Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3274

Experiment: DEANONOate 0.000625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3272 and Pf6N2E2_3273 are separated by 4 nucleotidesPf6N2E2_3273 and Pf6N2E2_3274 are separated by 64 nucleotidesPf6N2E2_3274 and Pf6N2E2_3275 are separated by 2 nucleotidesPf6N2E2_3275 and Pf6N2E2_3276 are separated by 28 nucleotides Pf6N2E2_3272 - Metal transporter, ZIP family, at 3,777,053 to 3,777,433 _3272 Pf6N2E2_3273 - Metal transporter, ZIP family, at 3,777,438 to 3,777,908 _3273 Pf6N2E2_3274 - Manganese superoxide dismutase (EC 1.15.1.1), at 3,777,973 to 3,778,584 _3274 Pf6N2E2_3275 - FOG: TPR repeat, at 3,778,587 to 3,779,027 _3275 Pf6N2E2_3276 - Fumarate hydratase class II (EC 4.2.1.2), at 3,779,056 to 3,780,432 _3276 Position (kb) 3777 3778 3779Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3777.516 kb on + strand, within Pf6N2E2_3273at 3777.559 kb on + strand, within Pf6N2E2_3273at 3777.559 kb on + strand, within Pf6N2E2_3273at 3777.559 kb on + strand, within Pf6N2E2_3273at 3777.559 kb on + strand, within Pf6N2E2_3273at 3777.560 kb on - strand, within Pf6N2E2_3273at 3777.560 kb on - strand, within Pf6N2E2_3273at 3777.708 kb on + strand, within Pf6N2E2_3273at 3777.709 kb on - strand, within Pf6N2E2_3273at 3777.879 kb on + strandat 3777.879 kb on + strandat 3777.879 kb on + strandat 3777.899 kb on - strandat 3777.964 kb on - strandat 3778.028 kb on + strandat 3778.028 kb on + strandat 3778.029 kb on - strandat 3778.029 kb on - strandat 3778.029 kb on - strandat 3778.029 kb on - strandat 3778.043 kb on + strand, within Pf6N2E2_3274at 3778.044 kb on - strand, within Pf6N2E2_3274at 3778.064 kb on + strand, within Pf6N2E2_3274at 3778.064 kb on + strand, within Pf6N2E2_3274at 3778.065 kb on - strand, within Pf6N2E2_3274at 3778.073 kb on + strand, within Pf6N2E2_3274at 3778.074 kb on - strand, within Pf6N2E2_3274at 3778.074 kb on - strand, within Pf6N2E2_3274at 3778.074 kb on - strand, within Pf6N2E2_3274at 3778.074 kb on - strand, within Pf6N2E2_3274at 3778.076 kb on + strand, within Pf6N2E2_3274at 3778.076 kb on + strand, within Pf6N2E2_3274at 3778.077 kb on - strand, within Pf6N2E2_3274at 3778.077 kb on - strand, within Pf6N2E2_3274at 3778.113 kb on + strand, within Pf6N2E2_3274at 3778.481 kb on + strand, within Pf6N2E2_3274at 3778.481 kb on + strand, within Pf6N2E2_3274at 3778.481 kb on + strand, within Pf6N2E2_3274at 3778.482 kb on - strand, within Pf6N2E2_3274at 3778.482 kb on - strand, within Pf6N2E2_3274at 3778.482 kb on - strand, within Pf6N2E2_3274at 3778.482 kb on - strand, within Pf6N2E2_3274at 3778.482 kb on - strand, within Pf6N2E2_3274at 3778.502 kb on + strand, within Pf6N2E2_3274at 3778.550 kb on + strandat 3778.551 kb on - strandat 3778.575 kb on + strandat 3778.575 kb on + strandat 3778.575 kb on + strandat 3778.670 kb on - strand, within Pf6N2E2_3275at 3778.708 kb on + strand, within Pf6N2E2_3275at 3778.708 kb on + strand, within Pf6N2E2_3275at 3778.708 kb on + strand, within Pf6N2E2_3275at 3778.708 kb on + strand, within Pf6N2E2_3275at 3778.708 kb on + strand, within Pf6N2E2_3275at 3778.708 kb on + strand, within Pf6N2E2_3275at 3778.708 kb on + strand, within Pf6N2E2_3275at 3778.709 kb on - strand, within Pf6N2E2_3275at 3778.709 kb on - strand, within Pf6N2E2_3275at 3778.709 kb on - strand, within Pf6N2E2_3275at 3778.709 kb on - strand, within Pf6N2E2_3275at 3778.948 kb on + strand, within Pf6N2E2_3275at 3778.949 kb on - strand, within Pf6N2E2_3275at 3778.965 kb on + strand, within Pf6N2E2_3275at 3778.966 kb on - strand, within Pf6N2E2_3275at 3779.009 kb on + strandat 3779.009 kb on + strandat 3779.009 kb on + strandat 3779.010 kb on - strandat 3779.010 kb on - strandat 3779.166 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M
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3,777,516 + Pf6N2E2_3273 0.17 -0.3
3,777,559 + Pf6N2E2_3273 0.26 -0.2
3,777,559 + Pf6N2E2_3273 0.26 -0.4
3,777,559 + Pf6N2E2_3273 0.26 -0.2
3,777,559 + Pf6N2E2_3273 0.26 -0.6
3,777,560 - Pf6N2E2_3273 0.26 -0.9
3,777,560 - Pf6N2E2_3273 0.26 +0.4
3,777,708 + Pf6N2E2_3273 0.57 -0.5
3,777,709 - Pf6N2E2_3273 0.58 -1.7
3,777,879 + +0.4
3,777,879 + +1.3
3,777,879 + -0.4
3,777,899 - +0.9
3,777,964 - +1.9
3,778,028 + +0.2
3,778,028 + -1.0
3,778,029 - +2.2
3,778,029 - +1.2
3,778,029 - +1.4
3,778,029 - +2.0
3,778,043 + Pf6N2E2_3274 0.11 -1.6
3,778,044 - Pf6N2E2_3274 0.12 +2.1
3,778,064 + Pf6N2E2_3274 0.15 +1.6
3,778,064 + Pf6N2E2_3274 0.15 -0.2
3,778,065 - Pf6N2E2_3274 0.15 +1.8
3,778,073 + Pf6N2E2_3274 0.16 -1.0
3,778,074 - Pf6N2E2_3274 0.17 +1.7
3,778,074 - Pf6N2E2_3274 0.17 +2.0
3,778,074 - Pf6N2E2_3274 0.17 +0.8
3,778,074 - Pf6N2E2_3274 0.17 +2.5
3,778,076 + Pf6N2E2_3274 0.17 -0.7
3,778,076 + Pf6N2E2_3274 0.17 +0.8
3,778,077 - Pf6N2E2_3274 0.17 +0.7
3,778,077 - Pf6N2E2_3274 0.17 +1.4
3,778,113 + Pf6N2E2_3274 0.23 +0.7
3,778,481 + Pf6N2E2_3274 0.83 +1.1
3,778,481 + Pf6N2E2_3274 0.83 -2.0
3,778,481 + Pf6N2E2_3274 0.83 +1.1
3,778,482 - Pf6N2E2_3274 0.83 +1.8
3,778,482 - Pf6N2E2_3274 0.83 +0.9
3,778,482 - Pf6N2E2_3274 0.83 +2.4
3,778,482 - Pf6N2E2_3274 0.83 +0.5
3,778,482 - Pf6N2E2_3274 0.83 +1.7
3,778,502 + Pf6N2E2_3274 0.86 -0.7
3,778,550 + +0.8
3,778,551 - +1.8
3,778,575 + +1.4
3,778,575 + +0.4
3,778,575 + +0.9
3,778,670 - Pf6N2E2_3275 0.19 +2.3
3,778,708 + Pf6N2E2_3275 0.27 +0.5
3,778,708 + Pf6N2E2_3275 0.27 +0.2
3,778,708 + Pf6N2E2_3275 0.27 +0.3
3,778,708 + Pf6N2E2_3275 0.27 +0.1
3,778,708 + Pf6N2E2_3275 0.27 +0.5
3,778,708 + Pf6N2E2_3275 0.27 +0.4
3,778,708 + Pf6N2E2_3275 0.27 -0.6
3,778,709 - Pf6N2E2_3275 0.28 +1.4
3,778,709 - Pf6N2E2_3275 0.28 +2.5
3,778,709 - Pf6N2E2_3275 0.28 +2.6
3,778,709 - Pf6N2E2_3275 0.28 +3.4
3,778,948 + Pf6N2E2_3275 0.82 -0.6
3,778,949 - Pf6N2E2_3275 0.82 +2.1
3,778,965 + Pf6N2E2_3275 0.86 +0.1
3,778,966 - Pf6N2E2_3275 0.86 +2.8
3,779,009 + -1.0
3,779,009 + +1.0
3,779,009 + +0.7
3,779,010 - +1.6
3,779,010 - +1.9
3,779,166 - +1.9

Or see this region's nucleotide sequence