Experiment: DEANONOate 0.000625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5502 and Pf6N2E2_5503 overlap by 14 nucleotides Pf6N2E2_5503 and Pf6N2E2_5504 overlap by 4 nucleotides Pf6N2E2_5504 and Pf6N2E2_5505 are separated by 12 nucleotides Pf6N2E2_5505 and Pf6N2E2_5506 are separated by 119 nucleotides
Pf6N2E2_5502 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 6,319,949 to 6,321,493
_5502
Pf6N2E2_5503 - FIG01248689: hypothetical protein, at 6,321,480 to 6,322,454
_5503
Pf6N2E2_5504 - INTEGRAL MEMBRANE PROTEIN (Rhomboid family), at 6,322,451 to 6,323,176
_5504
Pf6N2E2_5505 - hypothetical protein, at 6,323,189 to 6,323,314
_5505
Pf6N2E2_5506 - Exodeoxyribonuclease I (EC 3.1.11.1), at 6,323,434 to 6,324,870
_5506
Position (kb)
6321
6322
6323 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6320.818 kb on - strand, within Pf6N2E2_5502 at 6320.841 kb on + strand, within Pf6N2E2_5502 at 6320.841 kb on + strand, within Pf6N2E2_5502 at 6320.842 kb on - strand, within Pf6N2E2_5502 at 6320.842 kb on - strand, within Pf6N2E2_5502 at 6320.979 kb on + strand, within Pf6N2E2_5502 at 6320.979 kb on + strand, within Pf6N2E2_5502 at 6320.980 kb on - strand, within Pf6N2E2_5502 at 6320.980 kb on - strand, within Pf6N2E2_5502 at 6320.980 kb on - strand, within Pf6N2E2_5502 at 6320.980 kb on - strand, within Pf6N2E2_5502 at 6321.107 kb on - strand, within Pf6N2E2_5502 at 6321.267 kb on + strand, within Pf6N2E2_5502 at 6321.267 kb on + strand, within Pf6N2E2_5502 at 6321.268 kb on - strand, within Pf6N2E2_5502 at 6321.268 kb on - strand, within Pf6N2E2_5502 at 6321.268 kb on - strand, within Pf6N2E2_5502 at 6321.360 kb on + strand at 6321.360 kb on + strand at 6321.360 kb on + strand at 6321.520 kb on + strand at 6321.520 kb on + strand at 6321.520 kb on + strand at 6321.521 kb on - strand at 6321.521 kb on - strand at 6321.559 kb on + strand at 6321.560 kb on - strand at 6321.560 kb on - strand at 6321.651 kb on + strand, within Pf6N2E2_5503 at 6321.652 kb on - strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.067 kb on - strand, within Pf6N2E2_5503 at 6322.067 kb on - strand, within Pf6N2E2_5503 at 6322.067 kb on - strand, within Pf6N2E2_5503 at 6322.087 kb on + strand, within Pf6N2E2_5503 at 6322.088 kb on - strand, within Pf6N2E2_5503 at 6322.088 kb on - strand, within Pf6N2E2_5503 at 6322.232 kb on - strand, within Pf6N2E2_5503 at 6322.336 kb on + strand, within Pf6N2E2_5503 at 6322.337 kb on - strand, within Pf6N2E2_5503 at 6322.337 kb on - strand, within Pf6N2E2_5503 at 6322.337 kb on - strand, within Pf6N2E2_5503 at 6322.337 kb on - strand, within Pf6N2E2_5503 at 6322.923 kb on + strand, within Pf6N2E2_5504 at 6322.923 kb on + strand, within Pf6N2E2_5504 at 6322.923 kb on + strand, within Pf6N2E2_5504 at 6322.923 kb on + strand, within Pf6N2E2_5504 at 6322.924 kb on - strand, within Pf6N2E2_5504 at 6322.924 kb on - strand, within Pf6N2E2_5504 at 6322.924 kb on - strand, within Pf6N2E2_5504 at 6322.924 kb on - strand, within Pf6N2E2_5504 at 6322.924 kb on - strand, within Pf6N2E2_5504 at 6322.924 kb on - strand, within Pf6N2E2_5504 at 6323.025 kb on - strand, within Pf6N2E2_5504 at 6323.226 kb on + strand, within Pf6N2E2_5505 at 6323.226 kb on + strand, within Pf6N2E2_5505 at 6323.251 kb on + strand, within Pf6N2E2_5505 at 6323.310 kb on + strand at 6323.310 kb on + strand at 6323.310 kb on + strand at 6323.311 kb on - strand at 6323.311 kb on - strand at 6323.401 kb on - strand at 6323.401 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M remove 6,320,818 - Pf6N2E2_5502 0.56 -0.8 6,320,841 + Pf6N2E2_5502 0.58 -1.2 6,320,841 + Pf6N2E2_5502 0.58 -1.2 6,320,842 - Pf6N2E2_5502 0.58 +0.3 6,320,842 - Pf6N2E2_5502 0.58 -0.1 6,320,979 + Pf6N2E2_5502 0.67 +0.2 6,320,979 + Pf6N2E2_5502 0.67 -0.5 6,320,980 - Pf6N2E2_5502 0.67 +1.2 6,320,980 - Pf6N2E2_5502 0.67 -0.6 6,320,980 - Pf6N2E2_5502 0.67 +0.2 6,320,980 - Pf6N2E2_5502 0.67 +0.3 6,321,107 - Pf6N2E2_5502 0.75 +0.5 6,321,267 + Pf6N2E2_5502 0.85 +0.4 6,321,267 + Pf6N2E2_5502 0.85 +1.6 6,321,268 - Pf6N2E2_5502 0.85 +0.6 6,321,268 - Pf6N2E2_5502 0.85 +1.2 6,321,268 - Pf6N2E2_5502 0.85 +0.6 6,321,360 + +1.6 6,321,360 + -0.8 6,321,360 + -0.6 6,321,520 + +0.2 6,321,520 + -0.8 6,321,520 + -1.0 6,321,521 - -0.0 6,321,521 - +1.4 6,321,559 + +0.7 6,321,560 - +0.0 6,321,560 - +1.6 6,321,651 + Pf6N2E2_5503 0.18 +0.7 6,321,652 - Pf6N2E2_5503 0.18 -0.6 6,321,946 + Pf6N2E2_5503 0.48 -0.6 6,321,946 + Pf6N2E2_5503 0.48 +1.5 6,321,946 + Pf6N2E2_5503 0.48 +0.1 6,321,946 + Pf6N2E2_5503 0.48 -1.1 6,321,946 + Pf6N2E2_5503 0.48 +1.4 6,321,946 + Pf6N2E2_5503 0.48 +0.1 6,321,946 + Pf6N2E2_5503 0.48 +0.6 6,321,947 - Pf6N2E2_5503 0.48 +0.8 6,321,947 - Pf6N2E2_5503 0.48 +0.4 6,321,947 - Pf6N2E2_5503 0.48 +1.4 6,321,947 - Pf6N2E2_5503 0.48 -0.6 6,321,947 - Pf6N2E2_5503 0.48 +1.5 6,321,947 - Pf6N2E2_5503 0.48 -0.8 6,321,947 - Pf6N2E2_5503 0.48 -2.6 6,321,947 - Pf6N2E2_5503 0.48 +1.4 6,321,947 - Pf6N2E2_5503 0.48 -1.7 6,321,947 - Pf6N2E2_5503 0.48 +0.3 6,321,947 - Pf6N2E2_5503 0.48 -0.0 6,321,947 - Pf6N2E2_5503 0.48 +1.3 6,322,021 + Pf6N2E2_5503 0.55 -0.5 6,322,021 + Pf6N2E2_5503 0.55 +0.5 6,322,021 + Pf6N2E2_5503 0.55 +0.5 6,322,021 + Pf6N2E2_5503 0.55 -1.2 6,322,021 + Pf6N2E2_5503 0.55 -0.0 6,322,021 + Pf6N2E2_5503 0.55 +1.9 6,322,021 + Pf6N2E2_5503 0.55 +0.2 6,322,021 + Pf6N2E2_5503 0.55 +1.0 6,322,021 + Pf6N2E2_5503 0.55 -0.5 6,322,021 + Pf6N2E2_5503 0.55 +0.2 6,322,021 + Pf6N2E2_5503 0.55 +1.4 6,322,021 + Pf6N2E2_5503 0.55 +1.0 6,322,021 + Pf6N2E2_5503 0.55 +0.4 6,322,021 + Pf6N2E2_5503 0.55 -0.7 6,322,021 + Pf6N2E2_5503 0.55 +1.6 6,322,021 + Pf6N2E2_5503 0.55 -0.3 6,322,021 + Pf6N2E2_5503 0.55 -0.3 6,322,022 - Pf6N2E2_5503 0.56 -1.0 6,322,022 - Pf6N2E2_5503 0.56 -1.5 6,322,022 - Pf6N2E2_5503 0.56 +1.6 6,322,022 - Pf6N2E2_5503 0.56 -0.3 6,322,022 - Pf6N2E2_5503 0.56 +1.3 6,322,022 - Pf6N2E2_5503 0.56 +1.8 6,322,022 - Pf6N2E2_5503 0.56 +1.1 6,322,022 - Pf6N2E2_5503 0.56 +0.7 6,322,022 - Pf6N2E2_5503 0.56 +1.2 6,322,022 - Pf6N2E2_5503 0.56 +1.8 6,322,022 - Pf6N2E2_5503 0.56 +2.2 6,322,022 - Pf6N2E2_5503 0.56 +0.7 6,322,022 - Pf6N2E2_5503 0.56 +1.7 6,322,022 - Pf6N2E2_5503 0.56 +0.5 6,322,067 - Pf6N2E2_5503 0.60 -1.3 6,322,067 - Pf6N2E2_5503 0.60 +1.1 6,322,067 - Pf6N2E2_5503 0.60 +0.6 6,322,087 + Pf6N2E2_5503 0.62 -0.9 6,322,088 - Pf6N2E2_5503 0.62 +0.4 6,322,088 - Pf6N2E2_5503 0.62 +1.2 6,322,232 - Pf6N2E2_5503 0.77 -1.9 6,322,336 + Pf6N2E2_5503 0.88 +1.6 6,322,337 - Pf6N2E2_5503 0.88 -0.3 6,322,337 - Pf6N2E2_5503 0.88 +2.3 6,322,337 - Pf6N2E2_5503 0.88 -0.0 6,322,337 - Pf6N2E2_5503 0.88 -1.3 6,322,923 + Pf6N2E2_5504 0.65 +1.6 6,322,923 + Pf6N2E2_5504 0.65 -2.6 6,322,923 + Pf6N2E2_5504 0.65 -2.1 6,322,923 + Pf6N2E2_5504 0.65 -0.7 6,322,924 - Pf6N2E2_5504 0.65 +0.1 6,322,924 - Pf6N2E2_5504 0.65 +1.3 6,322,924 - Pf6N2E2_5504 0.65 +1.9 6,322,924 - Pf6N2E2_5504 0.65 -1.0 6,322,924 - Pf6N2E2_5504 0.65 -2.8 6,322,924 - Pf6N2E2_5504 0.65 +0.5 6,323,025 - Pf6N2E2_5504 0.79 +0.7 6,323,226 + Pf6N2E2_5505 0.29 -0.8 6,323,226 + Pf6N2E2_5505 0.29 +1.0 6,323,251 + Pf6N2E2_5505 0.49 +0.4 6,323,310 + +0.4 6,323,310 + -0.2 6,323,310 + -0.5 6,323,311 - +1.8 6,323,311 - +1.3 6,323,401 - +1.4 6,323,401 - -0.2
Or see this region's nucleotide sequence