Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_920

Experiment: Cadmium chloride hemipentahydrate 0.000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt Pf6N2E2_920 - Carbonic anhydrase (EC 4.2.1.1), at 1,082,851 to 1,083,444 _920 Position (kb) 1082 1083 1084Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1081.903 kb on + strandat 1081.937 kb on + strandat 1081.938 kb on - strandat 1081.950 kb on - strandat 1081.954 kb on - strandat 1081.978 kb on - strandat 1082.826 kb on + strandat 1082.826 kb on + strandat 1082.826 kb on + strandat 1082.827 kb on - strandat 1082.827 kb on - strandat 1082.827 kb on - strandat 1082.827 kb on - strandat 1082.894 kb on - strandat 1082.894 kb on - strandat 1082.894 kb on - strandat 1082.985 kb on - strand, within Pf6N2E2_920at 1083.066 kb on + strand, within Pf6N2E2_920at 1083.066 kb on + strand, within Pf6N2E2_920at 1083.066 kb on + strand, within Pf6N2E2_920at 1083.144 kb on + strand, within Pf6N2E2_920at 1083.144 kb on + strand, within Pf6N2E2_920at 1083.145 kb on - strand, within Pf6N2E2_920at 1083.145 kb on - strand, within Pf6N2E2_920at 1083.164 kb on + strand, within Pf6N2E2_920at 1083.195 kb on + strand, within Pf6N2E2_920at 1083.196 kb on - strand, within Pf6N2E2_920at 1083.252 kb on + strand, within Pf6N2E2_920at 1083.313 kb on + strand, within Pf6N2E2_920at 1083.313 kb on + strand, within Pf6N2E2_920at 1083.313 kb on + strand, within Pf6N2E2_920at 1083.314 kb on - strand, within Pf6N2E2_920at 1083.314 kb on - strand, within Pf6N2E2_920at 1083.367 kb on + strand, within Pf6N2E2_920at 1083.367 kb on + strand, within Pf6N2E2_920at 1083.368 kb on - strand, within Pf6N2E2_920at 1083.368 kb on - strand, within Pf6N2E2_920at 1083.379 kb on + strand, within Pf6N2E2_920at 1083.380 kb on - strand, within Pf6N2E2_920at 1083.380 kb on - strand, within Pf6N2E2_920at 1083.380 kb on - strand, within Pf6N2E2_920at 1083.411 kb on - strandat 1083.484 kb on - strandat 1083.611 kb on - strandat 1083.611 kb on - strandat 1083.615 kb on + strandat 1083.615 kb on + strandat 1083.615 kb on + strandat 1083.623 kb on + strandat 1083.623 kb on + strandat 1083.691 kb on - strandat 1083.726 kb on + strandat 1083.727 kb on - strandat 1083.728 kb on + strandat 1083.728 kb on + strandat 1083.729 kb on - strandat 1083.731 kb on + strandat 1083.731 kb on + strandat 1083.732 kb on - strandat 1083.794 kb on + strandat 1083.794 kb on + strandat 1083.795 kb on - strandat 1083.922 kb on + strandat 1083.923 kb on - strandat 1083.923 kb on - strandat 1083.923 kb on - strandat 1083.923 kb on - strandat 1083.926 kb on + strandat 1083.927 kb on - strandat 1084.023 kb on - strandat 1084.085 kb on - strandat 1084.102 kb on + strandat 1084.122 kb on + strandat 1084.122 kb on + strandat 1084.228 kb on + strandat 1084.229 kb on - strandat 1084.232 kb on + strandat 1084.232 kb on + strandat 1084.233 kb on - strandat 1084.293 kb on + strandat 1084.372 kb on - strandat 1084.408 kb on - strandat 1084.408 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium chloride hemipentahydrate 0.000015625 M
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1,081,903 + +0.4
1,081,937 + +0.1
1,081,938 - -0.5
1,081,950 - +2.5
1,081,954 - -1.0
1,081,978 - -0.3
1,082,826 + +0.0
1,082,826 + -0.2
1,082,826 + +0.5
1,082,827 - +1.6
1,082,827 - +0.1
1,082,827 - -3.9
1,082,827 - +0.9
1,082,894 - -1.7
1,082,894 - -0.5
1,082,894 - -0.3
1,082,985 - Pf6N2E2_920 0.23 -0.7
1,083,066 + Pf6N2E2_920 0.36 -0.1
1,083,066 + Pf6N2E2_920 0.36 +0.6
1,083,066 + Pf6N2E2_920 0.36 -0.3
1,083,144 + Pf6N2E2_920 0.49 -0.7
1,083,144 + Pf6N2E2_920 0.49 -0.1
1,083,145 - Pf6N2E2_920 0.49 +0.0
1,083,145 - Pf6N2E2_920 0.49 +0.1
1,083,164 + Pf6N2E2_920 0.53 -0.7
1,083,195 + Pf6N2E2_920 0.58 +0.9
1,083,196 - Pf6N2E2_920 0.58 +0.6
1,083,252 + Pf6N2E2_920 0.68 -0.3
1,083,313 + Pf6N2E2_920 0.78 -0.5
1,083,313 + Pf6N2E2_920 0.78 +1.1
1,083,313 + Pf6N2E2_920 0.78 -0.4
1,083,314 - Pf6N2E2_920 0.78 -2.3
1,083,314 - Pf6N2E2_920 0.78 -0.1
1,083,367 + Pf6N2E2_920 0.87 -0.0
1,083,367 + Pf6N2E2_920 0.87 -0.5
1,083,368 - Pf6N2E2_920 0.87 +0.2
1,083,368 - Pf6N2E2_920 0.87 -0.1
1,083,379 + Pf6N2E2_920 0.89 -0.2
1,083,380 - Pf6N2E2_920 0.89 +0.5
1,083,380 - Pf6N2E2_920 0.89 +0.4
1,083,380 - Pf6N2E2_920 0.89 -0.1
1,083,411 - +0.2
1,083,484 - +0.3
1,083,611 - +0.5
1,083,611 - -0.5
1,083,615 + +0.6
1,083,615 + +0.0
1,083,615 + +0.5
1,083,623 + +0.0
1,083,623 + +1.1
1,083,691 - -1.0
1,083,726 + -0.2
1,083,727 - -0.7
1,083,728 + +1.2
1,083,728 + -0.5
1,083,729 - -2.1
1,083,731 + -0.5
1,083,731 + +1.3
1,083,732 - -1.5
1,083,794 + +1.0
1,083,794 + +0.3
1,083,795 - -0.3
1,083,922 + +1.6
1,083,923 - -0.1
1,083,923 - +0.5
1,083,923 - +1.0
1,083,923 - -0.5
1,083,926 + +0.8
1,083,927 - -0.5
1,084,023 - +0.3
1,084,085 - -0.6
1,084,102 + -1.0
1,084,122 + +0.9
1,084,122 + +0.5
1,084,228 + +0.7
1,084,229 - +1.3
1,084,232 + -1.0
1,084,232 + -1.2
1,084,233 - -1.0
1,084,293 + +0.8
1,084,372 - -0.4
1,084,408 - -0.2
1,084,408 - +1.4

Or see this region's nucleotide sequence