Experiment: perchlorate 0.00625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1773 and Pf6N2E2_1774 overlap by 4 nucleotides Pf6N2E2_1774 and Pf6N2E2_1775 are separated by 15 nucleotides
Pf6N2E2_1773 - Sensory box histidine kinase, at 2,096,676 to 2,099,672
_1773
Pf6N2E2_1774 - DNA-binding response regulator, LuxR family, near polyamine transporter, at 2,099,669 to 2,100,298
_1774
Pf6N2E2_1775 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 2,100,314 to 2,101,390
_1775
Position (kb)
2099
2100
2101 Strain fitness (log2 ratio)
-1
0
1 at 2098.673 kb on + strand, within Pf6N2E2_1773 at 2098.674 kb on - strand, within Pf6N2E2_1773 at 2098.674 kb on - strand, within Pf6N2E2_1773 at 2098.807 kb on + strand, within Pf6N2E2_1773 at 2098.863 kb on + strand, within Pf6N2E2_1773 at 2098.864 kb on - strand, within Pf6N2E2_1773 at 2098.864 kb on - strand, within Pf6N2E2_1773 at 2098.864 kb on - strand, within Pf6N2E2_1773 at 2098.864 kb on - strand, within Pf6N2E2_1773 at 2098.864 kb on - strand, within Pf6N2E2_1773 at 2098.864 kb on - strand, within Pf6N2E2_1773 at 2098.864 kb on - strand, within Pf6N2E2_1773 at 2098.864 kb on - strand, within Pf6N2E2_1773 at 2098.864 kb on - strand, within Pf6N2E2_1773 at 2098.970 kb on + strand, within Pf6N2E2_1773 at 2098.970 kb on + strand, within Pf6N2E2_1773 at 2098.972 kb on + strand, within Pf6N2E2_1773 at 2098.972 kb on + strand, within Pf6N2E2_1773 at 2098.972 kb on + strand, within Pf6N2E2_1773 at 2098.972 kb on + strand, within Pf6N2E2_1773 at 2098.972 kb on + strand, within Pf6N2E2_1773 at 2098.972 kb on + strand, within Pf6N2E2_1773 at 2098.973 kb on - strand, within Pf6N2E2_1773 at 2098.973 kb on - strand, within Pf6N2E2_1773 at 2098.973 kb on - strand, within Pf6N2E2_1773 at 2098.973 kb on - strand, within Pf6N2E2_1773 at 2098.973 kb on - strand, within Pf6N2E2_1773 at 2098.973 kb on - strand, within Pf6N2E2_1773 at 2098.973 kb on - strand, within Pf6N2E2_1773 at 2099.154 kb on + strand, within Pf6N2E2_1773 at 2099.396 kb on + strand at 2099.397 kb on - strand at 2099.456 kb on + strand at 2099.821 kb on - strand, within Pf6N2E2_1774 at 2100.200 kb on - strand, within Pf6N2E2_1774 at 2100.418 kb on - strand at 2100.418 kb on - strand at 2100.418 kb on - strand at 2100.647 kb on + strand, within Pf6N2E2_1775 at 2100.648 kb on - strand, within Pf6N2E2_1775 at 2100.648 kb on - strand, within Pf6N2E2_1775 at 2100.653 kb on - strand, within Pf6N2E2_1775 at 2100.831 kb on - strand, within Pf6N2E2_1775 at 2100.831 kb on - strand, within Pf6N2E2_1775 at 2100.865 kb on + strand, within Pf6N2E2_1775 at 2100.866 kb on - strand, within Pf6N2E2_1775 at 2101.196 kb on - strand, within Pf6N2E2_1775 at 2101.273 kb on - strand, within Pf6N2E2_1775
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 0.00625 M remove 2,098,673 + Pf6N2E2_1773 0.67 -1.1 2,098,674 - Pf6N2E2_1773 0.67 +0.3 2,098,674 - Pf6N2E2_1773 0.67 +0.6 2,098,807 + Pf6N2E2_1773 0.71 +0.1 2,098,863 + Pf6N2E2_1773 0.73 -0.4 2,098,864 - Pf6N2E2_1773 0.73 -1.0 2,098,864 - Pf6N2E2_1773 0.73 +1.2 2,098,864 - Pf6N2E2_1773 0.73 +0.6 2,098,864 - Pf6N2E2_1773 0.73 -0.4 2,098,864 - Pf6N2E2_1773 0.73 -0.1 2,098,864 - Pf6N2E2_1773 0.73 -0.8 2,098,864 - Pf6N2E2_1773 0.73 -0.5 2,098,864 - Pf6N2E2_1773 0.73 -0.2 2,098,864 - Pf6N2E2_1773 0.73 +0.3 2,098,970 + Pf6N2E2_1773 0.77 -0.1 2,098,970 + Pf6N2E2_1773 0.77 -0.2 2,098,972 + Pf6N2E2_1773 0.77 +0.5 2,098,972 + Pf6N2E2_1773 0.77 +1.4 2,098,972 + Pf6N2E2_1773 0.77 -0.4 2,098,972 + Pf6N2E2_1773 0.77 -0.7 2,098,972 + Pf6N2E2_1773 0.77 -0.2 2,098,972 + Pf6N2E2_1773 0.77 +0.4 2,098,973 - Pf6N2E2_1773 0.77 -0.2 2,098,973 - Pf6N2E2_1773 0.77 +0.8 2,098,973 - Pf6N2E2_1773 0.77 -1.2 2,098,973 - Pf6N2E2_1773 0.77 +0.5 2,098,973 - Pf6N2E2_1773 0.77 +1.0 2,098,973 - Pf6N2E2_1773 0.77 +0.2 2,098,973 - Pf6N2E2_1773 0.77 -0.8 2,099,154 + Pf6N2E2_1773 0.83 +0.1 2,099,396 + +1.1 2,099,397 - +0.2 2,099,456 + -1.3 2,099,821 - Pf6N2E2_1774 0.24 -1.2 2,100,200 - Pf6N2E2_1774 0.84 +0.3 2,100,418 - +0.5 2,100,418 - +1.0 2,100,418 - +0.7 2,100,647 + Pf6N2E2_1775 0.31 +0.3 2,100,648 - Pf6N2E2_1775 0.31 +0.0 2,100,648 - Pf6N2E2_1775 0.31 +0.7 2,100,653 - Pf6N2E2_1775 0.31 -1.3 2,100,831 - Pf6N2E2_1775 0.48 +0.1 2,100,831 - Pf6N2E2_1775 0.48 -0.5 2,100,865 + Pf6N2E2_1775 0.51 -0.4 2,100,866 - Pf6N2E2_1775 0.51 -0.6 2,101,196 - Pf6N2E2_1775 0.82 +1.5 2,101,273 - Pf6N2E2_1775 0.89 -1.4
Or see this region's nucleotide sequence