Experiment: DEANONOate 0.000625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4941 and Pf6N2E2_4942 are separated by 369 nucleotides Pf6N2E2_4942 and Pf6N2E2_4943 are separated by 22 nucleotides Pf6N2E2_4943 and Pf6N2E2_4944 are separated by 265 nucleotides
Pf6N2E2_4941 - FIG00638718: hypothetical protein, at 5,698,002 to 5,698,832
_4941
Pf6N2E2_4942 - FIG006163: hypothetical protein, at 5,699,202 to 5,699,783
_4942
Pf6N2E2_4943 - PspA/IM30 family protein, at 5,699,806 to 5,700,504
_4943
Pf6N2E2_4944 - Putative potassium channel protein, at 5,700,770 to 5,701,804
_4944
Position (kb)
5699
5700 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 5698.203 kb on - strand, within Pf6N2E2_4941 at 5698.358 kb on - strand, within Pf6N2E2_4941 at 5698.358 kb on - strand, within Pf6N2E2_4941 at 5698.358 kb on - strand, within Pf6N2E2_4941 at 5698.358 kb on - strand, within Pf6N2E2_4941 at 5698.358 kb on - strand, within Pf6N2E2_4941 at 5698.615 kb on - strand, within Pf6N2E2_4941 at 5698.615 kb on - strand, within Pf6N2E2_4941 at 5698.623 kb on + strand, within Pf6N2E2_4941 at 5698.623 kb on + strand, within Pf6N2E2_4941 at 5698.623 kb on + strand, within Pf6N2E2_4941 at 5698.623 kb on + strand, within Pf6N2E2_4941 at 5698.623 kb on + strand, within Pf6N2E2_4941 at 5698.623 kb on + strand, within Pf6N2E2_4941 at 5698.623 kb on + strand, within Pf6N2E2_4941 at 5698.623 kb on + strand, within Pf6N2E2_4941 at 5698.623 kb on + strand, within Pf6N2E2_4941 at 5698.624 kb on - strand, within Pf6N2E2_4941 at 5698.624 kb on - strand, within Pf6N2E2_4941 at 5698.624 kb on - strand, within Pf6N2E2_4941 at 5698.624 kb on - strand, within Pf6N2E2_4941 at 5698.624 kb on - strand, within Pf6N2E2_4941 at 5698.624 kb on - strand, within Pf6N2E2_4941 at 5698.624 kb on - strand, within Pf6N2E2_4941 at 5698.624 kb on - strand, within Pf6N2E2_4941 at 5698.633 kb on - strand, within Pf6N2E2_4941 at 5698.633 kb on - strand, within Pf6N2E2_4941 at 5698.633 kb on - strand, within Pf6N2E2_4941 at 5698.633 kb on - strand, within Pf6N2E2_4941 at 5698.831 kb on - strand at 5698.914 kb on + strand at 5698.914 kb on + strand at 5698.915 kb on - strand at 5698.915 kb on - strand at 5698.915 kb on - strand at 5698.915 kb on - strand at 5698.923 kb on + strand at 5698.924 kb on - strand at 5698.924 kb on - strand at 5699.026 kb on + strand at 5699.027 kb on - strand at 5699.051 kb on + strand at 5699.051 kb on + strand at 5699.052 kb on - strand at 5699.052 kb on - strand at 5699.090 kb on + strand at 5699.090 kb on + strand at 5699.135 kb on - strand at 5699.135 kb on - strand at 5699.199 kb on + strand at 5699.199 kb on + strand at 5699.199 kb on + strand at 5699.200 kb on - strand at 5699.200 kb on - strand at 5699.200 kb on - strand at 5699.305 kb on + strand, within Pf6N2E2_4942 at 5699.305 kb on + strand, within Pf6N2E2_4942 at 5699.346 kb on + strand, within Pf6N2E2_4942 at 5699.346 kb on + strand, within Pf6N2E2_4942 at 5699.346 kb on + strand, within Pf6N2E2_4942 at 5699.347 kb on - strand, within Pf6N2E2_4942 at 5699.347 kb on - strand, within Pf6N2E2_4942 at 5699.347 kb on - strand, within Pf6N2E2_4942 at 5699.361 kb on - strand, within Pf6N2E2_4942 at 5699.361 kb on - strand, within Pf6N2E2_4942 at 5699.385 kb on + strand, within Pf6N2E2_4942 at 5699.385 kb on + strand, within Pf6N2E2_4942 at 5699.386 kb on - strand, within Pf6N2E2_4942 at 5699.502 kb on + strand, within Pf6N2E2_4942 at 5699.503 kb on - strand, within Pf6N2E2_4942 at 5699.503 kb on - strand, within Pf6N2E2_4942 at 5699.782 kb on - strand at 5699.801 kb on - strand at 5699.801 kb on - strand at 5699.801 kb on - strand at 5700.007 kb on + strand, within Pf6N2E2_4943 at 5700.007 kb on + strand, within Pf6N2E2_4943 at 5700.503 kb on - strand at 5700.503 kb on - strand at 5700.619 kb on + strand at 5700.619 kb on + strand at 5700.619 kb on + strand at 5700.619 kb on + strand at 5700.619 kb on + strand at 5700.619 kb on + strand at 5700.620 kb on - strand at 5700.620 kb on - strand at 5700.642 kb on - strand at 5700.642 kb on - strand at 5700.656 kb on + strand at 5700.656 kb on + strand at 5700.684 kb on + strand at 5700.685 kb on - strand at 5700.685 kb on - strand at 5700.715 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M remove 5,698,203 - Pf6N2E2_4941 0.24 +1.3 5,698,358 - Pf6N2E2_4941 0.43 -1.8 5,698,358 - Pf6N2E2_4941 0.43 +1.5 5,698,358 - Pf6N2E2_4941 0.43 -0.3 5,698,358 - Pf6N2E2_4941 0.43 -3.0 5,698,358 - Pf6N2E2_4941 0.43 -1.0 5,698,615 - Pf6N2E2_4941 0.74 +0.6 5,698,615 - Pf6N2E2_4941 0.74 +0.8 5,698,623 + Pf6N2E2_4941 0.75 +1.0 5,698,623 + Pf6N2E2_4941 0.75 -0.2 5,698,623 + Pf6N2E2_4941 0.75 +0.1 5,698,623 + Pf6N2E2_4941 0.75 -0.2 5,698,623 + Pf6N2E2_4941 0.75 -0.5 5,698,623 + Pf6N2E2_4941 0.75 +0.4 5,698,623 + Pf6N2E2_4941 0.75 -1.6 5,698,623 + Pf6N2E2_4941 0.75 +0.9 5,698,623 + Pf6N2E2_4941 0.75 +0.3 5,698,624 - Pf6N2E2_4941 0.75 +0.3 5,698,624 - Pf6N2E2_4941 0.75 +0.4 5,698,624 - Pf6N2E2_4941 0.75 +1.6 5,698,624 - Pf6N2E2_4941 0.75 +1.2 5,698,624 - Pf6N2E2_4941 0.75 -0.1 5,698,624 - Pf6N2E2_4941 0.75 +0.1 5,698,624 - Pf6N2E2_4941 0.75 -0.9 5,698,624 - Pf6N2E2_4941 0.75 +1.2 5,698,633 - Pf6N2E2_4941 0.76 +0.8 5,698,633 - Pf6N2E2_4941 0.76 +0.7 5,698,633 - Pf6N2E2_4941 0.76 -0.8 5,698,633 - Pf6N2E2_4941 0.76 -0.2 5,698,831 - +0.5 5,698,914 + +1.6 5,698,914 + +0.7 5,698,915 - +0.2 5,698,915 - -2.2 5,698,915 - -0.7 5,698,915 - +1.6 5,698,923 + -1.8 5,698,924 - +0.7 5,698,924 - -2.9 5,699,026 + +0.5 5,699,027 - +0.2 5,699,051 + +1.4 5,699,051 + -0.2 5,699,052 - +0.4 5,699,052 - -1.7 5,699,090 + -0.9 5,699,090 + +0.7 5,699,135 - -0.9 5,699,135 - -0.5 5,699,199 + +0.6 5,699,199 + -0.1 5,699,199 + -0.2 5,699,200 - +0.5 5,699,200 - -1.2 5,699,200 - -2.6 5,699,305 + Pf6N2E2_4942 0.18 -0.7 5,699,305 + Pf6N2E2_4942 0.18 +1.1 5,699,346 + Pf6N2E2_4942 0.25 +1.4 5,699,346 + Pf6N2E2_4942 0.25 +1.8 5,699,346 + Pf6N2E2_4942 0.25 +1.3 5,699,347 - Pf6N2E2_4942 0.25 -0.5 5,699,347 - Pf6N2E2_4942 0.25 +1.1 5,699,347 - Pf6N2E2_4942 0.25 +1.3 5,699,361 - Pf6N2E2_4942 0.27 -2.2 5,699,361 - Pf6N2E2_4942 0.27 +1.2 5,699,385 + Pf6N2E2_4942 0.31 +1.0 5,699,385 + Pf6N2E2_4942 0.31 -0.1 5,699,386 - Pf6N2E2_4942 0.32 -3.1 5,699,502 + Pf6N2E2_4942 0.52 -0.3 5,699,503 - Pf6N2E2_4942 0.52 +2.9 5,699,503 - Pf6N2E2_4942 0.52 -1.2 5,699,782 - +0.9 5,699,801 - +2.6 5,699,801 - -2.5 5,699,801 - +0.7 5,700,007 + Pf6N2E2_4943 0.29 +0.2 5,700,007 + Pf6N2E2_4943 0.29 +0.8 5,700,503 - -3.0 5,700,503 - -0.9 5,700,619 + -0.8 5,700,619 + -0.2 5,700,619 + -0.8 5,700,619 + +1.0 5,700,619 + +0.7 5,700,619 + +0.2 5,700,620 - +0.8 5,700,620 - +1.1 5,700,642 - -0.2 5,700,642 - +1.1 5,700,656 + +0.1 5,700,656 + +1.2 5,700,684 + -0.2 5,700,685 - +0.4 5,700,685 - -2.5 5,700,715 + -0.2
Or see this region's nucleotide sequence