Experiment: DEANONOate 0.000625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1053 and Pf6N2E2_1054 are separated by 498 nucleotides Pf6N2E2_1054 and Pf6N2E2_1055 are separated by 153 nucleotides
Pf6N2E2_1053 - Bifunctional protein: zinc-containing alcohol dehydrogenase; quinone oxidoreductase ( NADPH:quinone reductase) (EC 1.1.1.-); Similar to arginate lyase, at 1,227,150 to 1,227,593
_1053
Pf6N2E2_1054 - integrase, putative, at 1,228,092 to 1,229,360
_1054
Pf6N2E2_1055 - Transcriptional regulator MexT, at 1,229,514 to 1,230,428
_1055
Position (kb)
1228
1229
1230 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1227.136 kb on + strand at 1227.136 kb on + strand at 1227.137 kb on - strand at 1227.137 kb on - strand at 1227.147 kb on + strand at 1227.147 kb on + strand at 1227.437 kb on - strand, within Pf6N2E2_1053 at 1227.519 kb on + strand, within Pf6N2E2_1053 at 1227.731 kb on - strand at 1227.772 kb on + strand at 1227.772 kb on + strand at 1227.773 kb on - strand at 1227.796 kb on - strand at 1227.796 kb on - strand at 1227.797 kb on + strand at 1227.798 kb on - strand at 1227.830 kb on + strand at 1227.908 kb on + strand at 1227.935 kb on - strand at 1228.078 kb on + strand at 1228.138 kb on + strand at 1228.231 kb on - strand, within Pf6N2E2_1054 at 1228.288 kb on + strand, within Pf6N2E2_1054 at 1228.288 kb on + strand, within Pf6N2E2_1054 at 1228.289 kb on - strand, within Pf6N2E2_1054 at 1228.321 kb on + strand, within Pf6N2E2_1054 at 1228.322 kb on - strand, within Pf6N2E2_1054 at 1228.335 kb on - strand, within Pf6N2E2_1054 at 1228.439 kb on + strand, within Pf6N2E2_1054 at 1228.440 kb on - strand, within Pf6N2E2_1054 at 1228.440 kb on - strand, within Pf6N2E2_1054 at 1228.444 kb on - strand, within Pf6N2E2_1054 at 1228.444 kb on - strand, within Pf6N2E2_1054 at 1228.811 kb on + strand, within Pf6N2E2_1054 at 1228.811 kb on + strand, within Pf6N2E2_1054 at 1228.869 kb on - strand, within Pf6N2E2_1054 at 1229.011 kb on + strand, within Pf6N2E2_1054 at 1229.012 kb on - strand, within Pf6N2E2_1054 at 1229.245 kb on - strand at 1229.348 kb on + strand at 1229.621 kb on + strand, within Pf6N2E2_1055 at 1229.621 kb on + strand, within Pf6N2E2_1055 at 1229.621 kb on + strand, within Pf6N2E2_1055 at 1229.622 kb on - strand, within Pf6N2E2_1055 at 1229.687 kb on - strand, within Pf6N2E2_1055 at 1229.687 kb on - strand, within Pf6N2E2_1055 at 1229.804 kb on + strand, within Pf6N2E2_1055 at 1229.901 kb on + strand, within Pf6N2E2_1055 at 1229.901 kb on + strand, within Pf6N2E2_1055 at 1229.902 kb on - strand, within Pf6N2E2_1055 at 1229.902 kb on - strand, within Pf6N2E2_1055 at 1229.930 kb on + strand, within Pf6N2E2_1055 at 1229.930 kb on + strand, within Pf6N2E2_1055 at 1229.931 kb on - strand, within Pf6N2E2_1055 at 1229.931 kb on - strand, within Pf6N2E2_1055 at 1229.963 kb on - strand, within Pf6N2E2_1055 at 1229.963 kb on - strand, within Pf6N2E2_1055 at 1230.016 kb on + strand, within Pf6N2E2_1055 at 1230.016 kb on + strand, within Pf6N2E2_1055 at 1230.016 kb on + strand, within Pf6N2E2_1055 at 1230.016 kb on + strand, within Pf6N2E2_1055 at 1230.017 kb on - strand, within Pf6N2E2_1055 at 1230.017 kb on - strand, within Pf6N2E2_1055 at 1230.017 kb on - strand, within Pf6N2E2_1055 at 1230.254 kb on + strand, within Pf6N2E2_1055 at 1230.255 kb on - strand, within Pf6N2E2_1055 at 1230.255 kb on - strand, within Pf6N2E2_1055 at 1230.255 kb on - strand, within Pf6N2E2_1055 at 1230.258 kb on + strand, within Pf6N2E2_1055 at 1230.259 kb on - strand, within Pf6N2E2_1055 at 1230.259 kb on - strand, within Pf6N2E2_1055 at 1230.259 kb on - strand, within Pf6N2E2_1055 at 1230.259 kb on - strand, within Pf6N2E2_1055 at 1230.259 kb on - strand, within Pf6N2E2_1055
Per-strain Table
Position Strand Gene LocusTag Fraction DEANONOate 0.000625 M remove 1,227,136 + -0.2 1,227,136 + -1.4 1,227,137 - +1.1 1,227,137 - +1.9 1,227,147 + -0.2 1,227,147 + +0.4 1,227,437 - Pf6N2E2_1053 0.65 +0.4 1,227,519 + Pf6N2E2_1053 0.83 -3.0 1,227,731 - +1.3 1,227,772 + -0.6 1,227,772 + -0.6 1,227,773 - +0.2 1,227,796 - -0.3 1,227,796 - -0.6 1,227,797 + -0.6 1,227,798 - +0.7 1,227,830 + -0.8 1,227,908 + +1.6 1,227,935 - -0.1 1,228,078 + -0.0 1,228,138 + +0.0 1,228,231 - Pf6N2E2_1054 0.11 +0.5 1,228,288 + Pf6N2E2_1054 0.15 +0.5 1,228,288 + Pf6N2E2_1054 0.15 +0.2 1,228,289 - Pf6N2E2_1054 0.16 -0.7 1,228,321 + Pf6N2E2_1054 0.18 -1.0 1,228,322 - Pf6N2E2_1054 0.18 -0.6 1,228,335 - Pf6N2E2_1054 0.19 -1.4 1,228,439 + Pf6N2E2_1054 0.27 -2.0 1,228,440 - Pf6N2E2_1054 0.27 -1.2 1,228,440 - Pf6N2E2_1054 0.27 -0.6 1,228,444 - Pf6N2E2_1054 0.28 -0.4 1,228,444 - Pf6N2E2_1054 0.28 +1.0 1,228,811 + Pf6N2E2_1054 0.57 -0.5 1,228,811 + Pf6N2E2_1054 0.57 -0.6 1,228,869 - Pf6N2E2_1054 0.61 +0.7 1,229,011 + Pf6N2E2_1054 0.72 -0.8 1,229,012 - Pf6N2E2_1054 0.72 -0.5 1,229,245 - +2.3 1,229,348 + +0.6 1,229,621 + Pf6N2E2_1055 0.12 +0.4 1,229,621 + Pf6N2E2_1055 0.12 -0.6 1,229,621 + Pf6N2E2_1055 0.12 -1.6 1,229,622 - Pf6N2E2_1055 0.12 +0.5 1,229,687 - Pf6N2E2_1055 0.19 +0.8 1,229,687 - Pf6N2E2_1055 0.19 -0.2 1,229,804 + Pf6N2E2_1055 0.32 +1.0 1,229,901 + Pf6N2E2_1055 0.42 +0.0 1,229,901 + Pf6N2E2_1055 0.42 +0.4 1,229,902 - Pf6N2E2_1055 0.42 +1.6 1,229,902 - Pf6N2E2_1055 0.42 +2.3 1,229,930 + Pf6N2E2_1055 0.45 -1.5 1,229,930 + Pf6N2E2_1055 0.45 +0.0 1,229,931 - Pf6N2E2_1055 0.46 -0.6 1,229,931 - Pf6N2E2_1055 0.46 +0.8 1,229,963 - Pf6N2E2_1055 0.49 +1.1 1,229,963 - Pf6N2E2_1055 0.49 -0.0 1,230,016 + Pf6N2E2_1055 0.55 +0.4 1,230,016 + Pf6N2E2_1055 0.55 +0.9 1,230,016 + Pf6N2E2_1055 0.55 -4.3 1,230,016 + Pf6N2E2_1055 0.55 -3.0 1,230,017 - Pf6N2E2_1055 0.55 -0.4 1,230,017 - Pf6N2E2_1055 0.55 -0.2 1,230,017 - Pf6N2E2_1055 0.55 +1.0 1,230,254 + Pf6N2E2_1055 0.81 +0.0 1,230,255 - Pf6N2E2_1055 0.81 +0.3 1,230,255 - Pf6N2E2_1055 0.81 +1.0 1,230,255 - Pf6N2E2_1055 0.81 +1.5 1,230,258 + Pf6N2E2_1055 0.81 -1.4 1,230,259 - Pf6N2E2_1055 0.81 +2.2 1,230,259 - Pf6N2E2_1055 0.81 -0.5 1,230,259 - Pf6N2E2_1055 0.81 +0.2 1,230,259 - Pf6N2E2_1055 0.81 +0.5 1,230,259 - Pf6N2E2_1055 0.81 +0.2
Or see this region's nucleotide sequence