Experiment: DEANONOate 0.000625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6041 and Pf6N2E2_6042 are separated by 127 nucleotides Pf6N2E2_6042 and Pf6N2E2_6043 are separated by 723 nucleotides Pf6N2E2_6043 and Pf6N2E2_6044 are separated by 499 nucleotides
Pf6N2E2_6041 - hypothetical protein, at 6,861,169 to 6,861,792
_6041
Pf6N2E2_6042 - hypothetical protein, at 6,861,920 to 6,862,060
_6042
Pf6N2E2_6043 - hypothetical protein, at 6,862,784 to 6,863,062
_6043
Pf6N2E2_6044 - Sensor histidine kinase/response regulator, at 6,863,562 to 6,865,652
_6044
Position (kb)
6862
6863
6864 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 6861.790 kb on + strand at 6861.921 kb on + strand at 6861.921 kb on + strand at 6861.921 kb on + strand at 6861.921 kb on + strand at 6861.921 kb on + strand at 6861.923 kb on + strand at 6861.923 kb on + strand at 6861.923 kb on + strand at 6861.923 kb on + strand at 6862.118 kb on - strand at 6862.167 kb on - strand at 6862.167 kb on - strand at 6862.201 kb on + strand at 6862.216 kb on - strand at 6862.216 kb on - strand at 6862.261 kb on - strand at 6862.261 kb on - strand at 6862.261 kb on - strand at 6862.299 kb on + strand at 6862.299 kb on + strand at 6862.299 kb on + strand at 6862.440 kb on - strand at 6862.542 kb on + strand at 6862.542 kb on + strand at 6862.542 kb on + strand at 6862.543 kb on - strand at 6862.543 kb on - strand at 6862.544 kb on + strand at 6862.544 kb on + strand at 6862.544 kb on + strand at 6862.545 kb on - strand at 6862.545 kb on - strand at 6862.551 kb on + strand at 6862.551 kb on + strand at 6862.577 kb on + strand at 6862.644 kb on + strand at 6862.645 kb on - strand at 6862.785 kb on + strand at 6863.062 kb on + strand at 6863.063 kb on - strand at 6863.063 kb on - strand at 6863.063 kb on - strand at 6863.063 kb on - strand at 6863.066 kb on + strand at 6863.066 kb on + strand at 6863.067 kb on - strand at 6863.067 kb on - strand at 6863.136 kb on + strand at 6863.137 kb on - strand at 6863.195 kb on - strand at 6863.199 kb on - strand at 6863.232 kb on + strand at 6863.232 kb on + strand at 6863.233 kb on - strand at 6863.233 kb on - strand at 6863.239 kb on + strand at 6863.240 kb on - strand at 6863.240 kb on - strand at 6863.240 kb on - strand at 6863.240 kb on - strand at 6863.240 kb on - strand at 6863.249 kb on + strand at 6863.262 kb on + strand at 6863.263 kb on - strand at 6863.289 kb on + strand at 6863.289 kb on + strand at 6863.303 kb on - strand at 6863.307 kb on + strand at 6863.308 kb on - strand at 6863.390 kb on + strand at 6863.413 kb on + strand at 6863.413 kb on + strand at 6863.413 kb on + strand at 6863.414 kb on - strand at 6863.643 kb on + strand at 6863.643 kb on + strand at 6863.643 kb on + strand at 6863.644 kb on - strand at 6863.644 kb on - strand at 6863.644 kb on - strand at 6863.777 kb on + strand, within Pf6N2E2_6044 at 6863.778 kb on - strand, within Pf6N2E2_6044 at 6863.779 kb on + strand, within Pf6N2E2_6044 at 6863.829 kb on + strand, within Pf6N2E2_6044 at 6863.829 kb on + strand, within Pf6N2E2_6044 at 6863.829 kb on + strand, within Pf6N2E2_6044 at 6863.829 kb on + strand, within Pf6N2E2_6044 at 6863.829 kb on + strand, within Pf6N2E2_6044 at 6863.830 kb on - strand, within Pf6N2E2_6044 at 6863.830 kb on - strand, within Pf6N2E2_6044 at 6863.845 kb on - strand, within Pf6N2E2_6044 at 6863.845 kb on - strand, within Pf6N2E2_6044 at 6864.048 kb on + strand, within Pf6N2E2_6044
Per-strain Table
Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M remove 6,861,790 + -1.3 6,861,921 + +0.4 6,861,921 + +1.3 6,861,921 + +0.4 6,861,921 + -0.2 6,861,921 + +0.3 6,861,923 + +0.0 6,861,923 + +1.4 6,861,923 + -2.2 6,861,923 + +0.3 6,862,118 - +1.6 6,862,167 - +1.9 6,862,167 - +0.6 6,862,201 + -0.2 6,862,216 - +0.4 6,862,216 - +0.5 6,862,261 - -1.3 6,862,261 - +2.6 6,862,261 - -2.6 6,862,299 + -1.2 6,862,299 + -0.9 6,862,299 + +1.4 6,862,440 - -0.4 6,862,542 + -0.9 6,862,542 + -2.9 6,862,542 + +2.1 6,862,543 - +1.1 6,862,543 - -0.4 6,862,544 + +1.3 6,862,544 + -3.0 6,862,544 + +0.6 6,862,545 - -2.8 6,862,545 - +1.2 6,862,551 + +1.0 6,862,551 + -0.2 6,862,577 + -0.1 6,862,644 + -3.3 6,862,645 - +1.2 6,862,785 + -0.1 6,863,062 + +0.3 6,863,063 - +0.4 6,863,063 - +1.3 6,863,063 - +1.4 6,863,063 - +0.9 6,863,066 + +0.1 6,863,066 + -1.8 6,863,067 - -0.9 6,863,067 - -2.1 6,863,136 + -2.3 6,863,137 - +1.0 6,863,195 - -0.6 6,863,199 - -1.9 6,863,232 + -0.4 6,863,232 + -2.1 6,863,233 - -2.7 6,863,233 - -0.1 6,863,239 + +0.8 6,863,240 - +0.1 6,863,240 - +1.6 6,863,240 - +0.8 6,863,240 - -0.5 6,863,240 - +0.7 6,863,249 + +1.5 6,863,262 + +0.6 6,863,263 - +1.5 6,863,289 + +2.8 6,863,289 + +1.4 6,863,303 - +0.4 6,863,307 + +1.2 6,863,308 - +0.8 6,863,390 + +1.6 6,863,413 + +1.6 6,863,413 + +1.8 6,863,413 + +0.2 6,863,414 - +0.5 6,863,643 + -1.0 6,863,643 + -1.8 6,863,643 + -1.6 6,863,644 - +0.1 6,863,644 - -0.3 6,863,644 - -1.1 6,863,777 + Pf6N2E2_6044 0.10 -2.0 6,863,778 - Pf6N2E2_6044 0.10 -0.7 6,863,779 + Pf6N2E2_6044 0.10 -1.2 6,863,829 + Pf6N2E2_6044 0.13 -1.2 6,863,829 + Pf6N2E2_6044 0.13 -0.7 6,863,829 + Pf6N2E2_6044 0.13 -3.7 6,863,829 + Pf6N2E2_6044 0.13 +0.1 6,863,829 + Pf6N2E2_6044 0.13 -1.3 6,863,830 - Pf6N2E2_6044 0.13 -3.9 6,863,830 - Pf6N2E2_6044 0.13 -2.3 6,863,845 - Pf6N2E2_6044 0.14 -0.7 6,863,845 - Pf6N2E2_6044 0.14 +0.6 6,864,048 + Pf6N2E2_6044 0.23 +0.9
Or see this region's nucleotide sequence