Experiment: DEANONOate 0.000625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4981 and Pf6N2E2_4982 are separated by 362 nucleotides Pf6N2E2_4982 and Pf6N2E2_4983 are separated by 8 nucleotides Pf6N2E2_4983 and Pf6N2E2_4984 overlap by 8 nucleotides
Pf6N2E2_4981 - Nitrogen regulation protein NR(I), at 5,747,068 to 5,748,975
_4981
Pf6N2E2_4982 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-), at 5,749,338 to 5,750,687
_4982
Pf6N2E2_4983 - 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-), at 5,750,696 to 5,751,331
_4983
Pf6N2E2_4984 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 5,751,324 to 5,751,608
_4984
Position (kb)
5749
5750
5751 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5748.538 kb on + strand, within Pf6N2E2_4981 at 5748.538 kb on + strand, within Pf6N2E2_4981 at 5748.538 kb on + strand, within Pf6N2E2_4981 at 5748.538 kb on + strand, within Pf6N2E2_4981 at 5748.538 kb on + strand, within Pf6N2E2_4981 at 5748.539 kb on - strand, within Pf6N2E2_4981 at 5748.539 kb on - strand, within Pf6N2E2_4981 at 5748.539 kb on - strand, within Pf6N2E2_4981 at 5748.539 kb on - strand, within Pf6N2E2_4981 at 5748.539 kb on - strand, within Pf6N2E2_4981 at 5748.717 kb on + strand, within Pf6N2E2_4981 at 5748.717 kb on + strand, within Pf6N2E2_4981 at 5748.717 kb on + strand, within Pf6N2E2_4981 at 5748.717 kb on + strand, within Pf6N2E2_4981 at 5748.718 kb on - strand, within Pf6N2E2_4981 at 5748.930 kb on + strand at 5748.978 kb on + strand at 5748.978 kb on + strand at 5748.978 kb on + strand at 5748.979 kb on - strand at 5748.979 kb on - strand at 5748.979 kb on - strand at 5749.147 kb on + strand at 5749.147 kb on + strand at 5749.147 kb on + strand at 5749.147 kb on + strand at 5749.147 kb on + strand at 5749.148 kb on - strand at 5749.148 kb on - strand at 5749.148 kb on - strand at 5749.148 kb on - strand at 5749.249 kb on + strand at 5749.249 kb on + strand at 5749.250 kb on - strand at 5749.250 kb on - strand at 5749.250 kb on - strand at 5749.250 kb on - strand at 5749.250 kb on - strand at 5749.250 kb on - strand at 5749.250 kb on - strand at 5749.250 kb on - strand at 5749.268 kb on + strand at 5749.268 kb on + strand at 5749.268 kb on + strand at 5749.268 kb on + strand at 5749.268 kb on + strand at 5749.269 kb on - strand at 5749.269 kb on - strand at 5749.269 kb on - strand at 5749.269 kb on - strand at 5749.269 kb on - strand at 5749.269 kb on - strand at 5749.269 kb on - strand at 5749.303 kb on + strand at 5749.325 kb on + strand at 5749.349 kb on + strand at 5749.349 kb on + strand at 5749.349 kb on + strand at 5749.575 kb on + strand, within Pf6N2E2_4982 at 5749.575 kb on + strand, within Pf6N2E2_4982 at 5749.575 kb on + strand, within Pf6N2E2_4982 at 5749.599 kb on + strand, within Pf6N2E2_4982 at 5749.599 kb on + strand, within Pf6N2E2_4982 at 5750.174 kb on + strand, within Pf6N2E2_4982 at 5750.312 kb on + strand, within Pf6N2E2_4982 at 5750.312 kb on + strand, within Pf6N2E2_4982 at 5750.312 kb on + strand, within Pf6N2E2_4982 at 5750.312 kb on + strand, within Pf6N2E2_4982 at 5750.312 kb on + strand, within Pf6N2E2_4982 at 5750.312 kb on + strand, within Pf6N2E2_4982 at 5750.316 kb on + strand, within Pf6N2E2_4982 at 5750.316 kb on + strand, within Pf6N2E2_4982 at 5750.316 kb on + strand, within Pf6N2E2_4982 at 5750.579 kb on + strand at 5751.329 kb on + strand at 5751.329 kb on + strand at 5751.330 kb on - strand at 5751.330 kb on - strand at 5751.330 kb on - strand at 5751.330 kb on - strand at 5751.420 kb on + strand, within Pf6N2E2_4984 at 5751.445 kb on - strand, within Pf6N2E2_4984 at 5751.445 kb on - strand, within Pf6N2E2_4984 at 5751.445 kb on - strand, within Pf6N2E2_4984 at 5751.606 kb on + strand at 5751.634 kb on + strand at 5751.634 kb on + strand at 5751.634 kb on + strand at 5751.634 kb on + strand at 5751.635 kb on - strand at 5751.635 kb on - strand at 5751.635 kb on - strand at 5751.635 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M remove 5,748,538 + Pf6N2E2_4981 0.77 +0.4 5,748,538 + Pf6N2E2_4981 0.77 +1.0 5,748,538 + Pf6N2E2_4981 0.77 -1.6 5,748,538 + Pf6N2E2_4981 0.77 +1.2 5,748,538 + Pf6N2E2_4981 0.77 +0.7 5,748,539 - Pf6N2E2_4981 0.77 -2.0 5,748,539 - Pf6N2E2_4981 0.77 +0.6 5,748,539 - Pf6N2E2_4981 0.77 +0.7 5,748,539 - Pf6N2E2_4981 0.77 -1.0 5,748,539 - Pf6N2E2_4981 0.77 -0.5 5,748,717 + Pf6N2E2_4981 0.86 -0.6 5,748,717 + Pf6N2E2_4981 0.86 +1.5 5,748,717 + Pf6N2E2_4981 0.86 +0.2 5,748,717 + Pf6N2E2_4981 0.86 +0.9 5,748,718 - Pf6N2E2_4981 0.86 +0.4 5,748,930 + +0.7 5,748,978 + +2.6 5,748,978 + -2.8 5,748,978 + +0.3 5,748,979 - -1.3 5,748,979 - -0.8 5,748,979 - -0.9 5,749,147 + -0.3 5,749,147 + +0.7 5,749,147 + -0.9 5,749,147 + -2.9 5,749,147 + -1.1 5,749,148 - -1.3 5,749,148 - +0.5 5,749,148 - -3.6 5,749,148 - +0.9 5,749,249 + -0.8 5,749,249 + -0.9 5,749,250 - -2.3 5,749,250 - -3.6 5,749,250 - -0.3 5,749,250 - -0.7 5,749,250 - +0.0 5,749,250 - +0.7 5,749,250 - -1.2 5,749,250 - -0.3 5,749,268 + -0.8 5,749,268 + +0.4 5,749,268 + -1.9 5,749,268 + -1.8 5,749,268 + -0.1 5,749,269 - +0.5 5,749,269 - -0.2 5,749,269 - +0.7 5,749,269 - -0.9 5,749,269 - -0.2 5,749,269 - +1.2 5,749,269 - -0.5 5,749,303 + -0.2 5,749,325 + +1.3 5,749,349 + -2.6 5,749,349 + -0.3 5,749,349 + -0.4 5,749,575 + Pf6N2E2_4982 0.18 -3.2 5,749,575 + Pf6N2E2_4982 0.18 -3.4 5,749,575 + Pf6N2E2_4982 0.18 -3.2 5,749,599 + Pf6N2E2_4982 0.19 +0.5 5,749,599 + Pf6N2E2_4982 0.19 +0.9 5,750,174 + Pf6N2E2_4982 0.62 -2.3 5,750,312 + Pf6N2E2_4982 0.72 -0.5 5,750,312 + Pf6N2E2_4982 0.72 -0.3 5,750,312 + Pf6N2E2_4982 0.72 -1.5 5,750,312 + Pf6N2E2_4982 0.72 -1.1 5,750,312 + Pf6N2E2_4982 0.72 -3.0 5,750,312 + Pf6N2E2_4982 0.72 -2.8 5,750,316 + Pf6N2E2_4982 0.72 -1.4 5,750,316 + Pf6N2E2_4982 0.72 -0.5 5,750,316 + Pf6N2E2_4982 0.72 +0.3 5,750,579 + -0.2 5,751,329 + +1.6 5,751,329 + +1.3 5,751,330 - -1.1 5,751,330 - -0.4 5,751,330 - -0.5 5,751,330 - +0.1 5,751,420 + Pf6N2E2_4984 0.34 -0.1 5,751,445 - Pf6N2E2_4984 0.42 +1.1 5,751,445 - Pf6N2E2_4984 0.42 +1.1 5,751,445 - Pf6N2E2_4984 0.42 -3.5 5,751,606 + +0.5 5,751,634 + -2.2 5,751,634 + -1.2 5,751,634 + -1.8 5,751,634 + +1.3 5,751,635 - +0.6 5,751,635 - +0.7 5,751,635 - +0.1 5,751,635 - -1.1
Or see this region's nucleotide sequence