122,828 + Pf6N2E2_3532 0.16 +0.7 4,123,063 - Pf6N2E2_3532 0.48 -0.3 4,123,089 + Pf6N2E2_3532 0.51 -0.1 4,123,089 + Pf6N2E2_3532 0.51 +1.2 4,123,089 + Pf6N2E2_3532 0.51 +0.6 4,123,089 + Pf6N2E2_3532 0.51 -0.5 4,123,089 + Pf6N2E2_3532 0.51 +0.6 4,123,089 + Pf6N2E2_3532 0.51 -1.2 4,123,089 + Pf6N2E2_3532 0.51 -1.2 4,123,090 - Pf6N2E2_3532 0.51 -0.6 4,123,090 - Pf6N2E2_3532 0.51 -0.4 4,123,090 - Pf6N2E2_3532 0.51 -0.0 4,123,095 + Pf6N2E2_3532 0.52 -0.0 4,123,095 + Pf6N2E2_3532 0.52 -0.4 4,123,096 - Pf6N2E2_3532 0.52 +0.8 4,123,096 - Pf6N2E2_3532 0.52 +1.8 4,123,096 - Pf6N2E2_3532 0.52 -0.2 4,123,096 - Pf6N2E2_3532 0.52 -1.2 4,123,096 - Pf6N2E2_3532 0.52 +0.8 4,123,096 - Pf6N2E2_3532 0.52 -1.0 4,123,096 - Pf6N2E2_3532 0.52 +0.3 4,123,212 + Pf6N2E2_3532 0.68 +0.5 4,123,213 - Pf6N2E2_3532 0.68 -0.5 4,123,252 - Pf6N2E2_3532 0.73 -0.0 4,123,339 - Pf6N2E2_3532 0.85 -0.7 4,123,339 - Pf6N2E2_3532 0.85 -0.9 4,123,646 + Pf6N2E2_3533 0.32 -0.7 4,123,646 + Pf6N2E2_3533 0.32 +0.1 4,123,646 + Pf6N2E2_3533 0.32 +0.2 4,123,647 - Pf6N2E2_3533 0.32 -0.4 4,123,647 - Pf6N2E2_3533 0.32 -1.3 4,123,647 - Pf6N2E2_3533 0.32 +0.5 4,123,647 - Pf6N2E2_3533 0.32 -1.6 4,123,647 - Pf6N2E2_3533 0.32 -0.1
Or see this region's nucleotide sequence