Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4096

Experiment: Cadmium chloride hemipentahydrate 0.000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4095 and Pf6N2E2_4096 are separated by 88 nucleotidesPf6N2E2_4096 and Pf6N2E2_4097 are separated by 162 nucleotides Pf6N2E2_4095 - Carbonic anhydrase (EC 4.2.1.1), at 4,774,897 to 4,775,628 _4095 Pf6N2E2_4096 - Sulfate transporter family protein in cluster with carbonic anhydrase, at 4,775,717 to 4,777,243 _4096 Pf6N2E2_4097 - FIG00953365: hypothetical protein, at 4,777,406 to 4,778,056 _4097 Position (kb) 4775 4776 4777 4778Strain fitness (log2 ratio) -1 0 1 2 3at 4774.776 kb on + strandat 4774.776 kb on + strandat 4774.776 kb on + strandat 4774.801 kb on + strandat 4774.802 kb on - strandat 4774.816 kb on - strandat 4774.911 kb on + strandat 4774.912 kb on - strandat 4774.980 kb on + strand, within Pf6N2E2_4095at 4774.980 kb on + strand, within Pf6N2E2_4095at 4774.980 kb on + strand, within Pf6N2E2_4095at 4774.980 kb on + strand, within Pf6N2E2_4095at 4774.981 kb on - strand, within Pf6N2E2_4095at 4774.981 kb on - strand, within Pf6N2E2_4095at 4774.981 kb on - strand, within Pf6N2E2_4095at 4774.981 kb on - strand, within Pf6N2E2_4095at 4774.981 kb on - strand, within Pf6N2E2_4095at 4774.981 kb on - strand, within Pf6N2E2_4095at 4774.981 kb on - strand, within Pf6N2E2_4095at 4775.124 kb on + strand, within Pf6N2E2_4095at 4775.124 kb on + strand, within Pf6N2E2_4095at 4775.124 kb on + strand, within Pf6N2E2_4095at 4775.124 kb on + strand, within Pf6N2E2_4095at 4775.124 kb on + strand, within Pf6N2E2_4095at 4775.124 kb on + strand, within Pf6N2E2_4095at 4775.124 kb on + strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.180 kb on - strand, within Pf6N2E2_4095at 4775.180 kb on - strand, within Pf6N2E2_4095at 4775.218 kb on + strand, within Pf6N2E2_4095at 4775.219 kb on - strandat 4775.226 kb on - strand, within Pf6N2E2_4095at 4775.518 kb on + strand, within Pf6N2E2_4095at 4775.518 kb on + strand, within Pf6N2E2_4095at 4775.518 kb on + strand, within Pf6N2E2_4095at 4775.519 kb on - strand, within Pf6N2E2_4095at 4775.519 kb on - strand, within Pf6N2E2_4095at 4775.519 kb on - strand, within Pf6N2E2_4095at 4775.519 kb on - strand, within Pf6N2E2_4095at 4775.519 kb on - strand, within Pf6N2E2_4095at 4775.548 kb on + strand, within Pf6N2E2_4095at 4775.548 kb on + strand, within Pf6N2E2_4095at 4775.549 kb on - strand, within Pf6N2E2_4095at 4775.549 kb on - strand, within Pf6N2E2_4095at 4775.549 kb on - strand, within Pf6N2E2_4095at 4775.626 kb on + strandat 4775.627 kb on - strandat 4775.627 kb on - strandat 4775.636 kb on + strandat 4775.730 kb on + strandat 4775.730 kb on + strandat 4775.730 kb on + strandat 4775.731 kb on - strandat 4775.731 kb on - strandat 4775.754 kb on + strandat 4775.754 kb on + strandat 4775.754 kb on + strandat 4775.754 kb on + strandat 4775.755 kb on - strandat 4775.755 kb on - strandat 4775.755 kb on - strandat 4775.755 kb on - strandat 4775.755 kb on - strandat 4776.065 kb on + strand, within Pf6N2E2_4096at 4776.065 kb on + strand, within Pf6N2E2_4096at 4776.066 kb on - strand, within Pf6N2E2_4096at 4776.066 kb on - strand, within Pf6N2E2_4096at 4776.099 kb on + strand, within Pf6N2E2_4096at 4776.099 kb on + strand, within Pf6N2E2_4096at 4776.099 kb on + strand, within Pf6N2E2_4096at 4776.099 kb on + strand, within Pf6N2E2_4096at 4776.099 kb on + strand, within Pf6N2E2_4096at 4776.100 kb on - strand, within Pf6N2E2_4096at 4776.100 kb on - strand, within Pf6N2E2_4096at 4776.100 kb on - strand, within Pf6N2E2_4096at 4776.100 kb on - strand, within Pf6N2E2_4096at 4776.340 kb on - strand, within Pf6N2E2_4096at 4776.511 kb on + strand, within Pf6N2E2_4096at 4776.511 kb on + strand, within Pf6N2E2_4096at 4776.511 kb on + strand, within Pf6N2E2_4096at 4776.512 kb on - strand, within Pf6N2E2_4096at 4776.512 kb on - strand, within Pf6N2E2_4096at 4776.512 kb on - strand, within Pf6N2E2_4096at 4776.562 kb on + strand, within Pf6N2E2_4096at 4776.563 kb on - strand, within Pf6N2E2_4096at 4776.563 kb on - strand, within Pf6N2E2_4096at 4776.649 kb on + strand, within Pf6N2E2_4096at 4776.761 kb on + strand, within Pf6N2E2_4096at 4776.761 kb on + strand, within Pf6N2E2_4096at 4776.761 kb on + strand, within Pf6N2E2_4096at 4776.762 kb on - strand, within Pf6N2E2_4096at 4776.762 kb on - strand, within Pf6N2E2_4096at 4777.047 kb on + strand, within Pf6N2E2_4096at 4777.047 kb on + strand, within Pf6N2E2_4096at 4777.048 kb on - strand, within Pf6N2E2_4096at 4777.048 kb on - strand, within Pf6N2E2_4096at 4777.091 kb on + strandat 4777.091 kb on + strandat 4777.091 kb on + strandat 4777.091 kb on + strandat 4777.092 kb on - strandat 4777.092 kb on - strandat 4777.092 kb on - strandat 4777.092 kb on - strandat 4777.092 kb on - strandat 4777.388 kb on - strandat 4777.388 kb on - strandat 4777.496 kb on - strand, within Pf6N2E2_4097at 4777.520 kb on + strand, within Pf6N2E2_4097at 4777.521 kb on - strand, within Pf6N2E2_4097at 4777.681 kb on + strand, within Pf6N2E2_4097at 4777.681 kb on + strand, within Pf6N2E2_4097at 4777.681 kb on + strand, within Pf6N2E2_4097at 4777.681 kb on + strand, within Pf6N2E2_4097at 4777.681 kb on + strand, within Pf6N2E2_4097at 4777.681 kb on + strand, within Pf6N2E2_4097at 4777.681 kb on + strand, within Pf6N2E2_4097at 4777.681 kb on + strand, within Pf6N2E2_4097at 4777.682 kb on - strand, within Pf6N2E2_4097at 4777.682 kb on - strand, within Pf6N2E2_4097at 4777.682 kb on - strand, within Pf6N2E2_4097at 4777.683 kb on + strand, within Pf6N2E2_4097at 4777.683 kb on + strand, within Pf6N2E2_4097at 4777.683 kb on + strand, within Pf6N2E2_4097at 4777.683 kb on + strand, within Pf6N2E2_4097at 4777.683 kb on + strand, within Pf6N2E2_4097at 4777.683 kb on + strand, within Pf6N2E2_4097at 4777.683 kb on + strand, within Pf6N2E2_4097at 4777.684 kb on - strand, within Pf6N2E2_4097at 4777.684 kb on - strand, within Pf6N2E2_4097at 4777.684 kb on - strand, within Pf6N2E2_4097at 4777.684 kb on - strand, within Pf6N2E2_4097at 4777.684 kb on - strand, within Pf6N2E2_4097at 4777.684 kb on - strand, within Pf6N2E2_4097at 4777.684 kb on - strand, within Pf6N2E2_4097at 4777.684 kb on - strand, within Pf6N2E2_4097at 4777.684 kb on - strand, within Pf6N2E2_4097at 4777.722 kb on + strand, within Pf6N2E2_4097at 4777.722 kb on + strand, within Pf6N2E2_4097at 4777.788 kb on + strand, within Pf6N2E2_4097at 4777.788 kb on + strand, within Pf6N2E2_4097at 4777.789 kb on - strand, within Pf6N2E2_4097at 4777.789 kb on - strand, within Pf6N2E2_4097at 4777.789 kb on - strand, within Pf6N2E2_4097at 4777.878 kb on - strand, within Pf6N2E2_4097at 4777.878 kb on - strand, within Pf6N2E2_4097at 4777.890 kb on + strand, within Pf6N2E2_4097at 4777.890 kb on + strand, within Pf6N2E2_4097at 4777.890 kb on + strand, within Pf6N2E2_4097at 4777.891 kb on - strand, within Pf6N2E2_4097at 4778.087 kb on - strandat 4778.087 kb on - strandat 4778.097 kb on + strandat 4778.097 kb on + strandat 4778.098 kb on - strandat 4778.098 kb on - strandat 4778.098 kb on - strandat 4778.098 kb on - strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.103 kb on - strandat 4778.103 kb on - strandat 4778.103 kb on - strandat 4778.103 kb on - strandat 4778.103 kb on - strandat 4778.103 kb on - strandat 4778.103 kb on - strandat 4778.103 kb on - strandat 4778.103 kb on - strandat 4778.123 kb on + strandat 4778.123 kb on + strandat 4778.123 kb on + strandat 4778.123 kb on + strandat 4778.124 kb on - strandat 4778.130 kb on + strandat 4778.157 kb on + strandat 4778.218 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium chloride hemipentahydrate 0.000015625 M
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4,774,776 + +0.8
4,774,776 + +0.1
4,774,776 + -0.1
4,774,801 + +1.8
4,774,802 - +1.7
4,774,816 - +0.5
4,774,911 + +1.5
4,774,912 - +1.5
4,774,980 + Pf6N2E2_4095 0.11 +2.5
4,774,980 + Pf6N2E2_4095 0.11 +1.4
4,774,980 + Pf6N2E2_4095 0.11 +1.7
4,774,980 + Pf6N2E2_4095 0.11 -0.2
4,774,981 - Pf6N2E2_4095 0.11 +0.3
4,774,981 - Pf6N2E2_4095 0.11 +0.3
4,774,981 - Pf6N2E2_4095 0.11 +1.2
4,774,981 - Pf6N2E2_4095 0.11 +1.0
4,774,981 - Pf6N2E2_4095 0.11 +1.6
4,774,981 - Pf6N2E2_4095 0.11 +1.8
4,774,981 - Pf6N2E2_4095 0.11 +0.1
4,775,124 + Pf6N2E2_4095 0.31 +1.5
4,775,124 + Pf6N2E2_4095 0.31 +0.7
4,775,124 + Pf6N2E2_4095 0.31 +0.2
4,775,124 + Pf6N2E2_4095 0.31 +1.1
4,775,124 + Pf6N2E2_4095 0.31 +1.2
4,775,124 + Pf6N2E2_4095 0.31 +1.6
4,775,124 + Pf6N2E2_4095 0.31 +0.7
4,775,125 - Pf6N2E2_4095 0.31 +1.9
4,775,125 - Pf6N2E2_4095 0.31 +1.0
4,775,125 - Pf6N2E2_4095 0.31 +1.3
4,775,125 - Pf6N2E2_4095 0.31 +1.0
4,775,125 - Pf6N2E2_4095 0.31 +1.5
4,775,125 - Pf6N2E2_4095 0.31 +1.4
4,775,125 - Pf6N2E2_4095 0.31 +0.6
4,775,125 - Pf6N2E2_4095 0.31 +1.6
4,775,125 - Pf6N2E2_4095 0.31 +0.4
4,775,125 - Pf6N2E2_4095 0.31 +1.3
4,775,125 - Pf6N2E2_4095 0.31 +1.8
4,775,125 - Pf6N2E2_4095 0.31 +1.3
4,775,180 - Pf6N2E2_4095 0.39 +0.9
4,775,180 - Pf6N2E2_4095 0.39 +1.7
4,775,218 + Pf6N2E2_4095 0.44 +0.9
4,775,219 - +3.2
4,775,226 - Pf6N2E2_4095 0.45 +1.3
4,775,518 + Pf6N2E2_4095 0.85 +1.3
4,775,518 + Pf6N2E2_4095 0.85 +1.7
4,775,518 + Pf6N2E2_4095 0.85 +0.5
4,775,519 - Pf6N2E2_4095 0.85 +1.8
4,775,519 - Pf6N2E2_4095 0.85 +0.8
4,775,519 - Pf6N2E2_4095 0.85 +0.9
4,775,519 - Pf6N2E2_4095 0.85 +0.5
4,775,519 - Pf6N2E2_4095 0.85 -1.6
4,775,548 + Pf6N2E2_4095 0.89 +0.5
4,775,548 + Pf6N2E2_4095 0.89 +0.6
4,775,549 - Pf6N2E2_4095 0.89 +1.7
4,775,549 - Pf6N2E2_4095 0.89 +1.1
4,775,549 - Pf6N2E2_4095 0.89 +0.7
4,775,626 + +0.1
4,775,627 - +2.1
4,775,627 - +1.8
4,775,636 + -1.1
4,775,730 + +1.2
4,775,730 + +1.1
4,775,730 + +1.5
4,775,731 - +1.3
4,775,731 - +0.7
4,775,754 + +1.4
4,775,754 + +1.9
4,775,754 + +1.1
4,775,754 + +0.9
4,775,755 - +2.0
4,775,755 - +1.2
4,775,755 - +1.0
4,775,755 - +1.5
4,775,755 - +0.9
4,776,065 + Pf6N2E2_4096 0.23 +0.9
4,776,065 + Pf6N2E2_4096 0.23 +1.9
4,776,066 - Pf6N2E2_4096 0.23 +1.7
4,776,066 - Pf6N2E2_4096 0.23 +0.8
4,776,099 + Pf6N2E2_4096 0.25 +1.6
4,776,099 + Pf6N2E2_4096 0.25 +0.7
4,776,099 + Pf6N2E2_4096 0.25 +1.1
4,776,099 + Pf6N2E2_4096 0.25 +1.8
4,776,099 + Pf6N2E2_4096 0.25 +1.3
4,776,100 - Pf6N2E2_4096 0.25 +1.3
4,776,100 - Pf6N2E2_4096 0.25 +1.2
4,776,100 - Pf6N2E2_4096 0.25 +0.9
4,776,100 - Pf6N2E2_4096 0.25 +1.0
4,776,340 - Pf6N2E2_4096 0.41 +2.0
4,776,511 + Pf6N2E2_4096 0.52 +1.8
4,776,511 + Pf6N2E2_4096 0.52 +0.1
4,776,511 + Pf6N2E2_4096 0.52 +0.6
4,776,512 - Pf6N2E2_4096 0.52 +1.0
4,776,512 - Pf6N2E2_4096 0.52 +1.3
4,776,512 - Pf6N2E2_4096 0.52 +0.8
4,776,562 + Pf6N2E2_4096 0.55 +1.3
4,776,563 - Pf6N2E2_4096 0.55 -0.3
4,776,563 - Pf6N2E2_4096 0.55 +0.6
4,776,649 + Pf6N2E2_4096 0.61 +1.1
4,776,761 + Pf6N2E2_4096 0.68 +1.3
4,776,761 + Pf6N2E2_4096 0.68 +1.6
4,776,761 + Pf6N2E2_4096 0.68 +1.1
4,776,762 - Pf6N2E2_4096 0.68 +0.6
4,776,762 - Pf6N2E2_4096 0.68 +1.3
4,777,047 + Pf6N2E2_4096 0.87 +2.0
4,777,047 + Pf6N2E2_4096 0.87 +1.0
4,777,048 - Pf6N2E2_4096 0.87 +0.8
4,777,048 - Pf6N2E2_4096 0.87 +1.8
4,777,091 + +1.3
4,777,091 + +1.5
4,777,091 + +1.9
4,777,091 + -0.1
4,777,092 - +1.6
4,777,092 - +2.0
4,777,092 - +0.3
4,777,092 - +1.4
4,777,092 - +1.1
4,777,388 - -0.0
4,777,388 - -0.3
4,777,496 - Pf6N2E2_4097 0.14 +0.5
4,777,520 + Pf6N2E2_4097 0.18 -0.4
4,777,521 - Pf6N2E2_4097 0.18 +0.4
4,777,681 + Pf6N2E2_4097 0.42 +0.4
4,777,681 + Pf6N2E2_4097 0.42 +0.4
4,777,681 + Pf6N2E2_4097 0.42 +0.1
4,777,681 + Pf6N2E2_4097 0.42 -0.1
4,777,681 + Pf6N2E2_4097 0.42 -0.0
4,777,681 + Pf6N2E2_4097 0.42 +1.0
4,777,681 + Pf6N2E2_4097 0.42 -0.1
4,777,681 + Pf6N2E2_4097 0.42 +1.1
4,777,682 - Pf6N2E2_4097 0.42 +0.5
4,777,682 - Pf6N2E2_4097 0.42 +0.9
4,777,682 - Pf6N2E2_4097 0.42 +0.9
4,777,683 + Pf6N2E2_4097 0.43 +0.7
4,777,683 + Pf6N2E2_4097 0.43 +0.3
4,777,683 + Pf6N2E2_4097 0.43 -0.5
4,777,683 + Pf6N2E2_4097 0.43 +0.3
4,777,683 + Pf6N2E2_4097 0.43 -0.7
4,777,683 + Pf6N2E2_4097 0.43 +0.6
4,777,683 + Pf6N2E2_4097 0.43 +0.4
4,777,684 - Pf6N2E2_4097 0.43 +0.6
4,777,684 - Pf6N2E2_4097 0.43 -0.1
4,777,684 - Pf6N2E2_4097 0.43 +0.9
4,777,684 - Pf6N2E2_4097 0.43 +0.0
4,777,684 - Pf6N2E2_4097 0.43 +0.2
4,777,684 - Pf6N2E2_4097 0.43 -0.2
4,777,684 - Pf6N2E2_4097 0.43 +0.3
4,777,684 - Pf6N2E2_4097 0.43 +0.5
4,777,684 - Pf6N2E2_4097 0.43 +0.9
4,777,722 + Pf6N2E2_4097 0.49 +0.6
4,777,722 + Pf6N2E2_4097 0.49 -0.3
4,777,788 + Pf6N2E2_4097 0.59 -0.3
4,777,788 + Pf6N2E2_4097 0.59 +0.6
4,777,789 - Pf6N2E2_4097 0.59 +0.4
4,777,789 - Pf6N2E2_4097 0.59 +0.5
4,777,789 - Pf6N2E2_4097 0.59 -0.6
4,777,878 - Pf6N2E2_4097 0.73 -1.0
4,777,878 - Pf6N2E2_4097 0.73 +0.3
4,777,890 + Pf6N2E2_4097 0.74 +0.1
4,777,890 + Pf6N2E2_4097 0.74 -1.2
4,777,890 + Pf6N2E2_4097 0.74 +0.6
4,777,891 - Pf6N2E2_4097 0.75 -0.6
4,778,087 - +0.1
4,778,087 - +0.5
4,778,097 + +0.6
4,778,097 + +0.8
4,778,098 - +0.4
4,778,098 - -0.1
4,778,098 - +0.1
4,778,098 - +0.7
4,778,102 + +0.3
4,778,102 + +0.9
4,778,102 + -0.1
4,778,102 + +0.2
4,778,102 + -1.1
4,778,102 + +0.6
4,778,102 + +0.9
4,778,102 + +1.0
4,778,102 + +0.3
4,778,102 + +0.6
4,778,102 + +0.0
4,778,102 + +0.1
4,778,103 - +0.2
4,778,103 - +0.6
4,778,103 - +0.0
4,778,103 - -0.7
4,778,103 - +1.3
4,778,103 - +2.1
4,778,103 - -0.0
4,778,103 - +1.2
4,778,103 - +1.6
4,778,123 + +0.7
4,778,123 + +0.5
4,778,123 + -0.2
4,778,123 + +0.5
4,778,124 - +0.6
4,778,130 + -0.3
4,778,157 + +0.0
4,778,218 + +0.5

Or see this region's nucleotide sequence