Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3063

Experiment: DEANONOate 0.000625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3062 and Pf6N2E2_3063 are separated by 67 nucleotidesPf6N2E2_3063 and Pf6N2E2_3064 overlap by 4 nucleotidesPf6N2E2_3064 and Pf6N2E2_3065 overlap by 1 nucleotides Pf6N2E2_3062 - Membrane-associated zinc metalloprotease, at 3,548,757 to 3,550,094 _3062 Pf6N2E2_3063 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267), at 3,550,162 to 3,551,352 _3063 Pf6N2E2_3064 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 3,551,349 to 3,552,155 _3064 Pf6N2E2_3065 - Undecaprenyl diphosphate synthase (EC 2.5.1.31), at 3,552,155 to 3,552,910 _3065 Position (kb) 3550 3551 3552Strain fitness (log2 ratio) -3 -2 -1 0 1at 3549.299 kb on + strand, within Pf6N2E2_3062at 3549.300 kb on - strand, within Pf6N2E2_3062at 3549.300 kb on - strand, within Pf6N2E2_3062at 3549.302 kb on + strand, within Pf6N2E2_3062at 3549.822 kb on - strand, within Pf6N2E2_3062at 3549.822 kb on - strand, within Pf6N2E2_3062at 3549.822 kb on - strand, within Pf6N2E2_3062at 3549.822 kb on - strand, within Pf6N2E2_3062at 3549.908 kb on - strand, within Pf6N2E2_3062at 3550.094 kb on + strandat 3550.095 kb on - strandat 3550.095 kb on - strandat 3550.095 kb on - strandat 3550.095 kb on - strandat 3550.095 kb on - strandat 3550.095 kb on - strandat 3550.097 kb on - strandat 3550.097 kb on - strandat 3550.152 kb on + strandat 3550.152 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M
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3,549,299 + Pf6N2E2_3062 0.41 +0.2
3,549,300 - Pf6N2E2_3062 0.41 -1.7
3,549,300 - Pf6N2E2_3062 0.41 -3.1
3,549,302 + Pf6N2E2_3062 0.41 -1.3
3,549,822 - Pf6N2E2_3062 0.80 -1.4
3,549,822 - Pf6N2E2_3062 0.80 -2.9
3,549,822 - Pf6N2E2_3062 0.80 -2.4
3,549,822 - Pf6N2E2_3062 0.80 -3.1
3,549,908 - Pf6N2E2_3062 0.86 -1.5
3,550,094 + -2.1
3,550,095 - -1.1
3,550,095 - -0.8
3,550,095 - -3.4
3,550,095 - -2.0
3,550,095 - -2.4
3,550,095 - -2.3
3,550,097 - -2.8
3,550,097 - -2.2
3,550,152 + -2.3
3,550,152 + -2.0

Or see this region's nucleotide sequence