Experiment: Cadmium chloride hemipentahydrate 0.000015625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_481 and Pf6N2E2_482 are separated by 192 nucleotides Pf6N2E2_482 and Pf6N2E2_483 are separated by 151 nucleotides
Pf6N2E2_481 - branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) <small>(from data)</small>, at 547,221 to 548,456
_481
Pf6N2E2_482 - Transcriptional regulator BkdR of isoleucine and valine catabolism operon, at 548,649 to 549,137
_482
Pf6N2E2_483 - FIG146518: Zn-dependent hydrolases, including glyoxylases, at 549,289 to 550,152
_483
Position (kb) 548
549
550 Strain fitness (log2 ratio) -2
-1
0
1
2 at 547.945 kb on + strand, within Pf6N2E2_481 at 547.945 kb on + strand, within Pf6N2E2_481 at 547.945 kb on + strand, within Pf6N2E2_481 at 547.945 kb on + strand, within Pf6N2E2_481 at 547.946 kb on - strand, within Pf6N2E2_481 at 547.946 kb on - strand, within Pf6N2E2_481 at 547.946 kb on - strand, within Pf6N2E2_481 at 547.946 kb on - strand, within Pf6N2E2_481 at 547.957 kb on - strand, within Pf6N2E2_481 at 548.137 kb on + strand, within Pf6N2E2_481 at 548.138 kb on - strand, within Pf6N2E2_481 at 548.185 kb on + strand, within Pf6N2E2_481 at 548.185 kb on + strand at 548.186 kb on - strand, within Pf6N2E2_481 at 548.345 kb on + strand at 548.377 kb on + strand at 548.378 kb on - strand at 548.464 kb on + strand at 548.465 kb on - strand at 548.465 kb on - strand at 548.465 kb on - strand at 548.489 kb on + strand at 548.502 kb on - strand at 548.537 kb on + strand at 548.538 kb on - strand at 548.548 kb on + strand at 548.549 kb on - strand at 548.549 kb on - strand at 548.829 kb on - strand, within Pf6N2E2_482 at 548.943 kb on + strand, within Pf6N2E2_482 at 548.943 kb on + strand, within Pf6N2E2_482 at 549.290 kb on + strand at 549.291 kb on - strand at 549.291 kb on - strand at 549.291 kb on - strand at 549.317 kb on + strand at 549.317 kb on + strand at 549.318 kb on - strand at 549.533 kb on + strand, within Pf6N2E2_483 at 549.548 kb on + strand, within Pf6N2E2_483 at 549.548 kb on + strand, within Pf6N2E2_483 at 549.548 kb on + strand, within Pf6N2E2_483 at 549.548 kb on + strand, within Pf6N2E2_483 at 549.549 kb on - strand, within Pf6N2E2_483 at 549.549 kb on - strand, within Pf6N2E2_483 at 549.549 kb on - strand, within Pf6N2E2_483 at 549.596 kb on + strand, within Pf6N2E2_483 at 549.597 kb on - strand, within Pf6N2E2_483 at 549.597 kb on - strand, within Pf6N2E2_483 at 549.698 kb on + strand, within Pf6N2E2_483 at 549.911 kb on + strand, within Pf6N2E2_483 at 549.912 kb on - strand at 549.912 kb on - strand, within Pf6N2E2_483 at 550.100 kb on + strand at 550.100 kb on + strand at 550.100 kb on + strand at 550.100 kb on + strand at 550.100 kb on + strand at 550.101 kb on - strand at 550.101 kb on - strand at 550.101 kb on - strand at 550.106 kb on + strand at 550.106 kb on + strand at 550.106 kb on + strand at 550.106 kb on + strand at 550.106 kb on + strand at 550.107 kb on - strand at 550.107 kb on - strand at 550.107 kb on - strand at 550.107 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium chloride hemipentahydrate 0.000015625 M remove 547,945 + Pf6N2E2_481 0.59 -0.6 547,945 + Pf6N2E2_481 0.59 -0.4 547,945 + Pf6N2E2_481 0.59 -0.7 547,945 + Pf6N2E2_481 0.59 +1.9 547,946 - Pf6N2E2_481 0.59 -0.8 547,946 - Pf6N2E2_481 0.59 +0.1 547,946 - Pf6N2E2_481 0.59 +0.5 547,946 - Pf6N2E2_481 0.59 -1.0 547,957 - Pf6N2E2_481 0.60 -1.5 548,137 + Pf6N2E2_481 0.74 -0.2 548,138 - Pf6N2E2_481 0.74 +0.6 548,185 + Pf6N2E2_481 0.78 +1.3 548,185 + -1.3 548,186 - Pf6N2E2_481 0.78 -0.1 548,345 + +0.2 548,377 + -0.9 548,378 - -0.8 548,464 + -0.1 548,465 - -0.2 548,465 - +0.4 548,465 - +0.3 548,489 + -1.0 548,502 - -0.5 548,537 + +0.3 548,538 - +0.3 548,548 + -0.6 548,549 - +2.3 548,549 - +1.1 548,829 - Pf6N2E2_482 0.37 -1.4 548,943 + Pf6N2E2_482 0.60 -0.8 548,943 + Pf6N2E2_482 0.60 -0.2 549,290 + +0.2 549,291 - -0.2 549,291 - +0.4 549,291 - +0.2 549,317 + +0.7 549,317 + +1.1 549,318 - +0.4 549,533 + Pf6N2E2_483 0.28 -0.2 549,548 + Pf6N2E2_483 0.30 +0.0 549,548 + Pf6N2E2_483 0.30 -0.0 549,548 + Pf6N2E2_483 0.30 -0.1 549,548 + Pf6N2E2_483 0.30 -0.1 549,549 - Pf6N2E2_483 0.30 +0.8 549,549 - Pf6N2E2_483 0.30 -0.2 549,549 - Pf6N2E2_483 0.30 -0.6 549,596 + Pf6N2E2_483 0.36 +0.8 549,597 - Pf6N2E2_483 0.36 +0.7 549,597 - Pf6N2E2_483 0.36 +0.8 549,698 + Pf6N2E2_483 0.47 +0.8 549,911 + Pf6N2E2_483 0.72 +0.7 549,912 - -0.5 549,912 - Pf6N2E2_483 0.72 +0.1 550,100 + +0.2 550,100 + -0.1 550,100 + +0.5 550,100 + -0.3 550,100 + -0.7 550,101 - -0.0 550,101 - +0.9 550,101 - -2.0 550,106 + +0.1 550,106 + -0.1 550,106 + -0.5 550,106 + +1.0 550,106 + +0.3 550,107 - +0.1 550,107 - -0.0 550,107 - +0.4 550,107 - -0.4
Or see this region's nucleotide sequence