Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_584

Experiment: DEANONOate 0.000625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_583 and Pf6N2E2_584 are separated by 4 nucleotidesPf6N2E2_584 and Pf6N2E2_585 overlap by 4 nucleotides Pf6N2E2_583 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 658,464 to 659,537 _583 Pf6N2E2_584 - ABC transporter, periplasmic substrate-binding protein, at 659,542 to 661,395 _584 Pf6N2E2_585 - Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1), at 661,392 to 663,206 _585 Position (kb) 659 660 661 662Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 658.741 kb on + strand, within Pf6N2E2_583at 658.741 kb on + strand, within Pf6N2E2_583at 658.742 kb on - strand, within Pf6N2E2_583at 658.789 kb on + strand, within Pf6N2E2_583at 658.790 kb on - strand, within Pf6N2E2_583at 658.790 kb on - strand, within Pf6N2E2_583at 658.790 kb on - strand, within Pf6N2E2_583at 658.790 kb on - strand, within Pf6N2E2_583at 658.894 kb on + strand, within Pf6N2E2_583at 658.894 kb on + strand, within Pf6N2E2_583at 658.894 kb on + strand, within Pf6N2E2_583at 658.972 kb on + strand, within Pf6N2E2_583at 658.972 kb on + strand, within Pf6N2E2_583at 658.973 kb on - strand, within Pf6N2E2_583at 659.122 kb on + strand, within Pf6N2E2_583at 659.122 kb on + strand, within Pf6N2E2_583at 659.122 kb on + strand, within Pf6N2E2_583at 659.122 kb on + strand, within Pf6N2E2_583at 659.123 kb on - strand, within Pf6N2E2_583at 659.226 kb on + strand, within Pf6N2E2_583at 659.227 kb on - strand, within Pf6N2E2_583at 659.227 kb on - strand, within Pf6N2E2_583at 659.236 kb on + strand, within Pf6N2E2_583at 659.236 kb on + strand, within Pf6N2E2_583at 659.287 kb on + strand, within Pf6N2E2_583at 659.287 kb on + strand, within Pf6N2E2_583at 659.288 kb on - strand, within Pf6N2E2_583at 659.288 kb on - strand, within Pf6N2E2_583at 659.291 kb on + strand, within Pf6N2E2_583at 659.291 kb on + strand, within Pf6N2E2_583at 659.291 kb on + strand, within Pf6N2E2_583at 659.291 kb on + strand, within Pf6N2E2_583at 659.291 kb on + strand, within Pf6N2E2_583at 659.292 kb on - strand, within Pf6N2E2_583at 659.292 kb on - strand, within Pf6N2E2_583at 659.292 kb on - strand, within Pf6N2E2_583at 659.525 kb on + strandat 659.525 kb on + strandat 659.525 kb on + strandat 659.526 kb on - strandat 659.527 kb on + strandat 659.528 kb on - strandat 659.593 kb on + strandat 659.593 kb on + strandat 659.593 kb on + strandat 659.593 kb on + strandat 659.594 kb on - strandat 659.594 kb on - strandat 659.651 kb on + strandat 659.652 kb on - strandat 659.732 kb on + strand, within Pf6N2E2_584at 659.732 kb on + strand, within Pf6N2E2_584at 659.733 kb on - strand, within Pf6N2E2_584at 659.733 kb on - strand, within Pf6N2E2_584at 659.733 kb on - strandat 659.733 kb on - strand, within Pf6N2E2_584at 659.733 kb on - strand, within Pf6N2E2_584at 659.733 kb on - strand, within Pf6N2E2_584at 659.736 kb on - strand, within Pf6N2E2_584at 659.776 kb on + strand, within Pf6N2E2_584at 660.364 kb on + strand, within Pf6N2E2_584at 660.364 kb on + strand, within Pf6N2E2_584at 660.365 kb on - strand, within Pf6N2E2_584at 660.365 kb on - strand, within Pf6N2E2_584at 660.365 kb on - strand, within Pf6N2E2_584at 660.421 kb on + strand, within Pf6N2E2_584at 660.452 kb on + strand, within Pf6N2E2_584at 660.453 kb on - strand, within Pf6N2E2_584at 660.536 kb on + strand, within Pf6N2E2_584at 660.536 kb on + strand, within Pf6N2E2_584at 660.629 kb on + strand, within Pf6N2E2_584at 660.629 kb on + strand, within Pf6N2E2_584at 660.629 kb on + strand, within Pf6N2E2_584at 660.630 kb on - strand, within Pf6N2E2_584at 660.630 kb on - strand, within Pf6N2E2_584at 660.630 kb on - strand, within Pf6N2E2_584at 660.630 kb on - strand, within Pf6N2E2_584at 660.644 kb on - strand, within Pf6N2E2_584at 660.654 kb on + strand, within Pf6N2E2_584at 660.692 kb on + strand, within Pf6N2E2_584at 660.692 kb on + strand, within Pf6N2E2_584at 660.692 kb on + strand, within Pf6N2E2_584at 660.692 kb on + strand, within Pf6N2E2_584at 660.693 kb on - strand, within Pf6N2E2_584at 660.693 kb on - strand, within Pf6N2E2_584at 660.700 kb on + strand, within Pf6N2E2_584at 660.861 kb on + strand, within Pf6N2E2_584at 660.861 kb on + strand, within Pf6N2E2_584at 660.929 kb on + strand, within Pf6N2E2_584at 660.933 kb on - strand, within Pf6N2E2_584at 661.041 kb on - strand, within Pf6N2E2_584at 661.041 kb on - strand, within Pf6N2E2_584at 661.097 kb on + strand, within Pf6N2E2_584at 661.142 kb on + strand, within Pf6N2E2_584at 661.304 kb on + strandat 661.304 kb on + strandat 661.305 kb on - strandat 661.444 kb on + strandat 661.444 kb on + strandat 661.444 kb on + strandat 661.445 kb on - strandat 661.481 kb on - strandat 661.495 kb on + strandat 661.495 kb on + strandat 661.496 kb on - strandat 661.496 kb on - strandat 661.504 kb on + strandat 661.522 kb on + strandat 661.523 kb on - strandat 661.643 kb on - strand, within Pf6N2E2_585at 661.643 kb on - strand, within Pf6N2E2_585at 661.685 kb on - strand, within Pf6N2E2_585at 661.771 kb on + strand, within Pf6N2E2_585at 661.772 kb on - strand, within Pf6N2E2_585at 661.772 kb on - strand, within Pf6N2E2_585at 661.834 kb on + strand, within Pf6N2E2_585at 661.834 kb on + strand, within Pf6N2E2_585at 661.835 kb on - strand, within Pf6N2E2_585at 661.835 kb on - strand, within Pf6N2E2_585at 661.835 kb on - strand, within Pf6N2E2_585at 661.835 kb on - strand, within Pf6N2E2_585at 662.122 kb on + strand, within Pf6N2E2_585at 662.123 kb on - strand, within Pf6N2E2_585at 662.123 kb on - strand, within Pf6N2E2_585at 662.140 kb on + strand, within Pf6N2E2_585at 662.141 kb on - strand, within Pf6N2E2_585at 662.141 kb on - strand, within Pf6N2E2_585at 662.205 kb on + strand, within Pf6N2E2_585at 662.206 kb on - strand, within Pf6N2E2_585at 662.295 kb on + strand, within Pf6N2E2_585at 662.295 kb on + strand, within Pf6N2E2_585at 662.296 kb on - strand, within Pf6N2E2_585at 662.296 kb on - strand, within Pf6N2E2_585at 662.362 kb on + strand, within Pf6N2E2_585at 662.362 kb on + strand, within Pf6N2E2_585at 662.362 kb on + strand, within Pf6N2E2_585

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Per-strain Table

Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M
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658,741 + Pf6N2E2_583 0.26 +0.6
658,741 + Pf6N2E2_583 0.26 -2.3
658,742 - Pf6N2E2_583 0.26 +0.0
658,789 + Pf6N2E2_583 0.30 +0.6
658,790 - Pf6N2E2_583 0.30 +1.2
658,790 - Pf6N2E2_583 0.30 +0.6
658,790 - Pf6N2E2_583 0.30 -1.0
658,790 - Pf6N2E2_583 0.30 -0.1
658,894 + Pf6N2E2_583 0.40 +0.9
658,894 + Pf6N2E2_583 0.40 -3.1
658,894 + Pf6N2E2_583 0.40 +1.6
658,972 + Pf6N2E2_583 0.47 -0.2
658,972 + Pf6N2E2_583 0.47 +1.6
658,973 - Pf6N2E2_583 0.47 +1.4
659,122 + Pf6N2E2_583 0.61 -0.5
659,122 + Pf6N2E2_583 0.61 +0.4
659,122 + Pf6N2E2_583 0.61 +0.7
659,122 + Pf6N2E2_583 0.61 +0.6
659,123 - Pf6N2E2_583 0.61 +0.2
659,226 + Pf6N2E2_583 0.71 -0.5
659,227 - Pf6N2E2_583 0.71 +0.8
659,227 - Pf6N2E2_583 0.71 +0.8
659,236 + Pf6N2E2_583 0.72 -0.6
659,236 + Pf6N2E2_583 0.72 +0.2
659,287 + Pf6N2E2_583 0.77 +0.5
659,287 + Pf6N2E2_583 0.77 +0.6
659,288 - Pf6N2E2_583 0.77 +0.7
659,288 - Pf6N2E2_583 0.77 -0.8
659,291 + Pf6N2E2_583 0.77 +0.8
659,291 + Pf6N2E2_583 0.77 +1.2
659,291 + Pf6N2E2_583 0.77 +2.1
659,291 + Pf6N2E2_583 0.77 +1.2
659,291 + Pf6N2E2_583 0.77 +0.4
659,292 - Pf6N2E2_583 0.77 -1.3
659,292 - Pf6N2E2_583 0.77 +0.6
659,292 - Pf6N2E2_583 0.77 -0.6
659,525 + -1.4
659,525 + -0.4
659,525 + +2.0
659,526 - +1.3
659,527 + +1.2
659,528 - -0.3
659,593 + -0.3
659,593 + +1.5
659,593 + +0.7
659,593 + +1.5
659,594 - +1.4
659,594 - -0.3
659,651 + +1.3
659,652 - -1.9
659,732 + Pf6N2E2_584 0.10 +1.4
659,732 + Pf6N2E2_584 0.10 +1.6
659,733 - Pf6N2E2_584 0.10 +0.3
659,733 - Pf6N2E2_584 0.10 -1.3
659,733 - +2.8
659,733 - Pf6N2E2_584 0.10 +2.0
659,733 - Pf6N2E2_584 0.10 +0.2
659,733 - Pf6N2E2_584 0.10 +0.6
659,736 - Pf6N2E2_584 0.10 +0.2
659,776 + Pf6N2E2_584 0.13 +2.3
660,364 + Pf6N2E2_584 0.44 -1.3
660,364 + Pf6N2E2_584 0.44 +1.0
660,365 - Pf6N2E2_584 0.44 +1.4
660,365 - Pf6N2E2_584 0.44 +0.7
660,365 - Pf6N2E2_584 0.44 +1.4
660,421 + Pf6N2E2_584 0.47 +1.5
660,452 + Pf6N2E2_584 0.49 +0.2
660,453 - Pf6N2E2_584 0.49 -0.0
660,536 + Pf6N2E2_584 0.54 +1.2
660,536 + Pf6N2E2_584 0.54 +2.1
660,629 + Pf6N2E2_584 0.59 -1.0
660,629 + Pf6N2E2_584 0.59 +0.4
660,629 + Pf6N2E2_584 0.59 +0.9
660,630 - Pf6N2E2_584 0.59 -0.1
660,630 - Pf6N2E2_584 0.59 +0.2
660,630 - Pf6N2E2_584 0.59 -0.2
660,630 - Pf6N2E2_584 0.59 -0.3
660,644 - Pf6N2E2_584 0.59 -0.3
660,654 + Pf6N2E2_584 0.60 +1.8
660,692 + Pf6N2E2_584 0.62 +0.4
660,692 + Pf6N2E2_584 0.62 +0.5
660,692 + Pf6N2E2_584 0.62 +0.2
660,692 + Pf6N2E2_584 0.62 +0.9
660,693 - Pf6N2E2_584 0.62 -0.3
660,693 - Pf6N2E2_584 0.62 -0.0
660,700 + Pf6N2E2_584 0.62 +0.3
660,861 + Pf6N2E2_584 0.71 +0.9
660,861 + Pf6N2E2_584 0.71 +1.2
660,929 + Pf6N2E2_584 0.75 +0.3
660,933 - Pf6N2E2_584 0.75 -0.1
661,041 - Pf6N2E2_584 0.81 -2.6
661,041 - Pf6N2E2_584 0.81 -1.2
661,097 + Pf6N2E2_584 0.84 +2.0
661,142 + Pf6N2E2_584 0.86 +0.3
661,304 + +0.7
661,304 + +0.0
661,305 - +0.7
661,444 + +1.2
661,444 + +0.6
661,444 + +2.4
661,445 - +1.9
661,481 - -1.5
661,495 + +0.4
661,495 + -1.2
661,496 - +0.3
661,496 - +1.2
661,504 + +0.6
661,522 + -0.9
661,523 - -3.8
661,643 - Pf6N2E2_585 0.14 -1.1
661,643 - Pf6N2E2_585 0.14 -1.8
661,685 - Pf6N2E2_585 0.16 +0.3
661,771 + Pf6N2E2_585 0.21 +1.9
661,772 - Pf6N2E2_585 0.21 +1.3
661,772 - Pf6N2E2_585 0.21 -0.2
661,834 + Pf6N2E2_585 0.24 +2.0
661,834 + Pf6N2E2_585 0.24 +1.1
661,835 - Pf6N2E2_585 0.24 -1.0
661,835 - Pf6N2E2_585 0.24 +0.7
661,835 - Pf6N2E2_585 0.24 -3.4
661,835 - Pf6N2E2_585 0.24 +1.4
662,122 + Pf6N2E2_585 0.40 -0.4
662,123 - Pf6N2E2_585 0.40 -1.3
662,123 - Pf6N2E2_585 0.40 -2.2
662,140 + Pf6N2E2_585 0.41 +2.2
662,141 - Pf6N2E2_585 0.41 -2.3
662,141 - Pf6N2E2_585 0.41 +2.7
662,205 + Pf6N2E2_585 0.45 -1.1
662,206 - Pf6N2E2_585 0.45 -2.4
662,295 + Pf6N2E2_585 0.50 +0.3
662,295 + Pf6N2E2_585 0.50 -0.9
662,296 - Pf6N2E2_585 0.50 +0.0
662,296 - Pf6N2E2_585 0.50 -0.8
662,362 + Pf6N2E2_585 0.53 -1.2
662,362 + Pf6N2E2_585 0.53 -1.3
662,362 + Pf6N2E2_585 0.53 +1.3

Or see this region's nucleotide sequence