Experiment: DEANONOate 0.000625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2380 and Pf6N2E2_2381 are separated by 10 nucleotides Pf6N2E2_2381 and Pf6N2E2_2382 are separated by 197 nucleotides
Pf6N2E2_2380 - Nitrate reductase (EC 1.7.99.4) (from data) , at 2,817,700 to 2,820,417
_2380
Pf6N2E2_2381 - Uroporphyrinogen-III methyltransferase (EC 2.1.1.107), at 2,820,428 to 2,821,183
_2381
Pf6N2E2_2382 - Major porin and structural outer membrane porin OprF, at 2,821,381 to 2,822,415
_2382
Position (kb)
2820
2821
2822 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2819.730 kb on + strand, within Pf6N2E2_2380 at 2819.896 kb on + strand, within Pf6N2E2_2380 at 2819.896 kb on + strand, within Pf6N2E2_2380 at 2820.031 kb on + strand, within Pf6N2E2_2380 at 2820.072 kb on - strand, within Pf6N2E2_2380 at 2820.288 kb on + strand at 2820.288 kb on + strand at 2820.427 kb on + strand at 2820.428 kb on - strand at 2820.478 kb on - strand at 2820.478 kb on - strand at 2820.926 kb on + strand, within Pf6N2E2_2381 at 2820.926 kb on + strand, within Pf6N2E2_2381 at 2820.926 kb on + strand, within Pf6N2E2_2381 at 2820.926 kb on + strand, within Pf6N2E2_2381 at 2820.926 kb on + strand, within Pf6N2E2_2381 at 2820.926 kb on + strand, within Pf6N2E2_2381 at 2820.926 kb on + strand, within Pf6N2E2_2381 at 2820.927 kb on - strand, within Pf6N2E2_2381 at 2820.927 kb on - strand, within Pf6N2E2_2381 at 2820.927 kb on - strand, within Pf6N2E2_2381 at 2820.927 kb on - strand, within Pf6N2E2_2381 at 2820.927 kb on - strand, within Pf6N2E2_2381 at 2820.927 kb on - strand, within Pf6N2E2_2381 at 2820.927 kb on - strand, within Pf6N2E2_2381 at 2821.179 kb on + strand at 2821.179 kb on + strand at 2821.179 kb on + strand at 2821.180 kb on - strand at 2821.291 kb on + strand at 2821.291 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M remove 2,819,730 + Pf6N2E2_2380 0.75 +0.1 2,819,896 + Pf6N2E2_2380 0.81 +0.3 2,819,896 + Pf6N2E2_2380 0.81 +0.5 2,820,031 + Pf6N2E2_2380 0.86 -0.8 2,820,072 - Pf6N2E2_2380 0.87 -2.6 2,820,288 + -0.3 2,820,288 + -1.7 2,820,427 + -0.0 2,820,428 - -0.2 2,820,478 - +0.0 2,820,478 - -2.3 2,820,926 + Pf6N2E2_2381 0.66 -2.2 2,820,926 + Pf6N2E2_2381 0.66 -2.2 2,820,926 + Pf6N2E2_2381 0.66 -0.2 2,820,926 + Pf6N2E2_2381 0.66 -0.7 2,820,926 + Pf6N2E2_2381 0.66 -3.6 2,820,926 + Pf6N2E2_2381 0.66 -3.4 2,820,926 + Pf6N2E2_2381 0.66 +0.9 2,820,927 - Pf6N2E2_2381 0.66 -2.3 2,820,927 - Pf6N2E2_2381 0.66 -0.9 2,820,927 - Pf6N2E2_2381 0.66 -3.6 2,820,927 - Pf6N2E2_2381 0.66 -2.5 2,820,927 - Pf6N2E2_2381 0.66 -1.0 2,820,927 - Pf6N2E2_2381 0.66 -0.8 2,820,927 - Pf6N2E2_2381 0.66 -2.2 2,821,179 + -2.7 2,821,179 + +0.4 2,821,179 + +1.5 2,821,180 - -2.1 2,821,291 + -3.5 2,821,291 + -3.1
Or see this region's nucleotide sequence