Experiment: DEANONOate 0.000625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1777 and Pf6N2E2_1778 overlap by 4 nucleotides Pf6N2E2_1778 and Pf6N2E2_1779 are separated by 75 nucleotides Pf6N2E2_1779 and Pf6N2E2_1780 are separated by 3 nucleotides
Pf6N2E2_1777 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 2,101,901 to 2,102,704
_1777
Pf6N2E2_1778 - Positive regulator of CheA protein activity (CheW), at 2,102,701 to 2,103,225
_1778
Pf6N2E2_1779 - Positive regulator of CheA protein activity (CheW), at 2,103,301 to 2,103,813
_1779
Pf6N2E2_1780 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 2,103,817 to 2,106,207
_1780
Position (kb)
2103
2104 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2102.362 kb on - strand, within Pf6N2E2_1777 at 2102.398 kb on + strand, within Pf6N2E2_1777 at 2102.398 kb on + strand, within Pf6N2E2_1777 at 2102.399 kb on - strand, within Pf6N2E2_1777 at 2102.399 kb on - strand, within Pf6N2E2_1777 at 2102.399 kb on - strand, within Pf6N2E2_1777 at 2102.403 kb on - strand, within Pf6N2E2_1777 at 2102.547 kb on + strand, within Pf6N2E2_1777 at 2102.550 kb on + strand, within Pf6N2E2_1777 at 2102.551 kb on - strand, within Pf6N2E2_1777 at 2102.551 kb on - strand, within Pf6N2E2_1777 at 2102.551 kb on - strand, within Pf6N2E2_1777 at 2102.559 kb on + strand, within Pf6N2E2_1777 at 2102.631 kb on - strand at 2102.786 kb on - strand, within Pf6N2E2_1778 at 2102.838 kb on + strand, within Pf6N2E2_1778 at 2102.838 kb on + strand, within Pf6N2E2_1778 at 2102.839 kb on - strand, within Pf6N2E2_1778 at 2102.973 kb on + strand, within Pf6N2E2_1778 at 2103.105 kb on - strand, within Pf6N2E2_1778 at 2103.174 kb on - strand at 2103.174 kb on - strand at 2103.237 kb on - strand at 2103.250 kb on - strand at 2103.279 kb on - strand at 2103.279 kb on - strand at 2103.279 kb on - strand at 2103.637 kb on - strand, within Pf6N2E2_1779 at 2103.703 kb on - strand, within Pf6N2E2_1779 at 2103.713 kb on + strand, within Pf6N2E2_1779 at 2103.714 kb on - strand, within Pf6N2E2_1779 at 2103.714 kb on - strand, within Pf6N2E2_1779 at 2103.730 kb on + strand, within Pf6N2E2_1779 at 2104.624 kb on - strand, within Pf6N2E2_1780 at 2104.624 kb on - strand, within Pf6N2E2_1780 at 2104.704 kb on - strand, within Pf6N2E2_1780 at 2104.704 kb on - strand, within Pf6N2E2_1780
Per-strain Table
Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M remove 2,102,362 - Pf6N2E2_1777 0.57 -0.7 2,102,398 + Pf6N2E2_1777 0.62 -1.0 2,102,398 + Pf6N2E2_1777 0.62 -0.4 2,102,399 - Pf6N2E2_1777 0.62 -3.6 2,102,399 - Pf6N2E2_1777 0.62 -0.8 2,102,399 - Pf6N2E2_1777 0.62 -3.1 2,102,403 - Pf6N2E2_1777 0.62 -0.2 2,102,547 + Pf6N2E2_1777 0.80 +1.8 2,102,550 + Pf6N2E2_1777 0.81 +0.8 2,102,551 - Pf6N2E2_1777 0.81 +2.2 2,102,551 - Pf6N2E2_1777 0.81 +1.3 2,102,551 - Pf6N2E2_1777 0.81 -1.5 2,102,559 + Pf6N2E2_1777 0.82 -2.1 2,102,631 - -0.2 2,102,786 - Pf6N2E2_1778 0.16 -0.1 2,102,838 + Pf6N2E2_1778 0.26 +1.5 2,102,838 + Pf6N2E2_1778 0.26 +1.2 2,102,839 - Pf6N2E2_1778 0.26 -0.8 2,102,973 + Pf6N2E2_1778 0.52 -0.9 2,103,105 - Pf6N2E2_1778 0.77 +1.4 2,103,174 - +0.0 2,103,174 - +2.7 2,103,237 - -0.5 2,103,250 - -2.1 2,103,279 - +1.2 2,103,279 - +0.9 2,103,279 - -2.8 2,103,637 - Pf6N2E2_1779 0.65 +0.2 2,103,703 - Pf6N2E2_1779 0.78 -1.0 2,103,713 + Pf6N2E2_1779 0.80 -1.3 2,103,714 - Pf6N2E2_1779 0.81 +0.0 2,103,714 - Pf6N2E2_1779 0.81 -2.2 2,103,730 + Pf6N2E2_1779 0.84 -2.9 2,104,624 - Pf6N2E2_1780 0.34 +0.8 2,104,624 - Pf6N2E2_1780 0.34 +0.5 2,104,704 - Pf6N2E2_1780 0.37 +0.9 2,104,704 - Pf6N2E2_1780 0.37 +0.7
Or see this region's nucleotide sequence