Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_537

Experiment: DEANONOate 0.000625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_536 and Pf6N2E2_537 overlap by 4 nucleotidesPf6N2E2_537 and Pf6N2E2_538 overlap by 1 nucleotides Pf6N2E2_536 - Na(+) H(+) antiporter subunit D, at 602,844 to 604,529 _536 Pf6N2E2_537 - Na(+) H(+) antiporter subunit C, at 604,526 to 604,870 _537 Pf6N2E2_538 - Na(+) H(+) antiporter subunit A; Na(+) H(+) antiporter subunit B, at 604,870 to 607,794 _538 Position (kb) 604 605Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 603.688 kb on + strand, within Pf6N2E2_536at 603.688 kb on + strand, within Pf6N2E2_536at 603.689 kb on - strand, within Pf6N2E2_536at 603.748 kb on + strand, within Pf6N2E2_536at 603.808 kb on + strand, within Pf6N2E2_536at 603.808 kb on + strand, within Pf6N2E2_536at 603.808 kb on + strand, within Pf6N2E2_536at 603.970 kb on + strand, within Pf6N2E2_536at 603.970 kb on + strand, within Pf6N2E2_536at 603.971 kb on - strand, within Pf6N2E2_536at 603.971 kb on - strand, within Pf6N2E2_536at 603.971 kb on - strand, within Pf6N2E2_536at 603.971 kb on - strand, within Pf6N2E2_536at 604.027 kb on + strand, within Pf6N2E2_536at 604.027 kb on + strand, within Pf6N2E2_536at 604.028 kb on - strand, within Pf6N2E2_536at 604.028 kb on - strand, within Pf6N2E2_536at 604.028 kb on - strand, within Pf6N2E2_536at 604.028 kb on - strand, within Pf6N2E2_536at 604.098 kb on + strand, within Pf6N2E2_536at 604.099 kb on - strand, within Pf6N2E2_536at 604.099 kb on - strand, within Pf6N2E2_536at 604.150 kb on + strand, within Pf6N2E2_536at 604.330 kb on + strand, within Pf6N2E2_536at 604.372 kb on + strandat 604.372 kb on + strandat 604.373 kb on - strandat 604.668 kb on + strand, within Pf6N2E2_537at 604.668 kb on + strand, within Pf6N2E2_537at 604.668 kb on + strand, within Pf6N2E2_537at 604.668 kb on + strand, within Pf6N2E2_537at 604.669 kb on - strand, within Pf6N2E2_537at 604.669 kb on - strand, within Pf6N2E2_537at 604.761 kb on + strand, within Pf6N2E2_537at 604.769 kb on + strand, within Pf6N2E2_537at 604.769 kb on + strand, within Pf6N2E2_537at 604.770 kb on - strand, within Pf6N2E2_537at 604.838 kb on + strandat 604.839 kb on - strandat 604.923 kb on + strandat 604.991 kb on + strandat 605.201 kb on + strand, within Pf6N2E2_538at 605.201 kb on + strand, within Pf6N2E2_538at 605.201 kb on + strand, within Pf6N2E2_538at 605.201 kb on + strand, within Pf6N2E2_538at 605.201 kb on + strand, within Pf6N2E2_538at 605.201 kb on + strand, within Pf6N2E2_538at 605.201 kb on + strand, within Pf6N2E2_538at 605.202 kb on - strand, within Pf6N2E2_538at 605.202 kb on - strand, within Pf6N2E2_538at 605.202 kb on - strand, within Pf6N2E2_538at 605.282 kb on + strand, within Pf6N2E2_538at 605.282 kb on + strand, within Pf6N2E2_538at 605.283 kb on - strand, within Pf6N2E2_538at 605.335 kb on + strand, within Pf6N2E2_538at 605.597 kb on + strand, within Pf6N2E2_538at 605.597 kb on + strand, within Pf6N2E2_538at 605.598 kb on - strand, within Pf6N2E2_538at 605.598 kb on - strand, within Pf6N2E2_538at 605.643 kb on - strand, within Pf6N2E2_538

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Per-strain Table

Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M
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603,688 + Pf6N2E2_536 0.50 -3.0
603,688 + Pf6N2E2_536 0.50 +0.2
603,689 - Pf6N2E2_536 0.50 -0.6
603,748 + Pf6N2E2_536 0.54 -0.3
603,808 + Pf6N2E2_536 0.57 -1.1
603,808 + Pf6N2E2_536 0.57 -0.5
603,808 + Pf6N2E2_536 0.57 -1.1
603,970 + Pf6N2E2_536 0.67 -0.1
603,970 + Pf6N2E2_536 0.67 -1.3
603,971 - Pf6N2E2_536 0.67 +0.0
603,971 - Pf6N2E2_536 0.67 -4.5
603,971 - Pf6N2E2_536 0.67 -1.1
603,971 - Pf6N2E2_536 0.67 -2.1
604,027 + Pf6N2E2_536 0.70 -3.8
604,027 + Pf6N2E2_536 0.70 +1.8
604,028 - Pf6N2E2_536 0.70 +0.2
604,028 - Pf6N2E2_536 0.70 -0.5
604,028 - Pf6N2E2_536 0.70 -0.8
604,028 - Pf6N2E2_536 0.70 -3.0
604,098 + Pf6N2E2_536 0.74 -0.4
604,099 - Pf6N2E2_536 0.74 +0.5
604,099 - Pf6N2E2_536 0.74 +0.2
604,150 + Pf6N2E2_536 0.77 -0.5
604,330 + Pf6N2E2_536 0.88 -2.2
604,372 + -0.1
604,372 + -3.2
604,373 - -0.3
604,668 + Pf6N2E2_537 0.41 +0.8
604,668 + Pf6N2E2_537 0.41 -4.0
604,668 + Pf6N2E2_537 0.41 +0.4
604,668 + Pf6N2E2_537 0.41 -0.7
604,669 - Pf6N2E2_537 0.41 -1.9
604,669 - Pf6N2E2_537 0.41 -3.1
604,761 + Pf6N2E2_537 0.68 +0.5
604,769 + Pf6N2E2_537 0.70 -0.8
604,769 + Pf6N2E2_537 0.70 -2.6
604,770 - Pf6N2E2_537 0.71 +0.1
604,838 + -0.6
604,839 - -3.1
604,923 + +1.1
604,991 + -1.3
605,201 + Pf6N2E2_538 0.11 -2.3
605,201 + Pf6N2E2_538 0.11 -1.0
605,201 + Pf6N2E2_538 0.11 +0.3
605,201 + Pf6N2E2_538 0.11 +1.5
605,201 + Pf6N2E2_538 0.11 -2.0
605,201 + Pf6N2E2_538 0.11 +0.3
605,201 + Pf6N2E2_538 0.11 -3.2
605,202 - Pf6N2E2_538 0.11 -1.0
605,202 - Pf6N2E2_538 0.11 -2.8
605,202 - Pf6N2E2_538 0.11 +0.8
605,282 + Pf6N2E2_538 0.14 -0.5
605,282 + Pf6N2E2_538 0.14 -0.4
605,283 - Pf6N2E2_538 0.14 -3.7
605,335 + Pf6N2E2_538 0.16 -1.4
605,597 + Pf6N2E2_538 0.25 -0.9
605,597 + Pf6N2E2_538 0.25 +1.0
605,598 - Pf6N2E2_538 0.25 -0.6
605,598 - Pf6N2E2_538 0.25 +0.9
605,643 - Pf6N2E2_538 0.26 +1.6

Or see this region's nucleotide sequence