Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_637

Experiment: Cadmium chloride hemipentahydrate 0.000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_635 and Pf6N2E2_636 are separated by 293 nucleotidesPf6N2E2_636 and Pf6N2E2_637 are separated by 125 nucleotidesPf6N2E2_637 and Pf6N2E2_638 are separated by 195 nucleotidesPf6N2E2_638 and Pf6N2E2_639 are separated by 180 nucleotides Pf6N2E2_635 - hypothetical protein, at 727,734 to 728,138 _635 Pf6N2E2_636 - FIG00954888: hypothetical protein, at 728,432 to 728,725 _636 Pf6N2E2_637 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 728,851 to 730,284 _637 Pf6N2E2_638 - 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein, at 730,480 to 730,920 _638 Pf6N2E2_639 - FIG01285020: hypothetical protein, at 731,101 to 731,442 _639 Position (kb) 728 729 730 731Strain fitness (log2 ratio) -2 -1 0 1at 727.856 kb on - strand, within Pf6N2E2_635at 727.876 kb on + strand, within Pf6N2E2_635at 727.877 kb on - strand, within Pf6N2E2_635at 727.877 kb on - strand, within Pf6N2E2_635at 727.930 kb on + strand, within Pf6N2E2_635at 727.930 kb on + strand, within Pf6N2E2_635at 727.930 kb on + strand, within Pf6N2E2_635at 727.930 kb on + strand, within Pf6N2E2_635at 727.931 kb on - strand, within Pf6N2E2_635at 727.931 kb on - strand, within Pf6N2E2_635at 727.931 kb on - strand, within Pf6N2E2_635at 727.931 kb on - strand, within Pf6N2E2_635at 727.931 kb on - strand, within Pf6N2E2_635at 727.984 kb on + strand, within Pf6N2E2_635at 728.046 kb on + strand, within Pf6N2E2_635at 728.046 kb on + strand, within Pf6N2E2_635at 728.046 kb on + strand, within Pf6N2E2_635at 728.047 kb on - strand, within Pf6N2E2_635at 728.083 kb on + strand, within Pf6N2E2_635at 728.084 kb on - strand, within Pf6N2E2_635at 728.196 kb on + strandat 728.196 kb on + strandat 728.197 kb on - strandat 728.244 kb on + strandat 728.424 kb on - strandat 728.449 kb on + strandat 728.450 kb on - strandat 728.450 kb on - strandat 728.450 kb on - strandat 728.602 kb on + strand, within Pf6N2E2_636at 728.602 kb on + strand, within Pf6N2E2_636at 728.602 kb on + strand, within Pf6N2E2_636at 728.602 kb on + strand, within Pf6N2E2_636at 728.602 kb on + strand, within Pf6N2E2_636at 728.603 kb on - strand, within Pf6N2E2_636at 728.604 kb on + strand, within Pf6N2E2_636at 728.604 kb on + strand, within Pf6N2E2_636at 728.604 kb on + strand, within Pf6N2E2_636at 728.604 kb on + strand, within Pf6N2E2_636at 728.605 kb on - strand, within Pf6N2E2_636at 728.605 kb on - strand, within Pf6N2E2_636at 728.605 kb on - strand, within Pf6N2E2_636at 728.605 kb on - strand, within Pf6N2E2_636at 728.605 kb on - strand, within Pf6N2E2_636at 728.605 kb on - strand, within Pf6N2E2_636at 728.699 kb on + strandat 728.700 kb on - strandat 728.871 kb on + strandat 728.982 kb on - strandat 729.058 kb on - strand, within Pf6N2E2_637at 729.344 kb on + strand, within Pf6N2E2_637at 729.453 kb on - strand, within Pf6N2E2_637at 729.531 kb on - strand, within Pf6N2E2_637at 729.825 kb on - strand, within Pf6N2E2_637at 729.825 kb on - strand, within Pf6N2E2_637at 730.061 kb on + strand, within Pf6N2E2_637at 730.061 kb on + strand, within Pf6N2E2_637at 730.061 kb on + strand, within Pf6N2E2_637at 730.062 kb on - strand, within Pf6N2E2_637at 730.062 kb on - strand, within Pf6N2E2_637at 730.101 kb on - strand, within Pf6N2E2_637at 730.101 kb on - strand, within Pf6N2E2_637at 730.115 kb on + strand, within Pf6N2E2_637at 730.116 kb on - strand, within Pf6N2E2_637at 730.232 kb on + strandat 730.233 kb on - strandat 730.233 kb on - strandat 730.233 kb on - strandat 730.358 kb on + strandat 730.359 kb on - strandat 730.426 kb on + strandat 730.498 kb on + strandat 730.498 kb on + strandat 730.501 kb on + strandat 730.501 kb on + strandat 730.502 kb on - strandat 730.502 kb on - strandat 730.502 kb on - strandat 730.502 kb on - strandat 730.502 kb on - strandat 730.801 kb on + strand, within Pf6N2E2_638at 730.801 kb on + strand, within Pf6N2E2_638at 730.802 kb on - strand, within Pf6N2E2_638at 730.802 kb on - strand, within Pf6N2E2_638at 731.029 kb on - strandat 731.103 kb on - strandat 731.169 kb on + strand, within Pf6N2E2_639at 731.170 kb on - strand, within Pf6N2E2_639at 731.170 kb on - strand, within Pf6N2E2_639at 731.170 kb on - strand, within Pf6N2E2_639at 731.170 kb on - strand, within Pf6N2E2_639

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium chloride hemipentahydrate 0.000015625 M
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727,856 - Pf6N2E2_635 0.30 +0.6
727,876 + Pf6N2E2_635 0.35 +0.0
727,877 - Pf6N2E2_635 0.35 -0.7
727,877 - Pf6N2E2_635 0.35 -0.4
727,930 + Pf6N2E2_635 0.48 -0.1
727,930 + Pf6N2E2_635 0.48 +0.3
727,930 + Pf6N2E2_635 0.48 -1.2
727,930 + Pf6N2E2_635 0.48 -0.3
727,931 - Pf6N2E2_635 0.49 +0.5
727,931 - Pf6N2E2_635 0.49 +0.7
727,931 - Pf6N2E2_635 0.49 +0.4
727,931 - Pf6N2E2_635 0.49 +0.2
727,931 - Pf6N2E2_635 0.49 -0.2
727,984 + Pf6N2E2_635 0.62 +0.2
728,046 + Pf6N2E2_635 0.77 +0.5
728,046 + Pf6N2E2_635 0.77 +0.7
728,046 + Pf6N2E2_635 0.77 -0.4
728,047 - Pf6N2E2_635 0.77 -0.3
728,083 + Pf6N2E2_635 0.86 -0.8
728,084 - Pf6N2E2_635 0.86 -0.7
728,196 + +0.4
728,196 + -0.1
728,197 - -0.1
728,244 + -0.2
728,424 - +1.2
728,449 + +0.8
728,450 - -1.4
728,450 - +0.4
728,450 - -0.2
728,602 + Pf6N2E2_636 0.58 -0.0
728,602 + Pf6N2E2_636 0.58 -0.7
728,602 + Pf6N2E2_636 0.58 -0.5
728,602 + Pf6N2E2_636 0.58 -1.4
728,602 + Pf6N2E2_636 0.58 -2.0
728,603 - Pf6N2E2_636 0.58 +0.2
728,604 + Pf6N2E2_636 0.59 +0.8
728,604 + Pf6N2E2_636 0.59 -0.6
728,604 + Pf6N2E2_636 0.59 -0.3
728,604 + Pf6N2E2_636 0.59 -0.1
728,605 - Pf6N2E2_636 0.59 -0.7
728,605 - Pf6N2E2_636 0.59 -0.8
728,605 - Pf6N2E2_636 0.59 +0.4
728,605 - Pf6N2E2_636 0.59 +0.8
728,605 - Pf6N2E2_636 0.59 -0.4
728,605 - Pf6N2E2_636 0.59 -0.1
728,699 + -0.0
728,700 - -0.2
728,871 + +1.4
728,982 - +0.5
729,058 - Pf6N2E2_637 0.14 +0.4
729,344 + Pf6N2E2_637 0.34 -0.2
729,453 - Pf6N2E2_637 0.42 +0.2
729,531 - Pf6N2E2_637 0.47 +0.3
729,825 - Pf6N2E2_637 0.68 -0.5
729,825 - Pf6N2E2_637 0.68 -0.1
730,061 + Pf6N2E2_637 0.84 -1.0
730,061 + Pf6N2E2_637 0.84 -0.3
730,061 + Pf6N2E2_637 0.84 +0.5
730,062 - Pf6N2E2_637 0.84 +0.3
730,062 - Pf6N2E2_637 0.84 -0.2
730,101 - Pf6N2E2_637 0.87 -0.4
730,101 - Pf6N2E2_637 0.87 -0.4
730,115 + Pf6N2E2_637 0.88 +0.8
730,116 - Pf6N2E2_637 0.88 +1.2
730,232 + +0.6
730,233 - -0.0
730,233 - -0.4
730,233 - -1.1
730,358 + -0.7
730,359 - -1.0
730,426 + -1.0
730,498 + -1.1
730,498 + -0.3
730,501 + -0.7
730,501 + -1.5
730,502 - -0.0
730,502 - +0.6
730,502 - +0.1
730,502 - +0.3
730,502 - -0.4
730,801 + Pf6N2E2_638 0.73 -0.7
730,801 + Pf6N2E2_638 0.73 +0.3
730,802 - Pf6N2E2_638 0.73 +0.3
730,802 - Pf6N2E2_638 0.73 +0.1
731,029 - -0.1
731,103 - -1.8
731,169 + Pf6N2E2_639 0.20 -0.3
731,170 - Pf6N2E2_639 0.20 +0.5
731,170 - Pf6N2E2_639 0.20 +0.0
731,170 - Pf6N2E2_639 0.20 -0.4
731,170 - Pf6N2E2_639 0.20 -0.3

Or see this region's nucleotide sequence