Experiment: DEANONOate 0.000625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_329 and Pf6N2E2_330 are separated by 241 nucleotides Pf6N2E2_330 and Pf6N2E2_331 are separated by 265 nucleotides Pf6N2E2_331 and Pf6N2E2_332 are separated by 23 nucleotides
Pf6N2E2_329 - L-lactate permease, at 396,693 to 398,456
_329
Pf6N2E2_330 - Mesenchymal stem cell protein DSCD75, at 398,698 to 399,249
_330
Pf6N2E2_331 - Putative translation initiation inhibitor, yjgF family, at 399,515 to 399,946
_331
Pf6N2E2_332 - putative nucleoside-diphosphate-sugar epimerase, at 399,970 to 400,848
_332
Position (kb) 398
399
400 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 397.729 kb on + strand, within Pf6N2E2_329 at 397.729 kb on + strand, within Pf6N2E2_329 at 397.730 kb on - strand, within Pf6N2E2_329 at 398.248 kb on + strand, within Pf6N2E2_329 at 398.249 kb on - strand, within Pf6N2E2_329 at 398.437 kb on + strand at 398.438 kb on - strand at 398.474 kb on + strand at 398.516 kb on + strand at 398.516 kb on + strand at 398.516 kb on + strand at 398.516 kb on + strand at 398.516 kb on + strand at 398.517 kb on - strand at 398.517 kb on - strand at 398.517 kb on - strand at 398.518 kb on + strand at 398.519 kb on - strand at 398.623 kb on + strand at 398.683 kb on + strand at 398.683 kb on + strand at 398.683 kb on + strand at 398.683 kb on + strand at 398.684 kb on - strand at 398.684 kb on - strand at 399.074 kb on + strand, within Pf6N2E2_330 at 399.074 kb on + strand, within Pf6N2E2_330 at 399.075 kb on - strand, within Pf6N2E2_330 at 399.107 kb on + strand, within Pf6N2E2_330 at 399.108 kb on - strand, within Pf6N2E2_330 at 399.108 kb on - strand, within Pf6N2E2_330 at 399.283 kb on + strand at 399.284 kb on - strand at 399.307 kb on - strand at 399.392 kb on + strand at 399.494 kb on - strand at 399.624 kb on + strand, within Pf6N2E2_331 at 399.624 kb on + strand, within Pf6N2E2_331 at 399.666 kb on + strand, within Pf6N2E2_331 at 399.666 kb on + strand, within Pf6N2E2_331 at 399.666 kb on + strand, within Pf6N2E2_331 at 399.938 kb on - strand at 400.016 kb on + strand at 400.016 kb on + strand at 400.016 kb on + strand at 400.016 kb on + strand at 400.016 kb on + strand at 400.017 kb on - strand at 400.017 kb on - strand at 400.017 kb on - strand at 400.017 kb on - strand at 400.017 kb on - strand at 400.075 kb on + strand, within Pf6N2E2_332 at 400.232 kb on + strand, within Pf6N2E2_332
Per-strain Table
Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M remove 397,729 + Pf6N2E2_329 0.59 +0.7 397,729 + Pf6N2E2_329 0.59 -1.8 397,730 - Pf6N2E2_329 0.59 +0.6 398,248 + Pf6N2E2_329 0.88 -0.7 398,249 - Pf6N2E2_329 0.88 -1.0 398,437 + +0.1 398,438 - +0.7 398,474 + +0.8 398,516 + +0.7 398,516 + +1.4 398,516 + -0.5 398,516 + -1.1 398,516 + -1.6 398,517 - -2.5 398,517 - +2.1 398,517 - +0.5 398,518 + +0.1 398,519 - +1.0 398,623 + +0.7 398,683 + -3.1 398,683 + +1.3 398,683 + -0.2 398,683 + +0.4 398,684 - +1.3 398,684 - +0.8 399,074 + Pf6N2E2_330 0.68 -0.7 399,074 + Pf6N2E2_330 0.68 +0.9 399,075 - Pf6N2E2_330 0.68 -0.9 399,107 + Pf6N2E2_330 0.74 -0.3 399,108 - Pf6N2E2_330 0.74 -1.3 399,108 - Pf6N2E2_330 0.74 +0.4 399,283 + +0.1 399,284 - +2.1 399,307 - +0.1 399,392 + -0.9 399,494 - -0.3 399,624 + Pf6N2E2_331 0.25 -0.5 399,624 + Pf6N2E2_331 0.25 -2.1 399,666 + Pf6N2E2_331 0.35 +1.0 399,666 + Pf6N2E2_331 0.35 -0.8 399,666 + Pf6N2E2_331 0.35 -0.2 399,938 - +0.7 400,016 + +2.0 400,016 + -0.1 400,016 + -1.1 400,016 + +1.0 400,016 + -0.7 400,017 - +1.9 400,017 - +0.7 400,017 - -0.1 400,017 - +1.2 400,017 - +1.2 400,075 + Pf6N2E2_332 0.12 -0.3 400,232 + Pf6N2E2_332 0.30 +1.4
Or see this region's nucleotide sequence