Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1051

Experiment: DEANONOate 0.000625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1050 and Pf6N2E2_1051 are separated by 221 nucleotidesPf6N2E2_1051 and Pf6N2E2_1052 are separated by 741 nucleotides Pf6N2E2_1050 - Enoyl-[acyl-carrier-protein] reductase [NADPH] (EC 1.3.1.10), at 1,223,916 to 1,224,467 _1050 Pf6N2E2_1051 - Probable NADH-dependent flavin oxidoreductase yqiG (EC 1.-.-.-), at 1,224,689 to 1,226,044 _1051 Pf6N2E2_1052 - hypothetical protein, at 1,226,786 to 1,226,926 _1052 Position (kb) 1224 1225 1226 1227Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1223.803 kb on + strandat 1223.804 kb on - strandat 1223.836 kb on + strandat 1223.836 kb on + strandat 1223.836 kb on + strandat 1223.837 kb on - strandat 1223.951 kb on + strandat 1223.951 kb on + strandat 1223.951 kb on + strandat 1223.952 kb on - strandat 1223.952 kb on - strandat 1223.952 kb on - strandat 1223.952 kb on - strandat 1223.952 kb on - strandat 1223.961 kb on + strandat 1223.962 kb on - strandat 1223.969 kb on - strandat 1224.067 kb on + strand, within Pf6N2E2_1050at 1224.068 kb on - strand, within Pf6N2E2_1050at 1224.068 kb on - strand, within Pf6N2E2_1050at 1224.116 kb on + strand, within Pf6N2E2_1050at 1224.156 kb on + strand, within Pf6N2E2_1050at 1224.156 kb on + strand, within Pf6N2E2_1050at 1224.156 kb on + strand, within Pf6N2E2_1050at 1224.157 kb on - strand, within Pf6N2E2_1050at 1224.188 kb on + strand, within Pf6N2E2_1050at 1224.188 kb on + strand, within Pf6N2E2_1050at 1224.189 kb on - strand, within Pf6N2E2_1050at 1224.196 kb on + strand, within Pf6N2E2_1050at 1224.196 kb on + strand, within Pf6N2E2_1050at 1224.338 kb on + strand, within Pf6N2E2_1050at 1224.338 kb on + strand, within Pf6N2E2_1050at 1224.338 kb on + strand, within Pf6N2E2_1050at 1224.339 kb on - strand, within Pf6N2E2_1050at 1224.339 kb on - strand, within Pf6N2E2_1050at 1224.339 kb on - strand, within Pf6N2E2_1050at 1224.339 kb on - strand, within Pf6N2E2_1050at 1224.339 kb on - strand, within Pf6N2E2_1050at 1224.339 kb on - strand, within Pf6N2E2_1050at 1224.339 kb on - strand, within Pf6N2E2_1050at 1224.350 kb on + strand, within Pf6N2E2_1050at 1224.351 kb on - strand, within Pf6N2E2_1050at 1224.351 kb on - strand, within Pf6N2E2_1050at 1224.453 kb on + strandat 1224.455 kb on + strandat 1224.456 kb on - strandat 1224.456 kb on - strandat 1224.456 kb on - strandat 1224.468 kb on + strandat 1224.487 kb on + strandat 1224.531 kb on - strandat 1224.531 kb on - strandat 1224.531 kb on - strandat 1224.532 kb on + strandat 1224.542 kb on + strandat 1224.543 kb on - strandat 1224.543 kb on - strandat 1224.543 kb on - strandat 1224.551 kb on + strandat 1224.596 kb on - strandat 1224.686 kb on - strandat 1224.701 kb on - strandat 1224.701 kb on - strandat 1224.701 kb on - strandat 1224.777 kb on + strandat 1224.777 kb on + strandat 1224.778 kb on - strandat 1224.778 kb on - strandat 1224.817 kb on + strandat 1224.817 kb on + strandat 1224.832 kb on + strand, within Pf6N2E2_1051at 1224.832 kb on + strand, within Pf6N2E2_1051at 1224.832 kb on + strand, within Pf6N2E2_1051at 1224.832 kb on + strand, within Pf6N2E2_1051at 1224.833 kb on - strand, within Pf6N2E2_1051at 1224.833 kb on - strand, within Pf6N2E2_1051at 1224.833 kb on - strand, within Pf6N2E2_1051at 1224.833 kb on - strand, within Pf6N2E2_1051at 1224.841 kb on + strand, within Pf6N2E2_1051at 1224.841 kb on + strand, within Pf6N2E2_1051at 1224.841 kb on + strand, within Pf6N2E2_1051at 1224.841 kb on + strand, within Pf6N2E2_1051at 1224.842 kb on - strand, within Pf6N2E2_1051at 1224.843 kb on + strand, within Pf6N2E2_1051at 1224.844 kb on - strand, within Pf6N2E2_1051at 1224.844 kb on - strand, within Pf6N2E2_1051at 1224.844 kb on - strandat 1224.844 kb on - strand, within Pf6N2E2_1051at 1224.844 kb on - strand, within Pf6N2E2_1051at 1224.849 kb on + strand, within Pf6N2E2_1051at 1224.849 kb on + strand, within Pf6N2E2_1051at 1224.850 kb on - strand, within Pf6N2E2_1051at 1224.850 kb on - strand, within Pf6N2E2_1051at 1224.850 kb on - strand, within Pf6N2E2_1051at 1224.850 kb on - strand, within Pf6N2E2_1051at 1224.919 kb on - strand, within Pf6N2E2_1051at 1224.919 kb on - strand, within Pf6N2E2_1051at 1224.919 kb on - strand, within Pf6N2E2_1051at 1224.919 kb on - strand, within Pf6N2E2_1051at 1224.953 kb on + strand, within Pf6N2E2_1051at 1224.954 kb on - strand, within Pf6N2E2_1051at 1225.133 kb on + strand, within Pf6N2E2_1051at 1225.133 kb on + strand, within Pf6N2E2_1051at 1225.134 kb on - strand, within Pf6N2E2_1051at 1225.137 kb on + strand, within Pf6N2E2_1051at 1225.137 kb on + strandat 1225.137 kb on + strand, within Pf6N2E2_1051at 1225.137 kb on + strand, within Pf6N2E2_1051at 1225.137 kb on + strand, within Pf6N2E2_1051at 1225.137 kb on + strand, within Pf6N2E2_1051at 1225.137 kb on + strand, within Pf6N2E2_1051at 1225.138 kb on - strand, within Pf6N2E2_1051at 1225.381 kb on - strand, within Pf6N2E2_1051at 1225.381 kb on - strand, within Pf6N2E2_1051at 1225.381 kb on - strand, within Pf6N2E2_1051at 1225.381 kb on - strand, within Pf6N2E2_1051at 1225.432 kb on - strand, within Pf6N2E2_1051at 1225.448 kb on + strand, within Pf6N2E2_1051at 1225.469 kb on - strand, within Pf6N2E2_1051at 1225.469 kb on - strand, within Pf6N2E2_1051at 1225.543 kb on + strand, within Pf6N2E2_1051at 1225.566 kb on + strand, within Pf6N2E2_1051at 1225.567 kb on - strand, within Pf6N2E2_1051at 1225.567 kb on - strand, within Pf6N2E2_1051at 1225.571 kb on - strand, within Pf6N2E2_1051at 1225.571 kb on - strand, within Pf6N2E2_1051at 1225.685 kb on + strand, within Pf6N2E2_1051at 1225.686 kb on - strand, within Pf6N2E2_1051at 1225.731 kb on - strand, within Pf6N2E2_1051at 1225.964 kb on + strandat 1226.112 kb on + strandat 1226.112 kb on + strandat 1226.112 kb on + strandat 1226.161 kb on + strandat 1226.162 kb on - strandat 1226.167 kb on + strandat 1226.292 kb on + strandat 1226.302 kb on + strandat 1226.363 kb on - strandat 1226.368 kb on + strandat 1226.368 kb on + strandat 1226.368 kb on + strandat 1226.444 kb on + strandat 1226.449 kb on + strandat 1226.449 kb on + strandat 1226.449 kb on + strandat 1226.506 kb on - strandat 1226.510 kb on - strandat 1226.510 kb on - strandat 1226.543 kb on + strandat 1226.645 kb on + strandat 1226.668 kb on + strandat 1226.668 kb on + strandat 1226.694 kb on + strandat 1226.792 kb on + strandat 1226.792 kb on + strandat 1226.957 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M
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1,223,803 + +2.0
1,223,804 - -1.4
1,223,836 + -0.4
1,223,836 + +0.4
1,223,836 + -0.4
1,223,837 - -0.4
1,223,951 + -0.9
1,223,951 + +0.3
1,223,951 + -0.9
1,223,952 - +1.2
1,223,952 - +0.2
1,223,952 - +0.6
1,223,952 - +1.6
1,223,952 - +1.7
1,223,961 + +0.7
1,223,962 - +0.2
1,223,969 - -2.9
1,224,067 + Pf6N2E2_1050 0.27 -0.6
1,224,068 - Pf6N2E2_1050 0.28 -3.0
1,224,068 - Pf6N2E2_1050 0.28 -1.8
1,224,116 + Pf6N2E2_1050 0.36 +1.3
1,224,156 + Pf6N2E2_1050 0.43 -2.7
1,224,156 + Pf6N2E2_1050 0.43 +1.3
1,224,156 + Pf6N2E2_1050 0.43 +1.0
1,224,157 - Pf6N2E2_1050 0.44 -1.4
1,224,188 + Pf6N2E2_1050 0.49 -0.5
1,224,188 + Pf6N2E2_1050 0.49 -0.8
1,224,189 - Pf6N2E2_1050 0.49 +0.9
1,224,196 + Pf6N2E2_1050 0.51 -0.5
1,224,196 + Pf6N2E2_1050 0.51 -2.6
1,224,338 + Pf6N2E2_1050 0.76 -0.0
1,224,338 + Pf6N2E2_1050 0.76 +2.2
1,224,338 + Pf6N2E2_1050 0.76 -0.3
1,224,339 - Pf6N2E2_1050 0.77 +2.6
1,224,339 - Pf6N2E2_1050 0.77 -1.5
1,224,339 - Pf6N2E2_1050 0.77 -0.7
1,224,339 - Pf6N2E2_1050 0.77 +1.2
1,224,339 - Pf6N2E2_1050 0.77 -1.3
1,224,339 - Pf6N2E2_1050 0.77 +0.4
1,224,339 - Pf6N2E2_1050 0.77 -0.4
1,224,350 + Pf6N2E2_1050 0.79 +1.4
1,224,351 - Pf6N2E2_1050 0.79 +0.1
1,224,351 - Pf6N2E2_1050 0.79 +0.8
1,224,453 + +0.9
1,224,455 + -0.6
1,224,456 - -0.5
1,224,456 - +1.3
1,224,456 - +1.0
1,224,468 + +0.4
1,224,487 + +1.4
1,224,531 - -1.4
1,224,531 - -2.7
1,224,531 - +0.6
1,224,532 + +0.5
1,224,542 + -0.4
1,224,543 - -0.2
1,224,543 - +1.0
1,224,543 - +2.4
1,224,551 + +0.8
1,224,596 - +0.1
1,224,686 - +1.5
1,224,701 - +1.0
1,224,701 - +0.2
1,224,701 - -1.2
1,224,777 + -2.0
1,224,777 + +1.1
1,224,778 - -1.4
1,224,778 - +0.6
1,224,817 + +0.6
1,224,817 + -1.9
1,224,832 + Pf6N2E2_1051 0.11 +0.0
1,224,832 + Pf6N2E2_1051 0.11 +0.9
1,224,832 + Pf6N2E2_1051 0.11 -0.1
1,224,832 + Pf6N2E2_1051 0.11 -1.4
1,224,833 - Pf6N2E2_1051 0.11 -0.7
1,224,833 - Pf6N2E2_1051 0.11 -0.2
1,224,833 - Pf6N2E2_1051 0.11 -1.2
1,224,833 - Pf6N2E2_1051 0.11 -0.6
1,224,841 + Pf6N2E2_1051 0.11 -2.1
1,224,841 + Pf6N2E2_1051 0.11 +1.1
1,224,841 + Pf6N2E2_1051 0.11 -0.6
1,224,841 + Pf6N2E2_1051 0.11 +1.9
1,224,842 - Pf6N2E2_1051 0.11 +0.3
1,224,843 + Pf6N2E2_1051 0.11 +1.0
1,224,844 - Pf6N2E2_1051 0.11 -0.6
1,224,844 - Pf6N2E2_1051 0.11 +3.1
1,224,844 - -0.2
1,224,844 - Pf6N2E2_1051 0.11 -2.1
1,224,844 - Pf6N2E2_1051 0.11 +1.0
1,224,849 + Pf6N2E2_1051 0.12 +0.4
1,224,849 + Pf6N2E2_1051 0.12 +2.5
1,224,850 - Pf6N2E2_1051 0.12 -1.8
1,224,850 - Pf6N2E2_1051 0.12 +0.0
1,224,850 - Pf6N2E2_1051 0.12 -2.6
1,224,850 - Pf6N2E2_1051 0.12 -1.2
1,224,919 - Pf6N2E2_1051 0.17 +2.3
1,224,919 - Pf6N2E2_1051 0.17 +0.3
1,224,919 - Pf6N2E2_1051 0.17 -1.0
1,224,919 - Pf6N2E2_1051 0.17 -0.5
1,224,953 + Pf6N2E2_1051 0.19 +0.7
1,224,954 - Pf6N2E2_1051 0.20 +0.4
1,225,133 + Pf6N2E2_1051 0.33 -0.8
1,225,133 + Pf6N2E2_1051 0.33 -1.6
1,225,134 - Pf6N2E2_1051 0.33 -2.4
1,225,137 + Pf6N2E2_1051 0.33 +0.6
1,225,137 + +2.4
1,225,137 + Pf6N2E2_1051 0.33 -2.3
1,225,137 + Pf6N2E2_1051 0.33 -1.4
1,225,137 + Pf6N2E2_1051 0.33 -0.2
1,225,137 + Pf6N2E2_1051 0.33 +0.8
1,225,137 + Pf6N2E2_1051 0.33 +0.2
1,225,138 - Pf6N2E2_1051 0.33 -0.5
1,225,381 - Pf6N2E2_1051 0.51 +0.0
1,225,381 - Pf6N2E2_1051 0.51 -0.3
1,225,381 - Pf6N2E2_1051 0.51 -0.6
1,225,381 - Pf6N2E2_1051 0.51 -1.1
1,225,432 - Pf6N2E2_1051 0.55 +0.7
1,225,448 + Pf6N2E2_1051 0.56 +0.4
1,225,469 - Pf6N2E2_1051 0.58 -0.3
1,225,469 - Pf6N2E2_1051 0.58 -2.7
1,225,543 + Pf6N2E2_1051 0.63 +0.6
1,225,566 + Pf6N2E2_1051 0.65 +0.1
1,225,567 - Pf6N2E2_1051 0.65 -0.8
1,225,567 - Pf6N2E2_1051 0.65 -1.7
1,225,571 - Pf6N2E2_1051 0.65 -1.8
1,225,571 - Pf6N2E2_1051 0.65 +1.2
1,225,685 + Pf6N2E2_1051 0.73 -0.6
1,225,686 - Pf6N2E2_1051 0.74 -0.5
1,225,731 - Pf6N2E2_1051 0.77 +2.2
1,225,964 + +0.9
1,226,112 + +0.1
1,226,112 + +0.4
1,226,112 + -0.9
1,226,161 + -0.6
1,226,162 - +0.6
1,226,167 + -0.4
1,226,292 + -3.2
1,226,302 + +1.1
1,226,363 - +2.5
1,226,368 + +0.8
1,226,368 + -0.3
1,226,368 + +0.1
1,226,444 + -0.2
1,226,449 + -3.1
1,226,449 + +0.4
1,226,449 + -0.9
1,226,506 - -1.7
1,226,510 - -3.4
1,226,510 - -1.2
1,226,543 + -0.7
1,226,645 + +1.6
1,226,668 + -0.4
1,226,668 + +0.3
1,226,694 + -0.2
1,226,792 + +1.6
1,226,792 + -0.0
1,226,957 + +1.7

Or see this region's nucleotide sequence