Experiment: DEANONOate 0.000625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3272 and Pf6N2E2_3273 are separated by 4 nucleotides Pf6N2E2_3273 and Pf6N2E2_3274 are separated by 64 nucleotides Pf6N2E2_3274 and Pf6N2E2_3275 are separated by 2 nucleotides Pf6N2E2_3275 and Pf6N2E2_3276 are separated by 28 nucleotides
Pf6N2E2_3272 - Metal transporter, ZIP family, at 3,777,053 to 3,777,433
_3272
Pf6N2E2_3273 - Metal transporter, ZIP family, at 3,777,438 to 3,777,908
_3273
Pf6N2E2_3274 - Manganese superoxide dismutase (EC 1.15.1.1), at 3,777,973 to 3,778,584
_3274
Pf6N2E2_3275 - FOG: TPR repeat, at 3,778,587 to 3,779,027
_3275
Pf6N2E2_3276 - Fumarate hydratase class II (EC 4.2.1.2), at 3,779,056 to 3,780,432
_3276
Position (kb)
3777
3778
3779 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3777.516 kb on + strand, within Pf6N2E2_3273 at 3777.559 kb on + strand, within Pf6N2E2_3273 at 3777.559 kb on + strand, within Pf6N2E2_3273 at 3777.559 kb on + strand, within Pf6N2E2_3273 at 3777.559 kb on + strand, within Pf6N2E2_3273 at 3777.560 kb on - strand, within Pf6N2E2_3273 at 3777.560 kb on - strand, within Pf6N2E2_3273 at 3777.708 kb on + strand, within Pf6N2E2_3273 at 3777.709 kb on - strand, within Pf6N2E2_3273 at 3777.879 kb on + strand at 3777.879 kb on + strand at 3777.879 kb on + strand at 3777.899 kb on - strand at 3777.964 kb on - strand at 3778.028 kb on + strand at 3778.028 kb on + strand at 3778.029 kb on - strand at 3778.029 kb on - strand at 3778.029 kb on - strand at 3778.029 kb on - strand at 3778.043 kb on + strand, within Pf6N2E2_3274 at 3778.044 kb on - strand, within Pf6N2E2_3274 at 3778.064 kb on + strand, within Pf6N2E2_3274 at 3778.064 kb on + strand, within Pf6N2E2_3274 at 3778.065 kb on - strand, within Pf6N2E2_3274 at 3778.073 kb on + strand, within Pf6N2E2_3274 at 3778.074 kb on - strand, within Pf6N2E2_3274 at 3778.074 kb on - strand, within Pf6N2E2_3274 at 3778.074 kb on - strand, within Pf6N2E2_3274 at 3778.074 kb on - strand, within Pf6N2E2_3274 at 3778.076 kb on + strand, within Pf6N2E2_3274 at 3778.076 kb on + strand, within Pf6N2E2_3274 at 3778.077 kb on - strand, within Pf6N2E2_3274 at 3778.077 kb on - strand, within Pf6N2E2_3274 at 3778.113 kb on + strand, within Pf6N2E2_3274 at 3778.481 kb on + strand, within Pf6N2E2_3274 at 3778.481 kb on + strand, within Pf6N2E2_3274 at 3778.481 kb on + strand, within Pf6N2E2_3274 at 3778.482 kb on - strand, within Pf6N2E2_3274 at 3778.482 kb on - strand, within Pf6N2E2_3274 at 3778.482 kb on - strand, within Pf6N2E2_3274 at 3778.482 kb on - strand, within Pf6N2E2_3274 at 3778.482 kb on - strand, within Pf6N2E2_3274 at 3778.502 kb on + strand, within Pf6N2E2_3274 at 3778.550 kb on + strand at 3778.551 kb on - strand at 3778.575 kb on + strand at 3778.575 kb on + strand at 3778.575 kb on + strand at 3778.670 kb on - strand, within Pf6N2E2_3275 at 3778.708 kb on + strand, within Pf6N2E2_3275 at 3778.708 kb on + strand, within Pf6N2E2_3275 at 3778.708 kb on + strand, within Pf6N2E2_3275 at 3778.708 kb on + strand, within Pf6N2E2_3275 at 3778.708 kb on + strand, within Pf6N2E2_3275 at 3778.708 kb on + strand, within Pf6N2E2_3275 at 3778.708 kb on + strand, within Pf6N2E2_3275 at 3778.709 kb on - strand, within Pf6N2E2_3275 at 3778.709 kb on - strand, within Pf6N2E2_3275 at 3778.709 kb on - strand, within Pf6N2E2_3275 at 3778.709 kb on - strand, within Pf6N2E2_3275 at 3778.948 kb on + strand, within Pf6N2E2_3275 at 3778.949 kb on - strand, within Pf6N2E2_3275 at 3778.965 kb on + strand, within Pf6N2E2_3275 at 3778.966 kb on - strand, within Pf6N2E2_3275 at 3779.009 kb on + strand at 3779.009 kb on + strand at 3779.009 kb on + strand at 3779.010 kb on - strand at 3779.010 kb on - strand at 3779.166 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M remove 3,777,516 + Pf6N2E2_3273 0.17 -0.3 3,777,559 + Pf6N2E2_3273 0.26 -0.2 3,777,559 + Pf6N2E2_3273 0.26 -0.4 3,777,559 + Pf6N2E2_3273 0.26 -0.2 3,777,559 + Pf6N2E2_3273 0.26 -0.6 3,777,560 - Pf6N2E2_3273 0.26 -0.9 3,777,560 - Pf6N2E2_3273 0.26 +0.4 3,777,708 + Pf6N2E2_3273 0.57 -0.5 3,777,709 - Pf6N2E2_3273 0.58 -1.7 3,777,879 + +0.4 3,777,879 + +1.3 3,777,879 + -0.4 3,777,899 - +0.9 3,777,964 - +1.9 3,778,028 + +0.2 3,778,028 + -1.0 3,778,029 - +2.2 3,778,029 - +1.2 3,778,029 - +1.4 3,778,029 - +2.0 3,778,043 + Pf6N2E2_3274 0.11 -1.6 3,778,044 - Pf6N2E2_3274 0.12 +2.1 3,778,064 + Pf6N2E2_3274 0.15 +1.6 3,778,064 + Pf6N2E2_3274 0.15 -0.2 3,778,065 - Pf6N2E2_3274 0.15 +1.8 3,778,073 + Pf6N2E2_3274 0.16 -1.0 3,778,074 - Pf6N2E2_3274 0.17 +1.7 3,778,074 - Pf6N2E2_3274 0.17 +2.0 3,778,074 - Pf6N2E2_3274 0.17 +0.8 3,778,074 - Pf6N2E2_3274 0.17 +2.5 3,778,076 + Pf6N2E2_3274 0.17 -0.7 3,778,076 + Pf6N2E2_3274 0.17 +0.8 3,778,077 - Pf6N2E2_3274 0.17 +0.7 3,778,077 - Pf6N2E2_3274 0.17 +1.4 3,778,113 + Pf6N2E2_3274 0.23 +0.7 3,778,481 + Pf6N2E2_3274 0.83 +1.1 3,778,481 + Pf6N2E2_3274 0.83 -2.0 3,778,481 + Pf6N2E2_3274 0.83 +1.1 3,778,482 - Pf6N2E2_3274 0.83 +1.8 3,778,482 - Pf6N2E2_3274 0.83 +0.9 3,778,482 - Pf6N2E2_3274 0.83 +2.4 3,778,482 - Pf6N2E2_3274 0.83 +0.5 3,778,482 - Pf6N2E2_3274 0.83 +1.7 3,778,502 + Pf6N2E2_3274 0.86 -0.7 3,778,550 + +0.8 3,778,551 - +1.8 3,778,575 + +1.4 3,778,575 + +0.4 3,778,575 + +0.9 3,778,670 - Pf6N2E2_3275 0.19 +2.3 3,778,708 + Pf6N2E2_3275 0.27 +0.5 3,778,708 + Pf6N2E2_3275 0.27 +0.2 3,778,708 + Pf6N2E2_3275 0.27 +0.3 3,778,708 + Pf6N2E2_3275 0.27 +0.1 3,778,708 + Pf6N2E2_3275 0.27 +0.5 3,778,708 + Pf6N2E2_3275 0.27 +0.4 3,778,708 + Pf6N2E2_3275 0.27 -0.6 3,778,709 - Pf6N2E2_3275 0.28 +1.4 3,778,709 - Pf6N2E2_3275 0.28 +2.5 3,778,709 - Pf6N2E2_3275 0.28 +2.6 3,778,709 - Pf6N2E2_3275 0.28 +3.4 3,778,948 + Pf6N2E2_3275 0.82 -0.6 3,778,949 - Pf6N2E2_3275 0.82 +2.1 3,778,965 + Pf6N2E2_3275 0.86 +0.1 3,778,966 - Pf6N2E2_3275 0.86 +2.8 3,779,009 + -1.0 3,779,009 + +1.0 3,779,009 + +0.7 3,779,010 - +1.6 3,779,010 - +1.9 3,779,166 - +1.9
Or see this region's nucleotide sequence