Experiment: DEANONOate 0.000625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2565 and Pf6N2E2_2566 are separated by 33 nucleotides Pf6N2E2_2566 and Pf6N2E2_2567 are separated by 49 nucleotides Pf6N2E2_2567 and Pf6N2E2_2568 are separated by 15 nucleotides Pf6N2E2_2568 and Pf6N2E2_2569 overlap by 1 nucleotides
Pf6N2E2_2565 - CheW domain protein, at 3,022,936 to 3,023,874
_2565
Pf6N2E2_2566 - Chromosome (plasmid) partitioning protein ParA, at 3,023,908 to 3,024,699
_2566
Pf6N2E2_2567 - Flagellar motor rotation protein MotB, at 3,024,749 to 3,025,633
_2567
Pf6N2E2_2568 - Flagellar motor rotation protein MotA, at 3,025,649 to 3,026,389
_2568
Pf6N2E2_2569 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 3,026,389 to 3,027,522
_2569
Position (kb)
3024
3025
3026 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3023.760 kb on - strand, within Pf6N2E2_2565 at 3023.760 kb on - strand, within Pf6N2E2_2565 at 3023.798 kb on - strand at 3023.811 kb on + strand at 3023.909 kb on + strand at 3024.055 kb on - strand, within Pf6N2E2_2566 at 3024.056 kb on + strand, within Pf6N2E2_2566 at 3024.056 kb on + strand, within Pf6N2E2_2566 at 3024.056 kb on + strand, within Pf6N2E2_2566 at 3024.056 kb on + strand, within Pf6N2E2_2566 at 3024.056 kb on + strand, within Pf6N2E2_2566 at 3024.057 kb on - strand, within Pf6N2E2_2566 at 3024.057 kb on - strand, within Pf6N2E2_2566 at 3024.057 kb on - strand, within Pf6N2E2_2566 at 3024.057 kb on - strand, within Pf6N2E2_2566 at 3024.057 kb on - strand, within Pf6N2E2_2566 at 3024.080 kb on + strand, within Pf6N2E2_2566 at 3024.081 kb on - strand, within Pf6N2E2_2566 at 3024.081 kb on - strand, within Pf6N2E2_2566 at 3024.081 kb on - strand, within Pf6N2E2_2566 at 3024.198 kb on + strand, within Pf6N2E2_2566 at 3024.198 kb on + strand, within Pf6N2E2_2566 at 3024.198 kb on + strand, within Pf6N2E2_2566 at 3024.198 kb on + strand, within Pf6N2E2_2566 at 3024.199 kb on - strand, within Pf6N2E2_2566 at 3024.521 kb on + strand, within Pf6N2E2_2566 at 3024.560 kb on + strand, within Pf6N2E2_2566 at 3024.560 kb on + strand, within Pf6N2E2_2566 at 3024.741 kb on + strand at 3024.741 kb on + strand at 3024.750 kb on + strand at 3024.752 kb on + strand at 3024.753 kb on - strand at 3024.753 kb on - strand at 3025.169 kb on - strand, within Pf6N2E2_2567 at 3025.169 kb on - strand, within Pf6N2E2_2567 at 3025.177 kb on + strand, within Pf6N2E2_2567 at 3025.177 kb on + strand, within Pf6N2E2_2567 at 3025.178 kb on - strand, within Pf6N2E2_2567 at 3025.178 kb on - strand, within Pf6N2E2_2567 at 3025.189 kb on + strand, within Pf6N2E2_2567 at 3025.189 kb on + strand, within Pf6N2E2_2567 at 3025.189 kb on + strand, within Pf6N2E2_2567 at 3025.500 kb on + strand, within Pf6N2E2_2567 at 3025.501 kb on - strand, within Pf6N2E2_2567 at 3025.501 kb on - strand, within Pf6N2E2_2567 at 3025.501 kb on - strand, within Pf6N2E2_2567 at 3025.531 kb on - strand, within Pf6N2E2_2567 at 3025.531 kb on - strand, within Pf6N2E2_2567 at 3025.531 kb on - strand, within Pf6N2E2_2567 at 3025.561 kb on + strand at 3025.561 kb on + strand at 3025.575 kb on + strand at 3025.818 kb on + strand, within Pf6N2E2_2568 at 3025.818 kb on + strand, within Pf6N2E2_2568 at 3025.819 kb on - strand, within Pf6N2E2_2568 at 3025.819 kb on - strand, within Pf6N2E2_2568 at 3025.819 kb on - strand, within Pf6N2E2_2568 at 3025.819 kb on - strand, within Pf6N2E2_2568 at 3025.819 kb on - strand, within Pf6N2E2_2568 at 3025.819 kb on - strand, within Pf6N2E2_2568 at 3025.886 kb on + strand, within Pf6N2E2_2568 at 3025.886 kb on + strand, within Pf6N2E2_2568 at 3025.887 kb on - strand, within Pf6N2E2_2568 at 3025.887 kb on - strand, within Pf6N2E2_2568 at 3025.992 kb on + strand, within Pf6N2E2_2568 at 3026.070 kb on + strand, within Pf6N2E2_2568 at 3026.108 kb on + strand, within Pf6N2E2_2568 at 3026.108 kb on + strand, within Pf6N2E2_2568 at 3026.109 kb on - strand, within Pf6N2E2_2568 at 3026.328 kb on + strand at 3026.329 kb on - strand at 3026.329 kb on - strand at 3026.415 kb on + strand at 3026.415 kb on + strand at 3026.484 kb on - strand at 3026.484 kb on - strand at 3026.484 kb on - strand at 3026.484 kb on - strand at 3026.607 kb on - strand, within Pf6N2E2_2569 at 3026.631 kb on + strand, within Pf6N2E2_2569 at 3026.631 kb on + strand, within Pf6N2E2_2569 at 3026.631 kb on + strand, within Pf6N2E2_2569 at 3026.631 kb on + strand, within Pf6N2E2_2569 at 3026.631 kb on + strand, within Pf6N2E2_2569 at 3026.632 kb on - strand, within Pf6N2E2_2569 at 3026.632 kb on - strand, within Pf6N2E2_2569 at 3026.632 kb on - strand, within Pf6N2E2_2569 at 3026.632 kb on - strand, within Pf6N2E2_2569
Per-strain Table
Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M remove 3,023,760 - Pf6N2E2_2565 0.88 -0.6 3,023,760 - Pf6N2E2_2565 0.88 -0.4 3,023,798 - -3.0 3,023,811 + -0.8 3,023,909 + -0.1 3,024,055 - Pf6N2E2_2566 0.19 +0.3 3,024,056 + Pf6N2E2_2566 0.19 -0.6 3,024,056 + Pf6N2E2_2566 0.19 -0.3 3,024,056 + Pf6N2E2_2566 0.19 -2.7 3,024,056 + Pf6N2E2_2566 0.19 +1.1 3,024,056 + Pf6N2E2_2566 0.19 +0.1 3,024,057 - Pf6N2E2_2566 0.19 -1.4 3,024,057 - Pf6N2E2_2566 0.19 -0.2 3,024,057 - Pf6N2E2_2566 0.19 -0.7 3,024,057 - Pf6N2E2_2566 0.19 +0.2 3,024,057 - Pf6N2E2_2566 0.19 +0.7 3,024,080 + Pf6N2E2_2566 0.22 +0.3 3,024,081 - Pf6N2E2_2566 0.22 -0.5 3,024,081 - Pf6N2E2_2566 0.22 -1.6 3,024,081 - Pf6N2E2_2566 0.22 +0.4 3,024,198 + Pf6N2E2_2566 0.37 +1.3 3,024,198 + Pf6N2E2_2566 0.37 +0.7 3,024,198 + Pf6N2E2_2566 0.37 -1.3 3,024,198 + Pf6N2E2_2566 0.37 +1.3 3,024,199 - Pf6N2E2_2566 0.37 +1.6 3,024,521 + Pf6N2E2_2566 0.77 -0.6 3,024,560 + Pf6N2E2_2566 0.82 +2.3 3,024,560 + Pf6N2E2_2566 0.82 -1.6 3,024,741 + +1.5 3,024,741 + -2.4 3,024,750 + +1.6 3,024,752 + -0.0 3,024,753 - -2.6 3,024,753 - +3.4 3,025,169 - Pf6N2E2_2567 0.47 -1.6 3,025,169 - Pf6N2E2_2567 0.47 -2.1 3,025,177 + Pf6N2E2_2567 0.48 -3.3 3,025,177 + Pf6N2E2_2567 0.48 +0.0 3,025,178 - Pf6N2E2_2567 0.48 -1.4 3,025,178 - Pf6N2E2_2567 0.48 -1.7 3,025,189 + Pf6N2E2_2567 0.50 -2.2 3,025,189 + Pf6N2E2_2567 0.50 -0.0 3,025,189 + Pf6N2E2_2567 0.50 -2.4 3,025,500 + Pf6N2E2_2567 0.85 -0.9 3,025,501 - Pf6N2E2_2567 0.85 +0.5 3,025,501 - Pf6N2E2_2567 0.85 -2.0 3,025,501 - Pf6N2E2_2567 0.85 -0.9 3,025,531 - Pf6N2E2_2567 0.88 +2.3 3,025,531 - Pf6N2E2_2567 0.88 +0.1 3,025,531 - Pf6N2E2_2567 0.88 +1.1 3,025,561 + -2.1 3,025,561 + -1.5 3,025,575 + -0.6 3,025,818 + Pf6N2E2_2568 0.23 +2.4 3,025,818 + Pf6N2E2_2568 0.23 +1.0 3,025,819 - Pf6N2E2_2568 0.23 +0.7 3,025,819 - Pf6N2E2_2568 0.23 +0.1 3,025,819 - Pf6N2E2_2568 0.23 +0.2 3,025,819 - Pf6N2E2_2568 0.23 +0.7 3,025,819 - Pf6N2E2_2568 0.23 +0.3 3,025,819 - Pf6N2E2_2568 0.23 +0.1 3,025,886 + Pf6N2E2_2568 0.32 +0.0 3,025,886 + Pf6N2E2_2568 0.32 +2.1 3,025,887 - Pf6N2E2_2568 0.32 +0.3 3,025,887 - Pf6N2E2_2568 0.32 +3.0 3,025,992 + Pf6N2E2_2568 0.46 +0.9 3,026,070 + Pf6N2E2_2568 0.57 +0.5 3,026,108 + Pf6N2E2_2568 0.62 -2.0 3,026,108 + Pf6N2E2_2568 0.62 +1.2 3,026,109 - Pf6N2E2_2568 0.62 +0.8 3,026,328 + -1.9 3,026,329 - +0.2 3,026,329 - +2.4 3,026,415 + -3.5 3,026,415 + -1.3 3,026,484 - -0.2 3,026,484 - -2.7 3,026,484 - -0.3 3,026,484 - +0.2 3,026,607 - Pf6N2E2_2569 0.19 +0.5 3,026,631 + Pf6N2E2_2569 0.21 +2.2 3,026,631 + Pf6N2E2_2569 0.21 -0.8 3,026,631 + Pf6N2E2_2569 0.21 -1.2 3,026,631 + Pf6N2E2_2569 0.21 +1.0 3,026,631 + Pf6N2E2_2569 0.21 -0.7 3,026,632 - Pf6N2E2_2569 0.21 -0.4 3,026,632 - Pf6N2E2_2569 0.21 -0.5 3,026,632 - Pf6N2E2_2569 0.21 -2.5 3,026,632 - Pf6N2E2_2569 0.21 +0.6
Or see this region's nucleotide sequence