Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4524

Experiment: DEANONOate 0.000625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4523 and Pf6N2E2_4524 are separated by 215 nucleotidesPf6N2E2_4524 and Pf6N2E2_4525 overlap by 4 nucleotidesPf6N2E2_4525 and Pf6N2E2_4526 are separated by 62 nucleotidesPf6N2E2_4526 and Pf6N2E2_4527 overlap by 4 nucleotides Pf6N2E2_4523 - Esterase A, at 5,258,573 to 5,259,655 _4523 Pf6N2E2_4524 - putative cytochrome P450 hydroxylase, at 5,259,871 to 5,261,088 _4524 Pf6N2E2_4525 - hypothetical protein, at 5,261,085 to 5,261,213 _4525 Pf6N2E2_4526 - Phosphinothricin N-acetyltransferase (EC 2.3.1.-), at 5,261,276 to 5,261,872 _4526 Pf6N2E2_4527 - RNA polymerase sigma-70 factor, ECF subfamily, at 5,261,869 to 5,262,420 _4527 Position (kb) 5259 5260 5261 5262Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5258.896 kb on - strand, within Pf6N2E2_4523at 5258.896 kb on - strand, within Pf6N2E2_4523at 5258.896 kb on - strand, within Pf6N2E2_4523at 5259.099 kb on + strand, within Pf6N2E2_4523at 5259.099 kb on + strand, within Pf6N2E2_4523at 5259.099 kb on + strand, within Pf6N2E2_4523at 5259.100 kb on - strand, within Pf6N2E2_4523at 5259.100 kb on - strand, within Pf6N2E2_4523at 5259.212 kb on + strand, within Pf6N2E2_4523at 5259.252 kb on + strand, within Pf6N2E2_4523at 5259.252 kb on + strand, within Pf6N2E2_4523at 5259.252 kb on + strand, within Pf6N2E2_4523at 5259.252 kb on + strand, within Pf6N2E2_4523at 5259.252 kb on + strand, within Pf6N2E2_4523at 5259.252 kb on + strand, within Pf6N2E2_4523at 5259.252 kb on + strand, within Pf6N2E2_4523at 5259.252 kb on + strand, within Pf6N2E2_4523at 5259.253 kb on - strand, within Pf6N2E2_4523at 5259.253 kb on - strand, within Pf6N2E2_4523at 5259.253 kb on - strand, within Pf6N2E2_4523at 5259.324 kb on + strand, within Pf6N2E2_4523at 5259.664 kb on + strandat 5259.925 kb on + strandat 5259.935 kb on - strandat 5260.000 kb on + strand, within Pf6N2E2_4524at 5260.000 kb on + strand, within Pf6N2E2_4524at 5260.000 kb on + strand, within Pf6N2E2_4524at 5260.000 kb on + strand, within Pf6N2E2_4524at 5260.000 kb on + strand, within Pf6N2E2_4524at 5260.000 kb on + strand, within Pf6N2E2_4524at 5260.000 kb on + strand, within Pf6N2E2_4524at 5260.001 kb on - strand, within Pf6N2E2_4524at 5260.298 kb on - strand, within Pf6N2E2_4524at 5260.432 kb on + strand, within Pf6N2E2_4524at 5260.432 kb on + strand, within Pf6N2E2_4524at 5260.432 kb on + strand, within Pf6N2E2_4524at 5260.432 kb on + strand, within Pf6N2E2_4524at 5260.432 kb on + strand, within Pf6N2E2_4524at 5260.432 kb on + strand, within Pf6N2E2_4524at 5260.433 kb on - strand, within Pf6N2E2_4524at 5260.433 kb on - strand, within Pf6N2E2_4524at 5260.450 kb on + strand, within Pf6N2E2_4524at 5260.451 kb on - strand, within Pf6N2E2_4524at 5260.451 kb on - strand, within Pf6N2E2_4524at 5260.451 kb on - strand, within Pf6N2E2_4524at 5260.715 kb on - strand, within Pf6N2E2_4524at 5260.915 kb on + strand, within Pf6N2E2_4524at 5260.915 kb on + strand, within Pf6N2E2_4524at 5260.915 kb on + strand, within Pf6N2E2_4524at 5260.973 kb on + strandat 5260.973 kb on + strandat 5260.974 kb on - strandat 5260.974 kb on - strandat 5261.019 kb on - strandat 5261.030 kb on - strandat 5261.359 kb on - strand, within Pf6N2E2_4526at 5261.439 kb on - strand, within Pf6N2E2_4526at 5261.499 kb on + strand, within Pf6N2E2_4526at 5261.500 kb on - strand, within Pf6N2E2_4526at 5261.570 kb on + strand, within Pf6N2E2_4526at 5261.571 kb on - strand, within Pf6N2E2_4526at 5261.574 kb on + strand, within Pf6N2E2_4526at 5261.574 kb on + strand, within Pf6N2E2_4526at 5261.575 kb on - strand, within Pf6N2E2_4526at 5261.575 kb on - strand, within Pf6N2E2_4526at 5261.575 kb on - strand, within Pf6N2E2_4526at 5261.575 kb on - strand, within Pf6N2E2_4526at 5261.575 kb on - strand, within Pf6N2E2_4526at 5261.575 kb on - strand, within Pf6N2E2_4526at 5261.673 kb on + strand, within Pf6N2E2_4526at 5261.673 kb on + strand, within Pf6N2E2_4526at 5261.673 kb on + strand, within Pf6N2E2_4526at 5261.673 kb on + strand, within Pf6N2E2_4526at 5261.673 kb on + strand, within Pf6N2E2_4526at 5261.673 kb on + strand, within Pf6N2E2_4526at 5261.673 kb on + strand, within Pf6N2E2_4526at 5261.673 kb on + strand, within Pf6N2E2_4526at 5261.674 kb on - strand, within Pf6N2E2_4526at 5261.674 kb on - strand, within Pf6N2E2_4526at 5261.674 kb on - strand, within Pf6N2E2_4526at 5261.674 kb on - strand, within Pf6N2E2_4526at 5261.674 kb on - strand, within Pf6N2E2_4526at 5261.758 kb on + strand, within Pf6N2E2_4526at 5261.758 kb on + strand, within Pf6N2E2_4526at 5261.759 kb on - strand, within Pf6N2E2_4526at 5261.786 kb on - strand, within Pf6N2E2_4526at 5261.786 kb on - strand, within Pf6N2E2_4526at 5261.888 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M
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5,258,896 - Pf6N2E2_4523 0.30 -0.5
5,258,896 - Pf6N2E2_4523 0.30 +1.6
5,258,896 - Pf6N2E2_4523 0.30 -0.3
5,259,099 + Pf6N2E2_4523 0.49 -1.5
5,259,099 + Pf6N2E2_4523 0.49 -0.6
5,259,099 + Pf6N2E2_4523 0.49 -0.5
5,259,100 - Pf6N2E2_4523 0.49 +0.3
5,259,100 - Pf6N2E2_4523 0.49 -0.1
5,259,212 + Pf6N2E2_4523 0.59 -0.8
5,259,252 + Pf6N2E2_4523 0.63 +0.2
5,259,252 + Pf6N2E2_4523 0.63 -1.8
5,259,252 + Pf6N2E2_4523 0.63 +1.3
5,259,252 + Pf6N2E2_4523 0.63 +1.5
5,259,252 + Pf6N2E2_4523 0.63 +0.2
5,259,252 + Pf6N2E2_4523 0.63 +0.1
5,259,252 + Pf6N2E2_4523 0.63 -1.1
5,259,252 + Pf6N2E2_4523 0.63 -0.3
5,259,253 - Pf6N2E2_4523 0.63 -1.6
5,259,253 - Pf6N2E2_4523 0.63 +0.6
5,259,253 - Pf6N2E2_4523 0.63 +0.2
5,259,324 + Pf6N2E2_4523 0.69 -1.5
5,259,664 + -2.1
5,259,925 + -0.6
5,259,935 - +0.9
5,260,000 + Pf6N2E2_4524 0.11 +1.3
5,260,000 + Pf6N2E2_4524 0.11 +0.5
5,260,000 + Pf6N2E2_4524 0.11 +0.2
5,260,000 + Pf6N2E2_4524 0.11 +0.9
5,260,000 + Pf6N2E2_4524 0.11 -3.8
5,260,000 + Pf6N2E2_4524 0.11 -0.5
5,260,000 + Pf6N2E2_4524 0.11 +0.9
5,260,001 - Pf6N2E2_4524 0.11 -0.8
5,260,298 - Pf6N2E2_4524 0.35 -1.2
5,260,432 + Pf6N2E2_4524 0.46 +0.9
5,260,432 + Pf6N2E2_4524 0.46 +0.4
5,260,432 + Pf6N2E2_4524 0.46 +1.2
5,260,432 + Pf6N2E2_4524 0.46 -2.5
5,260,432 + Pf6N2E2_4524 0.46 -0.2
5,260,432 + Pf6N2E2_4524 0.46 +0.5
5,260,433 - Pf6N2E2_4524 0.46 +1.6
5,260,433 - Pf6N2E2_4524 0.46 +1.1
5,260,450 + Pf6N2E2_4524 0.48 -1.5
5,260,451 - Pf6N2E2_4524 0.48 +1.6
5,260,451 - Pf6N2E2_4524 0.48 +1.5
5,260,451 - Pf6N2E2_4524 0.48 -1.9
5,260,715 - Pf6N2E2_4524 0.69 +0.4
5,260,915 + Pf6N2E2_4524 0.86 +1.2
5,260,915 + Pf6N2E2_4524 0.86 -0.4
5,260,915 + Pf6N2E2_4524 0.86 +1.1
5,260,973 + -1.1
5,260,973 + +0.5
5,260,974 - +0.1
5,260,974 - -0.4
5,261,019 - -1.6
5,261,030 - +0.0
5,261,359 - Pf6N2E2_4526 0.14 -0.2
5,261,439 - Pf6N2E2_4526 0.27 -0.8
5,261,499 + Pf6N2E2_4526 0.37 +0.6
5,261,500 - Pf6N2E2_4526 0.38 -2.2
5,261,570 + Pf6N2E2_4526 0.49 +0.1
5,261,571 - Pf6N2E2_4526 0.49 -2.3
5,261,574 + Pf6N2E2_4526 0.50 +0.5
5,261,574 + Pf6N2E2_4526 0.50 -2.0
5,261,575 - Pf6N2E2_4526 0.50 -0.5
5,261,575 - Pf6N2E2_4526 0.50 +0.5
5,261,575 - Pf6N2E2_4526 0.50 -0.0
5,261,575 - Pf6N2E2_4526 0.50 -1.2
5,261,575 - Pf6N2E2_4526 0.50 -2.7
5,261,575 - Pf6N2E2_4526 0.50 -1.1
5,261,673 + Pf6N2E2_4526 0.66 -2.4
5,261,673 + Pf6N2E2_4526 0.66 -0.4
5,261,673 + Pf6N2E2_4526 0.66 +0.4
5,261,673 + Pf6N2E2_4526 0.66 -0.5
5,261,673 + Pf6N2E2_4526 0.66 -1.3
5,261,673 + Pf6N2E2_4526 0.66 -1.0
5,261,673 + Pf6N2E2_4526 0.66 +0.4
5,261,673 + Pf6N2E2_4526 0.66 -0.4
5,261,674 - Pf6N2E2_4526 0.67 +0.9
5,261,674 - Pf6N2E2_4526 0.67 -0.0
5,261,674 - Pf6N2E2_4526 0.67 +0.0
5,261,674 - Pf6N2E2_4526 0.67 +0.2
5,261,674 - Pf6N2E2_4526 0.67 +0.9
5,261,758 + Pf6N2E2_4526 0.81 -0.8
5,261,758 + Pf6N2E2_4526 0.81 +1.8
5,261,759 - Pf6N2E2_4526 0.81 +1.3
5,261,786 - Pf6N2E2_4526 0.85 +0.1
5,261,786 - Pf6N2E2_4526 0.85 +0.8
5,261,888 + -0.5

Or see this region's nucleotide sequence