Experiment: DEANONOate 0.000625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1688 and Pf6N2E2_1689 are separated by 265 nucleotides Pf6N2E2_1689 and Pf6N2E2_1690 are separated by 33 nucleotides
Pf6N2E2_1688 - Permeases of the major facilitator superfamily, at 1,997,325 to 1,998,581
_1688
Pf6N2E2_1689 - Probable porin, at 1,998,847 to 1,999,323
_1689
Pf6N2E2_1690 - Mobile element protein, at 1,999,357 to 2,000,526
_1690
Position (kb)
1998
1999
2000 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1997.928 kb on - strand, within Pf6N2E2_1688 at 1997.928 kb on - strand, within Pf6N2E2_1688 at 1998.080 kb on - strand, within Pf6N2E2_1688 at 1998.186 kb on - strand, within Pf6N2E2_1688 at 1998.494 kb on - strand at 1998.494 kb on - strand at 1998.557 kb on + strand at 1998.557 kb on + strand at 1998.558 kb on - strand at 1998.831 kb on - strand at 1998.831 kb on - strand at 1998.831 kb on - strand at 1998.848 kb on + strand at 1998.848 kb on + strand at 1998.849 kb on - strand at 1998.849 kb on - strand at 1998.880 kb on - strand at 1998.880 kb on - strand at 1998.923 kb on + strand, within Pf6N2E2_1689 at 1998.923 kb on + strand, within Pf6N2E2_1689 at 1998.923 kb on + strand, within Pf6N2E2_1689 at 1998.924 kb on - strand, within Pf6N2E2_1689 at 1998.924 kb on - strand, within Pf6N2E2_1689 at 1998.924 kb on - strand, within Pf6N2E2_1689 at 1998.924 kb on - strand, within Pf6N2E2_1689 at 1998.924 kb on - strand, within Pf6N2E2_1689 at 1998.958 kb on - strand, within Pf6N2E2_1689 at 1998.958 kb on - strand, within Pf6N2E2_1689 at 1998.958 kb on - strand, within Pf6N2E2_1689 at 1998.974 kb on + strand, within Pf6N2E2_1689 at 1998.975 kb on - strand, within Pf6N2E2_1689 at 1999.091 kb on + strand, within Pf6N2E2_1689 at 1999.163 kb on + strand, within Pf6N2E2_1689 at 1999.184 kb on + strand, within Pf6N2E2_1689 at 1999.184 kb on + strand, within Pf6N2E2_1689 at 1999.184 kb on + strand, within Pf6N2E2_1689 at 1999.184 kb on + strand, within Pf6N2E2_1689 at 1999.184 kb on + strand, within Pf6N2E2_1689 at 1999.185 kb on - strand, within Pf6N2E2_1689 at 1999.185 kb on - strand, within Pf6N2E2_1689 at 1999.185 kb on - strand, within Pf6N2E2_1689 at 1999.338 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M remove 1,997,928 - Pf6N2E2_1688 0.48 -1.4 1,997,928 - Pf6N2E2_1688 0.48 +1.5 1,998,080 - Pf6N2E2_1688 0.60 -0.3 1,998,186 - Pf6N2E2_1688 0.68 +0.8 1,998,494 - -0.6 1,998,494 - -0.6 1,998,557 + -1.4 1,998,557 + +0.9 1,998,558 - +2.7 1,998,831 - -3.8 1,998,831 - +1.4 1,998,831 - -0.4 1,998,848 + +2.7 1,998,848 + +1.4 1,998,849 - +0.0 1,998,849 - +0.4 1,998,880 - +0.0 1,998,880 - -0.2 1,998,923 + Pf6N2E2_1689 0.16 +0.4 1,998,923 + Pf6N2E2_1689 0.16 -1.5 1,998,923 + Pf6N2E2_1689 0.16 -0.2 1,998,924 - Pf6N2E2_1689 0.16 -1.0 1,998,924 - Pf6N2E2_1689 0.16 -1.7 1,998,924 - Pf6N2E2_1689 0.16 -1.2 1,998,924 - Pf6N2E2_1689 0.16 +0.0 1,998,924 - Pf6N2E2_1689 0.16 +0.3 1,998,958 - Pf6N2E2_1689 0.23 +0.6 1,998,958 - Pf6N2E2_1689 0.23 +0.0 1,998,958 - Pf6N2E2_1689 0.23 -2.9 1,998,974 + Pf6N2E2_1689 0.27 +0.5 1,998,975 - Pf6N2E2_1689 0.27 -0.2 1,999,091 + Pf6N2E2_1689 0.51 -0.2 1,999,163 + Pf6N2E2_1689 0.66 -1.2 1,999,184 + Pf6N2E2_1689 0.71 +1.4 1,999,184 + Pf6N2E2_1689 0.71 -0.7 1,999,184 + Pf6N2E2_1689 0.71 +0.7 1,999,184 + Pf6N2E2_1689 0.71 -1.3 1,999,184 + Pf6N2E2_1689 0.71 -0.8 1,999,185 - Pf6N2E2_1689 0.71 -0.6 1,999,185 - Pf6N2E2_1689 0.71 +0.4 1,999,185 - Pf6N2E2_1689 0.71 -0.1 1,999,338 - -1.8
Or see this region's nucleotide sequence