Experiment: DEANONOate 0.000625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1893 and Pf6N2E2_1894 are separated by 701 nucleotides Pf6N2E2_1894 and Pf6N2E2_1895 are separated by 902 nucleotides
Pf6N2E2_1893 - hypothetical protein, at 2,243,609 to 2,244,097
_1893
Pf6N2E2_1894 - hypothetical protein, at 2,244,799 to 2,244,930
_1894
Pf6N2E2_1895 - PQQ-dependent oxidoreductase, gdhB family, at 2,245,833 to 2,246,951
_1895
Position (kb)
2244
2245 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2243.968 kb on + strand, within Pf6N2E2_1893 at 2243.969 kb on - strand, within Pf6N2E2_1893 at 2243.969 kb on - strand, within Pf6N2E2_1893 at 2243.969 kb on - strand, within Pf6N2E2_1893 at 2243.971 kb on + strand, within Pf6N2E2_1893 at 2244.194 kb on - strand at 2244.194 kb on - strand at 2244.194 kb on - strand at 2244.287 kb on + strand at 2244.288 kb on - strand at 2244.288 kb on - strand at 2244.288 kb on - strand at 2244.356 kb on - strand at 2244.356 kb on - strand at 2244.416 kb on - strand at 2244.470 kb on - strand at 2244.500 kb on + strand at 2244.500 kb on + strand at 2244.501 kb on - strand at 2244.501 kb on - strand at 2244.549 kb on + strand at 2244.565 kb on - strand at 2244.568 kb on + strand at 2244.568 kb on + strand at 2244.569 kb on - strand at 2244.613 kb on - strand at 2244.613 kb on - strand at 2244.702 kb on + strand at 2244.703 kb on - strand at 2244.703 kb on - strand at 2244.710 kb on - strand at 2244.721 kb on - strand at 2244.749 kb on + strand at 2244.749 kb on + strand at 2244.749 kb on + strand at 2244.749 kb on + strand at 2244.749 kb on + strand at 2244.763 kb on + strand at 2244.763 kb on + strand at 2244.807 kb on + strand at 2244.807 kb on + strand at 2244.807 kb on + strand at 2244.807 kb on + strand at 2244.808 kb on - strand at 2244.808 kb on - strand at 2244.810 kb on + strand at 2244.861 kb on + strand, within Pf6N2E2_1894 at 2244.895 kb on + strand, within Pf6N2E2_1894 at 2244.900 kb on + strand, within Pf6N2E2_1894 at 2244.900 kb on + strand, within Pf6N2E2_1894 at 2244.907 kb on + strand, within Pf6N2E2_1894 at 2244.907 kb on + strand, within Pf6N2E2_1894 at 2244.908 kb on - strand, within Pf6N2E2_1894 at 2244.908 kb on - strand, within Pf6N2E2_1894 at 2244.908 kb on - strand, within Pf6N2E2_1894 at 2244.918 kb on + strand at 2244.919 kb on - strand at 2244.919 kb on - strand at 2244.953 kb on + strand at 2244.953 kb on + strand at 2244.963 kb on + strand at 2244.963 kb on + strand at 2244.964 kb on - strand at 2244.967 kb on + strand at 2244.967 kb on + strand at 2245.032 kb on + strand at 2245.032 kb on + strand at 2245.033 kb on - strand at 2245.033 kb on - strand at 2245.058 kb on + strand at 2245.058 kb on + strand at 2245.059 kb on - strand at 2245.092 kb on - strand at 2245.189 kb on + strand at 2245.252 kb on + strand at 2245.421 kb on - strand at 2245.459 kb on + strand at 2245.459 kb on + strand at 2245.495 kb on - strand at 2245.516 kb on - strand at 2245.518 kb on + strand at 2245.564 kb on + strand at 2245.564 kb on + strand at 2245.565 kb on - strand at 2245.565 kb on - strand at 2245.565 kb on - strand at 2245.569 kb on - strand at 2245.885 kb on + strand at 2245.885 kb on + strand at 2245.885 kb on + strand at 2245.886 kb on - strand at 2245.886 kb on - strand at 2245.886 kb on - strand at 2245.886 kb on - strand at 2245.886 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M remove 2,243,968 + Pf6N2E2_1893 0.73 -0.4 2,243,969 - Pf6N2E2_1893 0.74 -0.7 2,243,969 - Pf6N2E2_1893 0.74 +0.2 2,243,969 - Pf6N2E2_1893 0.74 -1.4 2,243,971 + Pf6N2E2_1893 0.74 -1.9 2,244,194 - +0.7 2,244,194 - -1.3 2,244,194 - +1.2 2,244,287 + +1.1 2,244,288 - +1.4 2,244,288 - +0.9 2,244,288 - -3.2 2,244,356 - -2.0 2,244,356 - +0.7 2,244,416 - -0.4 2,244,470 - -1.9 2,244,500 + +1.6 2,244,500 + +1.6 2,244,501 - -0.1 2,244,501 - -2.1 2,244,549 + -2.1 2,244,565 - +1.0 2,244,568 + -0.4 2,244,568 + -1.4 2,244,569 - +1.9 2,244,613 - +0.4 2,244,613 - -0.2 2,244,702 + -0.7 2,244,703 - +1.1 2,244,703 - -1.4 2,244,710 - -2.6 2,244,721 - -0.2 2,244,749 + -0.1 2,244,749 + +1.8 2,244,749 + -0.5 2,244,749 + +1.8 2,244,749 + -0.7 2,244,763 + +0.9 2,244,763 + +1.1 2,244,807 + +0.5 2,244,807 + -0.4 2,244,807 + +1.6 2,244,807 + +0.2 2,244,808 - +1.5 2,244,808 - -1.2 2,244,810 + -2.9 2,244,861 + Pf6N2E2_1894 0.47 +0.4 2,244,895 + Pf6N2E2_1894 0.73 -1.3 2,244,900 + Pf6N2E2_1894 0.77 -3.8 2,244,900 + Pf6N2E2_1894 0.77 -0.4 2,244,907 + Pf6N2E2_1894 0.82 +1.8 2,244,907 + Pf6N2E2_1894 0.82 -0.8 2,244,908 - Pf6N2E2_1894 0.83 -1.5 2,244,908 - Pf6N2E2_1894 0.83 -1.7 2,244,908 - Pf6N2E2_1894 0.83 -1.6 2,244,918 + -1.0 2,244,919 - +3.0 2,244,919 - +0.7 2,244,953 + +0.6 2,244,953 + +0.4 2,244,963 + -0.3 2,244,963 + +1.1 2,244,964 - -0.2 2,244,967 + -3.0 2,244,967 + -1.7 2,245,032 + -2.4 2,245,032 + +1.5 2,245,033 - -0.4 2,245,033 - +0.5 2,245,058 + +1.1 2,245,058 + -0.1 2,245,059 - -0.2 2,245,092 - +2.1 2,245,189 + +2.5 2,245,252 + +1.1 2,245,421 - +1.4 2,245,459 + -1.2 2,245,459 + -2.7 2,245,495 - -0.3 2,245,516 - -1.6 2,245,518 + -1.0 2,245,564 + -1.1 2,245,564 + +1.3 2,245,565 - +1.7 2,245,565 - +0.5 2,245,565 - -1.4 2,245,569 - +0.0 2,245,885 + +1.3 2,245,885 + +1.8 2,245,885 + +0.1 2,245,886 - -0.7 2,245,886 - +0.8 2,245,886 - +0.6 2,245,886 - +1.5 2,245,886 - -2.0
Or see this region's nucleotide sequence