Experiment: DEANONOate 0.000625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1911 and Pf6N2E2_1912 are separated by 225 nucleotides Pf6N2E2_1912 and Pf6N2E2_1913 are separated by 3 nucleotides
Pf6N2E2_1911 - Hydrogen peroxide-inducible genes activator, at 2,265,271 to 2,266,173
_1911
Pf6N2E2_1912 - hypothetical protein, at 2,266,399 to 2,266,533
_1912
Pf6N2E2_1913 - Putative transport protein, at 2,266,537 to 2,267,379
_1913
Position (kb)
2266
2267 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2265.424 kb on + strand, within Pf6N2E2_1911 at 2265.425 kb on - strand, within Pf6N2E2_1911 at 2265.425 kb on - strand, within Pf6N2E2_1911 at 2265.425 kb on - strand, within Pf6N2E2_1911 at 2265.425 kb on - strand, within Pf6N2E2_1911 at 2265.559 kb on + strand, within Pf6N2E2_1911 at 2265.560 kb on - strand, within Pf6N2E2_1911 at 2265.892 kb on - strand, within Pf6N2E2_1911 at 2265.923 kb on - strand, within Pf6N2E2_1911 at 2265.923 kb on - strand, within Pf6N2E2_1911 at 2265.955 kb on + strand, within Pf6N2E2_1911 at 2266.040 kb on - strand, within Pf6N2E2_1911 at 2266.040 kb on - strand, within Pf6N2E2_1911 at 2266.069 kb on - strand, within Pf6N2E2_1911 at 2266.145 kb on + strand at 2266.146 kb on - strand at 2266.146 kb on - strand at 2266.234 kb on - strand at 2266.234 kb on - strand at 2266.234 kb on - strand at 2266.322 kb on + strand at 2266.364 kb on + strand at 2266.401 kb on - strand at 2266.472 kb on + strand, within Pf6N2E2_1912 at 2266.472 kb on + strand, within Pf6N2E2_1912 at 2266.472 kb on + strand, within Pf6N2E2_1912 at 2266.472 kb on + strand, within Pf6N2E2_1912 at 2266.473 kb on - strand, within Pf6N2E2_1912 at 2266.473 kb on - strand, within Pf6N2E2_1912 at 2266.473 kb on - strand, within Pf6N2E2_1912 at 2266.631 kb on + strand, within Pf6N2E2_1913 at 2266.724 kb on - strand, within Pf6N2E2_1913 at 2266.724 kb on - strand, within Pf6N2E2_1913 at 2266.742 kb on + strand, within Pf6N2E2_1913 at 2266.759 kb on + strand, within Pf6N2E2_1913 at 2266.759 kb on + strand, within Pf6N2E2_1913 at 2266.759 kb on + strand, within Pf6N2E2_1913 at 2266.759 kb on + strand, within Pf6N2E2_1913 at 2266.759 kb on + strand, within Pf6N2E2_1913 at 2266.759 kb on + strand, within Pf6N2E2_1913 at 2266.759 kb on + strand, within Pf6N2E2_1913 at 2266.760 kb on - strand, within Pf6N2E2_1913 at 2266.763 kb on + strand, within Pf6N2E2_1913 at 2266.763 kb on + strand, within Pf6N2E2_1913 at 2266.764 kb on - strand, within Pf6N2E2_1913 at 2266.871 kb on + strand, within Pf6N2E2_1913 at 2266.871 kb on + strand, within Pf6N2E2_1913 at 2266.875 kb on + strand, within Pf6N2E2_1913 at 2266.875 kb on + strand, within Pf6N2E2_1913 at 2266.875 kb on + strand, within Pf6N2E2_1913 at 2266.875 kb on + strand, within Pf6N2E2_1913 at 2266.875 kb on + strand, within Pf6N2E2_1913 at 2266.875 kb on + strand, within Pf6N2E2_1913 at 2266.876 kb on - strand, within Pf6N2E2_1913 at 2266.876 kb on - strand, within Pf6N2E2_1913 at 2266.876 kb on - strand, within Pf6N2E2_1913 at 2266.876 kb on - strand, within Pf6N2E2_1913 at 2266.876 kb on - strand, within Pf6N2E2_1913 at 2266.876 kb on - strand, within Pf6N2E2_1913 at 2266.881 kb on - strand, within Pf6N2E2_1913 at 2267.050 kb on + strand, within Pf6N2E2_1913 at 2267.050 kb on + strand, within Pf6N2E2_1913 at 2267.051 kb on - strand, within Pf6N2E2_1913 at 2267.051 kb on - strand, within Pf6N2E2_1913 at 2267.086 kb on + strand, within Pf6N2E2_1913 at 2267.086 kb on + strand, within Pf6N2E2_1913 at 2267.150 kb on + strand, within Pf6N2E2_1913 at 2267.151 kb on - strand, within Pf6N2E2_1913 at 2267.151 kb on - strand, within Pf6N2E2_1913 at 2267.201 kb on - strand, within Pf6N2E2_1913 at 2267.201 kb on - strand, within Pf6N2E2_1913 at 2267.377 kb on + strand at 2267.378 kb on - strand at 2267.384 kb on - strand at 2267.384 kb on - strand at 2267.384 kb on - strand at 2267.384 kb on - strand at 2267.478 kb on - strand at 2267.484 kb on + strand at 2267.485 kb on - strand at 2267.485 kb on - strand at 2267.485 kb on - strand at 2267.506 kb on + strand at 2267.506 kb on + strand at 2267.507 kb on - strand at 2267.507 kb on - strand at 2267.507 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M remove 2,265,424 + Pf6N2E2_1911 0.17 +0.1 2,265,425 - Pf6N2E2_1911 0.17 +0.9 2,265,425 - Pf6N2E2_1911 0.17 +0.7 2,265,425 - Pf6N2E2_1911 0.17 -2.8 2,265,425 - Pf6N2E2_1911 0.17 +1.8 2,265,559 + Pf6N2E2_1911 0.32 +1.3 2,265,560 - Pf6N2E2_1911 0.32 +1.1 2,265,892 - Pf6N2E2_1911 0.69 +1.3 2,265,923 - Pf6N2E2_1911 0.72 -0.7 2,265,923 - Pf6N2E2_1911 0.72 +1.8 2,265,955 + Pf6N2E2_1911 0.76 -1.1 2,266,040 - Pf6N2E2_1911 0.85 -0.2 2,266,040 - Pf6N2E2_1911 0.85 +0.5 2,266,069 - Pf6N2E2_1911 0.88 -0.5 2,266,145 + -1.5 2,266,146 - -1.4 2,266,146 - +0.7 2,266,234 - -1.2 2,266,234 - +0.2 2,266,234 - +0.3 2,266,322 + +0.9 2,266,364 + +2.7 2,266,401 - -1.5 2,266,472 + Pf6N2E2_1912 0.54 -2.3 2,266,472 + Pf6N2E2_1912 0.54 -0.8 2,266,472 + Pf6N2E2_1912 0.54 +0.3 2,266,472 + Pf6N2E2_1912 0.54 -2.0 2,266,473 - Pf6N2E2_1912 0.55 -2.5 2,266,473 - Pf6N2E2_1912 0.55 +0.3 2,266,473 - Pf6N2E2_1912 0.55 -1.0 2,266,631 + Pf6N2E2_1913 0.11 -1.0 2,266,724 - Pf6N2E2_1913 0.22 -3.7 2,266,724 - Pf6N2E2_1913 0.22 -1.5 2,266,742 + Pf6N2E2_1913 0.24 +0.3 2,266,759 + Pf6N2E2_1913 0.26 -1.3 2,266,759 + Pf6N2E2_1913 0.26 +4.0 2,266,759 + Pf6N2E2_1913 0.26 -0.3 2,266,759 + Pf6N2E2_1913 0.26 -0.1 2,266,759 + Pf6N2E2_1913 0.26 +0.0 2,266,759 + Pf6N2E2_1913 0.26 -1.0 2,266,759 + Pf6N2E2_1913 0.26 +1.0 2,266,760 - Pf6N2E2_1913 0.26 -0.3 2,266,763 + Pf6N2E2_1913 0.27 +0.3 2,266,763 + Pf6N2E2_1913 0.27 -0.2 2,266,764 - Pf6N2E2_1913 0.27 +2.6 2,266,871 + Pf6N2E2_1913 0.40 +0.1 2,266,871 + Pf6N2E2_1913 0.40 +2.2 2,266,875 + Pf6N2E2_1913 0.40 -0.6 2,266,875 + Pf6N2E2_1913 0.40 -0.0 2,266,875 + Pf6N2E2_1913 0.40 -0.0 2,266,875 + Pf6N2E2_1913 0.40 -2.8 2,266,875 + Pf6N2E2_1913 0.40 +0.6 2,266,875 + Pf6N2E2_1913 0.40 +0.1 2,266,876 - Pf6N2E2_1913 0.40 +1.3 2,266,876 - Pf6N2E2_1913 0.40 -2.2 2,266,876 - Pf6N2E2_1913 0.40 -4.2 2,266,876 - Pf6N2E2_1913 0.40 +1.3 2,266,876 - Pf6N2E2_1913 0.40 +1.5 2,266,876 - Pf6N2E2_1913 0.40 -0.5 2,266,881 - Pf6N2E2_1913 0.41 +1.5 2,267,050 + Pf6N2E2_1913 0.61 -1.5 2,267,050 + Pf6N2E2_1913 0.61 +0.3 2,267,051 - Pf6N2E2_1913 0.61 +1.8 2,267,051 - Pf6N2E2_1913 0.61 +0.2 2,267,086 + Pf6N2E2_1913 0.65 -1.1 2,267,086 + Pf6N2E2_1913 0.65 -2.2 2,267,150 + Pf6N2E2_1913 0.73 +1.5 2,267,151 - Pf6N2E2_1913 0.73 +0.8 2,267,151 - Pf6N2E2_1913 0.73 -0.8 2,267,201 - Pf6N2E2_1913 0.79 -2.1 2,267,201 - Pf6N2E2_1913 0.79 -0.2 2,267,377 + -1.0 2,267,378 - +0.8 2,267,384 - -1.4 2,267,384 - -0.3 2,267,384 - -1.9 2,267,384 - +2.3 2,267,478 - -2.3 2,267,484 + +1.1 2,267,485 - -0.3 2,267,485 - +0.5 2,267,485 - +2.8 2,267,506 + -1.1 2,267,506 + -0.7 2,267,507 - -0.6 2,267,507 - +1.3 2,267,507 - -0.8
Or see this region's nucleotide sequence