Experiment: DEANONOate 0.000625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5765 and Pf6N2E2_5766 are separated by 41 nucleotides Pf6N2E2_5766 and Pf6N2E2_5767 are separated by 118 nucleotides Pf6N2E2_5767 and Pf6N2E2_5768 are separated by 75 nucleotides
Pf6N2E2_5765 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 6,579,863 to 6,581,737
_5765
Pf6N2E2_5766 - Quaternary ammonium compound-resistance protein SugE, at 6,581,779 to 6,582,093
_5766
Pf6N2E2_5767 - Sodium-dependent transporter, at 6,582,212 to 6,583,177
_5767
Pf6N2E2_5768 - DNA recombination-dependent growth factor C, at 6,583,253 to 6,584,173
_5768
Position (kb)
6582
6583
6584 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 6581.315 kb on + strand, within Pf6N2E2_5765 at 6581.315 kb on + strand, within Pf6N2E2_5765 at 6581.315 kb on + strand, within Pf6N2E2_5765 at 6581.316 kb on - strand, within Pf6N2E2_5765 at 6581.316 kb on - strand, within Pf6N2E2_5765 at 6581.316 kb on - strand, within Pf6N2E2_5765 at 6581.316 kb on - strand, within Pf6N2E2_5765 at 6581.318 kb on + strand, within Pf6N2E2_5765 at 6581.319 kb on - strand, within Pf6N2E2_5765 at 6581.319 kb on - strand, within Pf6N2E2_5765 at 6581.319 kb on - strand, within Pf6N2E2_5765 at 6581.319 kb on - strand, within Pf6N2E2_5765 at 6581.327 kb on + strand, within Pf6N2E2_5765 at 6581.328 kb on - strand, within Pf6N2E2_5765 at 6581.328 kb on - strand, within Pf6N2E2_5765 at 6581.328 kb on - strand, within Pf6N2E2_5765 at 6581.328 kb on - strand, within Pf6N2E2_5765 at 6581.404 kb on + strand, within Pf6N2E2_5765 at 6581.404 kb on + strand, within Pf6N2E2_5765 at 6581.404 kb on + strand, within Pf6N2E2_5765 at 6581.404 kb on + strand, within Pf6N2E2_5765 at 6581.404 kb on + strand, within Pf6N2E2_5765 at 6581.404 kb on + strand, within Pf6N2E2_5765 at 6581.404 kb on + strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.408 kb on + strand, within Pf6N2E2_5765 at 6581.409 kb on - strand, within Pf6N2E2_5765 at 6581.439 kb on - strand, within Pf6N2E2_5765 at 6581.439 kb on - strand, within Pf6N2E2_5765 at 6581.735 kb on + strand at 6581.775 kb on + strand at 6581.776 kb on - strand at 6581.776 kb on - strand at 6581.776 kb on - strand at 6581.776 kb on - strand at 6582.030 kb on - strand, within Pf6N2E2_5766 at 6582.141 kb on + strand at 6582.236 kb on + strand at 6582.237 kb on - strand at 6582.237 kb on - strand at 6582.274 kb on - strand at 6582.415 kb on + strand, within Pf6N2E2_5767 at 6582.416 kb on - strand, within Pf6N2E2_5767 at 6582.416 kb on - strand, within Pf6N2E2_5767 at 6582.416 kb on - strand, within Pf6N2E2_5767 at 6582.416 kb on - strand, within Pf6N2E2_5767 at 6582.416 kb on - strand, within Pf6N2E2_5767 at 6582.456 kb on + strand, within Pf6N2E2_5767 at 6582.457 kb on - strand, within Pf6N2E2_5767 at 6582.596 kb on + strand, within Pf6N2E2_5767 at 6582.597 kb on - strand, within Pf6N2E2_5767 at 6582.597 kb on - strand, within Pf6N2E2_5767 at 6582.597 kb on - strand, within Pf6N2E2_5767 at 6582.597 kb on - strand, within Pf6N2E2_5767 at 6582.597 kb on - strand, within Pf6N2E2_5767 at 6582.659 kb on - strand, within Pf6N2E2_5767 at 6583.138 kb on + strand at 6583.138 kb on + strand at 6583.139 kb on - strand at 6583.189 kb on + strand at 6583.189 kb on + strand at 6583.190 kb on - strand at 6583.190 kb on - strand at 6583.190 kb on - strand at 6583.190 kb on - strand at 6583.190 kb on - strand at 6583.190 kb on - strand at 6583.190 kb on - strand at 6583.190 kb on - strand at 6583.192 kb on + strand at 6583.192 kb on + strand at 6583.192 kb on + strand at 6583.192 kb on + strand at 6583.193 kb on - strand at 6583.193 kb on - strand at 6583.193 kb on - strand at 6583.193 kb on - strand at 6583.193 kb on - strand at 6583.195 kb on + strand at 6583.196 kb on - strand at 6583.209 kb on - strand at 6583.211 kb on + strand at 6583.211 kb on + strand at 6583.211 kb on + strand at 6583.211 kb on + strand at 6583.211 kb on + strand at 6583.211 kb on + strand at 6583.211 kb on + strand at 6583.211 kb on + strand at 6583.212 kb on - strand at 6583.212 kb on - strand at 6583.212 kb on - strand at 6583.212 kb on - strand at 6583.212 kb on - strand at 6583.212 kb on - strand at 6583.212 kb on - strand at 6583.255 kb on - strand at 6583.258 kb on + strand at 6583.258 kb on + strand at 6583.259 kb on - strand at 6583.686 kb on - strand, within Pf6N2E2_5768 at 6583.874 kb on - strand, within Pf6N2E2_5768 at 6583.875 kb on + strand, within Pf6N2E2_5768 at 6583.875 kb on + strand, within Pf6N2E2_5768 at 6583.875 kb on + strand, within Pf6N2E2_5768 at 6583.876 kb on - strand, within Pf6N2E2_5768 at 6584.049 kb on + strand, within Pf6N2E2_5768 at 6584.049 kb on + strand, within Pf6N2E2_5768 at 6584.050 kb on - strand, within Pf6N2E2_5768 at 6584.050 kb on - strand, within Pf6N2E2_5768 at 6584.148 kb on + strand at 6584.149 kb on - strand at 6584.152 kb on + strand at 6584.152 kb on + strand at 6584.152 kb on + strand at 6584.153 kb on - strand at 6584.153 kb on - strand at 6584.153 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M remove 6,581,315 + Pf6N2E2_5765 0.77 -1.1 6,581,315 + Pf6N2E2_5765 0.77 +1.3 6,581,315 + Pf6N2E2_5765 0.77 +1.0 6,581,316 - Pf6N2E2_5765 0.77 +1.1 6,581,316 - Pf6N2E2_5765 0.77 +1.1 6,581,316 - Pf6N2E2_5765 0.77 +1.8 6,581,316 - Pf6N2E2_5765 0.77 +1.6 6,581,318 + Pf6N2E2_5765 0.78 +1.2 6,581,319 - Pf6N2E2_5765 0.78 +0.3 6,581,319 - Pf6N2E2_5765 0.78 -0.1 6,581,319 - Pf6N2E2_5765 0.78 +0.9 6,581,319 - Pf6N2E2_5765 0.78 -1.7 6,581,327 + Pf6N2E2_5765 0.78 +0.4 6,581,328 - Pf6N2E2_5765 0.78 +1.7 6,581,328 - Pf6N2E2_5765 0.78 -0.5 6,581,328 - Pf6N2E2_5765 0.78 +2.1 6,581,328 - Pf6N2E2_5765 0.78 +0.9 6,581,404 + Pf6N2E2_5765 0.82 +1.7 6,581,404 + Pf6N2E2_5765 0.82 +2.1 6,581,404 + Pf6N2E2_5765 0.82 -0.5 6,581,404 + Pf6N2E2_5765 0.82 +0.7 6,581,404 + Pf6N2E2_5765 0.82 -1.5 6,581,404 + Pf6N2E2_5765 0.82 +1.2 6,581,404 + Pf6N2E2_5765 0.82 -0.1 6,581,405 - Pf6N2E2_5765 0.82 -0.2 6,581,405 - Pf6N2E2_5765 0.82 +1.5 6,581,405 - Pf6N2E2_5765 0.82 -0.2 6,581,405 - Pf6N2E2_5765 0.82 +0.9 6,581,405 - Pf6N2E2_5765 0.82 +0.6 6,581,405 - Pf6N2E2_5765 0.82 +1.0 6,581,405 - Pf6N2E2_5765 0.82 +0.1 6,581,405 - Pf6N2E2_5765 0.82 +1.5 6,581,405 - Pf6N2E2_5765 0.82 +1.3 6,581,405 - Pf6N2E2_5765 0.82 +0.6 6,581,405 - Pf6N2E2_5765 0.82 +0.9 6,581,405 - Pf6N2E2_5765 0.82 +0.8 6,581,408 + Pf6N2E2_5765 0.82 +0.9 6,581,409 - Pf6N2E2_5765 0.82 +2.2 6,581,439 - Pf6N2E2_5765 0.84 -1.0 6,581,439 - Pf6N2E2_5765 0.84 +0.1 6,581,735 + -0.7 6,581,775 + +1.7 6,581,776 - -0.1 6,581,776 - +0.4 6,581,776 - -0.7 6,581,776 - +0.1 6,582,030 - Pf6N2E2_5766 0.80 -1.7 6,582,141 + -0.3 6,582,236 + -2.0 6,582,237 - -0.3 6,582,237 - +0.8 6,582,274 - +2.2 6,582,415 + Pf6N2E2_5767 0.21 +0.9 6,582,416 - Pf6N2E2_5767 0.21 -0.5 6,582,416 - Pf6N2E2_5767 0.21 +0.8 6,582,416 - Pf6N2E2_5767 0.21 +4.2 6,582,416 - Pf6N2E2_5767 0.21 +2.1 6,582,416 - Pf6N2E2_5767 0.21 +1.5 6,582,456 + Pf6N2E2_5767 0.25 -3.1 6,582,457 - Pf6N2E2_5767 0.25 +0.8 6,582,596 + Pf6N2E2_5767 0.40 -0.4 6,582,597 - Pf6N2E2_5767 0.40 -0.7 6,582,597 - Pf6N2E2_5767 0.40 +0.6 6,582,597 - Pf6N2E2_5767 0.40 +0.2 6,582,597 - Pf6N2E2_5767 0.40 +1.4 6,582,597 - Pf6N2E2_5767 0.40 +1.8 6,582,659 - Pf6N2E2_5767 0.46 +0.5 6,583,138 + -0.4 6,583,138 + -2.7 6,583,139 - +0.3 6,583,189 + +1.6 6,583,189 + -1.9 6,583,190 - +2.0 6,583,190 - -0.0 6,583,190 - -0.7 6,583,190 - +1.0 6,583,190 - +1.9 6,583,190 - +0.0 6,583,190 - -0.5 6,583,190 - +0.7 6,583,192 + -1.0 6,583,192 + -3.6 6,583,192 + +1.7 6,583,192 + -3.1 6,583,193 - -1.0 6,583,193 - +0.8 6,583,193 - +0.9 6,583,193 - -1.5 6,583,193 - -2.5 6,583,195 + -1.0 6,583,196 - +1.2 6,583,209 - +2.0 6,583,211 + -2.3 6,583,211 + -1.5 6,583,211 + +1.3 6,583,211 + +0.4 6,583,211 + +0.8 6,583,211 + -0.1 6,583,211 + +1.5 6,583,211 + +0.8 6,583,212 - +2.0 6,583,212 - -0.1 6,583,212 - +0.1 6,583,212 - +0.4 6,583,212 - -0.4 6,583,212 - +0.9 6,583,212 - +1.7 6,583,255 - -0.2 6,583,258 + +1.1 6,583,258 + +0.4 6,583,259 - -1.3 6,583,686 - Pf6N2E2_5768 0.47 -0.5 6,583,874 - Pf6N2E2_5768 0.67 -2.1 6,583,875 + Pf6N2E2_5768 0.68 -0.9 6,583,875 + Pf6N2E2_5768 0.68 -0.4 6,583,875 + Pf6N2E2_5768 0.68 -0.1 6,583,876 - Pf6N2E2_5768 0.68 -1.7 6,584,049 + Pf6N2E2_5768 0.86 +1.2 6,584,049 + Pf6N2E2_5768 0.86 -0.2 6,584,050 - Pf6N2E2_5768 0.87 -2.9 6,584,050 - Pf6N2E2_5768 0.87 -1.2 6,584,148 + -1.9 6,584,149 - -2.8 6,584,152 + -1.3 6,584,152 + -3.5 6,584,152 + -2.1 6,584,153 - +0.1 6,584,153 - +1.9 6,584,153 - -2.8
Or see this region's nucleotide sequence