Experiment: perchlorate 0.00625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2982 and Pf6N2E2_2983 are separated by 108 nucleotides Pf6N2E2_2983 and Pf6N2E2_2984 are separated by 61 nucleotides Pf6N2E2_2984 and Pf6N2E2_2985 are separated by 4 nucleotides Pf6N2E2_2985 and Pf6N2E2_2986 are separated by 72 nucleotides
Pf6N2E2_2982 - COG1720: Uncharacterized conserved protein, at 3,477,377 to 3,478,075
_2982
Pf6N2E2_2983 - Ferredoxin--NADP(+) reductase (EC 1.18.1.2), at 3,478,184 to 3,478,963
_2983
Pf6N2E2_2984 - LysR family transcriptional regulator PA3398, at 3,479,025 to 3,480,011
_2984
Pf6N2E2_2985 - Diacylglycerol kinase (EC 2.7.1.107), at 3,480,016 to 3,480,378
_2985
Pf6N2E2_2986 - Transcriptional regulator, LuxR family, at 3,480,451 to 3,481,104
_2986
Position (kb)
3479
3480
3481 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3478.066 kb on + strand at 3478.066 kb on + strand at 3478.185 kb on + strand at 3478.185 kb on + strand at 3478.185 kb on + strand at 3478.185 kb on + strand at 3478.186 kb on - strand at 3478.186 kb on - strand at 3479.094 kb on - strand at 3479.395 kb on - strand, within Pf6N2E2_2984 at 3479.500 kb on - strand, within Pf6N2E2_2984 at 3479.904 kb on - strand, within Pf6N2E2_2984 at 3479.914 kb on - strand at 3480.064 kb on + strand, within Pf6N2E2_2985 at 3480.064 kb on + strand, within Pf6N2E2_2985 at 3480.065 kb on - strand, within Pf6N2E2_2985 at 3480.065 kb on - strand, within Pf6N2E2_2985 at 3480.065 kb on - strand, within Pf6N2E2_2985 at 3480.065 kb on - strand, within Pf6N2E2_2985 at 3480.366 kb on + strand at 3480.366 kb on + strand at 3480.367 kb on - strand at 3480.378 kb on + strand at 3480.378 kb on + strand at 3480.378 kb on + strand at 3480.378 kb on + strand at 3480.378 kb on + strand at 3480.378 kb on + strand at 3480.378 kb on + strand at 3480.378 kb on + strand at 3480.378 kb on + strand at 3480.378 kb on + strand at 3480.379 kb on - strand at 3480.379 kb on - strand at 3480.379 kb on - strand at 3480.379 kb on - strand at 3480.379 kb on - strand at 3480.379 kb on - strand at 3480.379 kb on - strand at 3480.379 kb on - strand at 3480.379 kb on - strand at 3480.414 kb on + strand at 3480.415 kb on - strand at 3480.452 kb on + strand at 3480.452 kb on + strand at 3480.452 kb on + strand at 3480.452 kb on + strand at 3480.452 kb on + strand at 3480.452 kb on + strand at 3480.453 kb on - strand at 3480.453 kb on - strand at 3480.453 kb on - strand at 3480.602 kb on - strand, within Pf6N2E2_2986 at 3480.787 kb on + strand, within Pf6N2E2_2986 at 3480.787 kb on + strand, within Pf6N2E2_2986 at 3480.876 kb on - strand, within Pf6N2E2_2986 at 3480.912 kb on - strand, within Pf6N2E2_2986 at 3480.912 kb on - strand, within Pf6N2E2_2986
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 0.00625 M remove 3,478,066 + -1.0 3,478,066 + +0.1 3,478,185 + +0.9 3,478,185 + -1.1 3,478,185 + -1.1 3,478,185 + -1.0 3,478,186 - +0.6 3,478,186 - +0.5 3,479,094 - +1.0 3,479,395 - Pf6N2E2_2984 0.37 -1.0 3,479,500 - Pf6N2E2_2984 0.48 -1.2 3,479,904 - Pf6N2E2_2984 0.89 -0.4 3,479,914 - +1.5 3,480,064 + Pf6N2E2_2985 0.13 +0.6 3,480,064 + Pf6N2E2_2985 0.13 -1.2 3,480,065 - Pf6N2E2_2985 0.13 +0.7 3,480,065 - Pf6N2E2_2985 0.13 +0.3 3,480,065 - Pf6N2E2_2985 0.13 -0.3 3,480,065 - Pf6N2E2_2985 0.13 +0.6 3,480,366 + +0.2 3,480,366 + -0.6 3,480,367 - +0.1 3,480,378 + +1.0 3,480,378 + +0.2 3,480,378 + +0.1 3,480,378 + +0.8 3,480,378 + +0.3 3,480,378 + -0.3 3,480,378 + -0.9 3,480,378 + +0.8 3,480,378 + +0.6 3,480,378 + -1.5 3,480,379 - -0.3 3,480,379 - +1.7 3,480,379 - -0.0 3,480,379 - -0.3 3,480,379 - -0.1 3,480,379 - +0.4 3,480,379 - +0.5 3,480,379 - -0.6 3,480,379 - +0.2 3,480,414 + -0.1 3,480,415 - +0.7 3,480,452 + -1.8 3,480,452 + -0.4 3,480,452 + +0.1 3,480,452 + +2.1 3,480,452 + +0.7 3,480,452 + +0.1 3,480,453 - +0.8 3,480,453 - -0.2 3,480,453 - -0.3 3,480,602 - Pf6N2E2_2986 0.23 +0.3 3,480,787 + Pf6N2E2_2986 0.51 -0.0 3,480,787 + Pf6N2E2_2986 0.51 +0.4 3,480,876 - Pf6N2E2_2986 0.65 -0.3 3,480,912 - Pf6N2E2_2986 0.70 +0.0 3,480,912 - Pf6N2E2_2986 0.70 -0.6
Or see this region's nucleotide sequence