Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4084

Experiment: Cadmium chloride hemipentahydrate 0.000015625 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_4082 and Pf6N2E2_4083 are separated by 9 nucleotidesPf6N2E2_4083 and Pf6N2E2_4084 are separated by 385 nucleotidesPf6N2E2_4084 and Pf6N2E2_4085 are separated by 167 nucleotides Pf6N2E2_4082 - Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21), at 4,758,994 to 4,759,416 _4082 Pf6N2E2_4083 - hypothetical protein, at 4,759,426 to 4,759,626 _4083 Pf6N2E2_4084 - Transcriptional regulator, at 4,760,012 to 4,760,929 _4084 Pf6N2E2_4085 - Aspartate ammonia-lyase (EC 4.3.1.1), at 4,761,097 to 4,762,533 _4085 Position (kb) 4760 4761Strain fitness (log2 ratio) -2 -1 0 1at 4759.566 kb on - strand, within Pf6N2E2_4083at 4759.606 kb on - strand, within Pf6N2E2_4083at 4759.606 kb on - strand, within Pf6N2E2_4083at 4759.606 kb on - strand, within Pf6N2E2_4083at 4759.606 kb on - strand, within Pf6N2E2_4083at 4759.606 kb on - strand, within Pf6N2E2_4083at 4759.673 kb on + strandat 4759.674 kb on - strandat 4759.905 kb on + strandat 4759.905 kb on + strandat 4759.905 kb on + strandat 4760.256 kb on + strand, within Pf6N2E2_4084at 4760.257 kb on - strandat 4760.257 kb on - strand, within Pf6N2E2_4084at 4760.332 kb on - strand, within Pf6N2E2_4084at 4760.481 kb on + strand, within Pf6N2E2_4084at 4760.481 kb on + strand, within Pf6N2E2_4084at 4760.482 kb on - strand, within Pf6N2E2_4084at 4760.482 kb on - strand, within Pf6N2E2_4084at 4760.482 kb on - strand, within Pf6N2E2_4084at 4760.645 kb on + strand, within Pf6N2E2_4084at 4760.645 kb on + strand, within Pf6N2E2_4084at 4760.645 kb on + strand, within Pf6N2E2_4084at 4760.645 kb on + strand, within Pf6N2E2_4084at 4760.645 kb on + strand, within Pf6N2E2_4084at 4760.646 kb on - strand, within Pf6N2E2_4084at 4760.646 kb on - strand, within Pf6N2E2_4084at 4760.646 kb on - strand, within Pf6N2E2_4084at 4760.646 kb on - strand, within Pf6N2E2_4084at 4761.039 kb on - strandat 4761.179 kb on - strandat 4761.502 kb on + strand, within Pf6N2E2_4085

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium chloride hemipentahydrate 0.000015625 M
remove
4,759,566 - Pf6N2E2_4083 0.70 +1.3
4,759,606 - Pf6N2E2_4083 0.90 +0.7
4,759,606 - Pf6N2E2_4083 0.90 +0.3
4,759,606 - Pf6N2E2_4083 0.90 -0.1
4,759,606 - Pf6N2E2_4083 0.90 -0.6
4,759,606 - Pf6N2E2_4083 0.90 +0.6
4,759,673 + -0.8
4,759,674 - -0.5
4,759,905 + +1.4
4,759,905 + -0.5
4,759,905 + -1.0
4,760,256 + Pf6N2E2_4084 0.27 -1.6
4,760,257 - -0.3
4,760,257 - Pf6N2E2_4084 0.27 -0.9
4,760,332 - Pf6N2E2_4084 0.35 -2.4
4,760,481 + Pf6N2E2_4084 0.51 -1.1
4,760,481 + Pf6N2E2_4084 0.51 -1.2
4,760,482 - Pf6N2E2_4084 0.51 +0.5
4,760,482 - Pf6N2E2_4084 0.51 -1.2
4,760,482 - Pf6N2E2_4084 0.51 -0.6
4,760,645 + Pf6N2E2_4084 0.69 -0.7
4,760,645 + Pf6N2E2_4084 0.69 -1.7
4,760,645 + Pf6N2E2_4084 0.69 -1.7
4,760,645 + Pf6N2E2_4084 0.69 -0.8
4,760,645 + Pf6N2E2_4084 0.69 -0.3
4,760,646 - Pf6N2E2_4084 0.69 -0.4
4,760,646 - Pf6N2E2_4084 0.69 -0.9
4,760,646 - Pf6N2E2_4084 0.69 -0.4
4,760,646 - Pf6N2E2_4084 0.69 -1.0
4,761,039 - -0.3
4,761,179 - -0.5
4,761,502 + Pf6N2E2_4085 0.28 +0.5

Or see this region's nucleotide sequence