Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_594

Experiment: DEANONOate 0.000625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_592 and Pf6N2E2_593 are separated by 86 nucleotidesPf6N2E2_593 and Pf6N2E2_594 are separated by 203 nucleotidesPf6N2E2_594 and Pf6N2E2_595 are separated by 197 nucleotidesPf6N2E2_595 and Pf6N2E2_596 are separated by 37 nucleotides Pf6N2E2_592 - Transcriptional regulators, LysR family, at 669,026 to 669,919 _592 Pf6N2E2_593 - FIG00958166: hypothetical protein, at 670,006 to 670,269 _593 Pf6N2E2_594 - FMN reductase, NADPH-dependent, at 670,473 to 671,012 _594 Pf6N2E2_595 - Arsenical resistance operon repressor, at 671,210 to 671,560 _595 Pf6N2E2_596 - Arsenic efflux pump protein, at 671,598 to 672,881 _596 Position (kb) 670 671 672Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 669.634 kb on + strand, within Pf6N2E2_592at 669.635 kb on - strand, within Pf6N2E2_592at 669.657 kb on + strand, within Pf6N2E2_592at 669.705 kb on + strand, within Pf6N2E2_592at 669.912 kb on - strandat 669.997 kb on - strandat 670.015 kb on + strandat 670.143 kb on + strand, within Pf6N2E2_593at 670.143 kb on + strand, within Pf6N2E2_593at 670.144 kb on - strand, within Pf6N2E2_593at 670.144 kb on - strand, within Pf6N2E2_593at 670.144 kb on - strand, within Pf6N2E2_593at 670.145 kb on + strand, within Pf6N2E2_593at 670.145 kb on + strand, within Pf6N2E2_593at 670.145 kb on + strand, within Pf6N2E2_593at 670.146 kb on - strand, within Pf6N2E2_593at 670.146 kb on - strand, within Pf6N2E2_593at 670.146 kb on - strand, within Pf6N2E2_593at 670.259 kb on - strandat 670.275 kb on - strandat 670.343 kb on + strandat 670.344 kb on - strandat 670.412 kb on + strandat 670.412 kb on + strandat 670.412 kb on + strandat 670.412 kb on + strandat 670.412 kb on + strandat 670.412 kb on + strandat 670.413 kb on - strandat 670.413 kb on - strandat 670.414 kb on + strandat 670.414 kb on + strandat 670.415 kb on - strandat 670.415 kb on - strandat 670.415 kb on - strandat 670.418 kb on + strandat 670.418 kb on + strandat 670.418 kb on + strandat 670.418 kb on + strandat 670.418 kb on + strandat 670.419 kb on - strandat 670.460 kb on + strandat 670.460 kb on + strandat 670.460 kb on + strandat 670.461 kb on - strandat 670.461 kb on - strandat 670.461 kb on - strandat 670.467 kb on + strandat 670.596 kb on + strand, within Pf6N2E2_594at 670.597 kb on - strand, within Pf6N2E2_594at 670.597 kb on - strand, within Pf6N2E2_594at 670.597 kb on - strand, within Pf6N2E2_594at 670.597 kb on - strand, within Pf6N2E2_594at 670.597 kb on - strand, within Pf6N2E2_594at 670.598 kb on + strand, within Pf6N2E2_594at 670.598 kb on + strand, within Pf6N2E2_594at 670.599 kb on - strand, within Pf6N2E2_594at 670.615 kb on + strand, within Pf6N2E2_594at 670.615 kb on + strand, within Pf6N2E2_594at 670.615 kb on + strand, within Pf6N2E2_594at 670.615 kb on + strand, within Pf6N2E2_594at 670.632 kb on + strand, within Pf6N2E2_594at 670.632 kb on + strand, within Pf6N2E2_594at 670.632 kb on + strand, within Pf6N2E2_594at 670.692 kb on + strand, within Pf6N2E2_594at 670.692 kb on + strand, within Pf6N2E2_594at 670.692 kb on + strand, within Pf6N2E2_594at 670.692 kb on + strand, within Pf6N2E2_594at 670.693 kb on - strand, within Pf6N2E2_594at 670.968 kb on - strandat 670.968 kb on - strandat 671.031 kb on - strandat 671.173 kb on - strandat 671.174 kb on + strandat 671.175 kb on - strandat 671.175 kb on - strandat 671.188 kb on + strandat 671.206 kb on - strandat 671.206 kb on - strandat 671.420 kb on + strand, within Pf6N2E2_595at 671.420 kb on + strand, within Pf6N2E2_595at 671.424 kb on - strand, within Pf6N2E2_595at 671.424 kb on - strand, within Pf6N2E2_595at 671.633 kb on + strandat 671.633 kb on + strandat 671.633 kb on + strandat 671.753 kb on + strand, within Pf6N2E2_596at 671.771 kb on + strand, within Pf6N2E2_596at 671.771 kb on + strand, within Pf6N2E2_596at 671.772 kb on - strand, within Pf6N2E2_596at 671.888 kb on + strand, within Pf6N2E2_596at 671.888 kb on + strand, within Pf6N2E2_596at 671.888 kb on + strand, within Pf6N2E2_596

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Per-strain Table

Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M
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669,634 + Pf6N2E2_592 0.68 +1.5
669,635 - Pf6N2E2_592 0.68 -3.2
669,657 + Pf6N2E2_592 0.71 -1.9
669,705 + Pf6N2E2_592 0.76 -0.8
669,912 - -0.3
669,997 - -0.3
670,015 + -2.0
670,143 + Pf6N2E2_593 0.52 -0.4
670,143 + Pf6N2E2_593 0.52 -0.9
670,144 - Pf6N2E2_593 0.52 -1.0
670,144 - Pf6N2E2_593 0.52 -0.7
670,144 - Pf6N2E2_593 0.52 +0.2
670,145 + Pf6N2E2_593 0.53 +1.0
670,145 + Pf6N2E2_593 0.53 +1.2
670,145 + Pf6N2E2_593 0.53 +1.8
670,146 - Pf6N2E2_593 0.53 +0.7
670,146 - Pf6N2E2_593 0.53 +1.6
670,146 - Pf6N2E2_593 0.53 +0.3
670,259 - -1.8
670,275 - -1.9
670,343 + +1.8
670,344 - -2.8
670,412 + +1.1
670,412 + -2.0
670,412 + -1.6
670,412 + -0.8
670,412 + +0.8
670,412 + +1.8
670,413 - -0.2
670,413 - -0.0
670,414 + +0.9
670,414 + +0.1
670,415 - -1.2
670,415 - -2.0
670,415 - +0.8
670,418 + +1.8
670,418 + +0.6
670,418 + -0.8
670,418 + -2.1
670,418 + +0.6
670,419 - +2.6
670,460 + -1.2
670,460 + -0.9
670,460 + +1.4
670,461 - -3.2
670,461 - -2.5
670,461 - -1.5
670,467 + -1.5
670,596 + Pf6N2E2_594 0.23 +0.5
670,597 - Pf6N2E2_594 0.23 -0.0
670,597 - Pf6N2E2_594 0.23 +0.8
670,597 - Pf6N2E2_594 0.23 +0.4
670,597 - Pf6N2E2_594 0.23 +1.6
670,597 - Pf6N2E2_594 0.23 -2.4
670,598 + Pf6N2E2_594 0.23 -0.3
670,598 + Pf6N2E2_594 0.23 -0.9
670,599 - Pf6N2E2_594 0.23 -0.9
670,615 + Pf6N2E2_594 0.26 -0.2
670,615 + Pf6N2E2_594 0.26 -1.2
670,615 + Pf6N2E2_594 0.26 +0.6
670,615 + Pf6N2E2_594 0.26 -0.8
670,632 + Pf6N2E2_594 0.29 -1.2
670,632 + Pf6N2E2_594 0.29 -2.5
670,632 + Pf6N2E2_594 0.29 -1.9
670,692 + Pf6N2E2_594 0.41 -2.4
670,692 + Pf6N2E2_594 0.41 +0.1
670,692 + Pf6N2E2_594 0.41 -0.5
670,692 + Pf6N2E2_594 0.41 +0.5
670,693 - Pf6N2E2_594 0.41 -0.7
670,968 - -2.4
670,968 - +2.6
671,031 - -0.6
671,173 - -3.0
671,174 + -0.7
671,175 - -0.2
671,175 - -0.8
671,188 + -0.0
671,206 - -0.2
671,206 - -0.7
671,420 + Pf6N2E2_595 0.60 +1.4
671,420 + Pf6N2E2_595 0.60 -1.7
671,424 - Pf6N2E2_595 0.61 -1.5
671,424 - Pf6N2E2_595 0.61 -0.9
671,633 + +2.5
671,633 + +0.3
671,633 + -0.2
671,753 + Pf6N2E2_596 0.12 -0.2
671,771 + Pf6N2E2_596 0.13 +0.7
671,771 + Pf6N2E2_596 0.13 -0.8
671,772 - Pf6N2E2_596 0.14 -0.2
671,888 + Pf6N2E2_596 0.23 +0.8
671,888 + Pf6N2E2_596 0.23 -0.0
671,888 + Pf6N2E2_596 0.23 -1.2

Or see this region's nucleotide sequence