Experiment: Cadmium chloride hemipentahydrate 0.000015625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_21 and Pf6N2E2_22 are separated by 145 nucleotides Pf6N2E2_22 and Pf6N2E2_23 are separated by 275 nucleotides
Pf6N2E2_21 - Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis, at 56,134 to 56,616
_21
Pf6N2E2_22 - L-ornithine 5-monooxygenase (EC 1.13.12.-), PvdA of pyoverdin biosynthesis, at 56,762 to 58,096
_22
Pf6N2E2_23 - Hybrid sensory histidine kinase in two-component regulatory system with EvgA, at 58,372 to 61,572
_23
Position (kb) 56
57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2 at 55.762 kb on - strand at 55.762 kb on - strand at 55.762 kb on - strand at 55.773 kb on + strand at 55.774 kb on - strand at 55.836 kb on + strand at 55.845 kb on + strand at 55.845 kb on + strand at 55.916 kb on + strand at 55.917 kb on - strand at 55.917 kb on - strand at 55.917 kb on - strand at 55.917 kb on - strand at 55.935 kb on + strand at 55.935 kb on + strand at 55.935 kb on + strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.944 kb on + strand at 55.944 kb on + strand at 55.945 kb on - strand at 55.997 kb on + strand at 55.998 kb on - strand at 56.021 kb on - strand at 56.029 kb on + strand at 56.104 kb on + strand at 56.104 kb on + strand at 56.146 kb on + strand at 56.147 kb on - strand at 56.147 kb on - strand at 56.224 kb on + strand, within Pf6N2E2_21 at 56.224 kb on + strand, within Pf6N2E2_21 at 56.225 kb on - strand, within Pf6N2E2_21 at 56.225 kb on - strand, within Pf6N2E2_21 at 56.284 kb on + strand, within Pf6N2E2_21 at 56.284 kb on + strand, within Pf6N2E2_21 at 56.328 kb on + strand, within Pf6N2E2_21 at 56.329 kb on - strand, within Pf6N2E2_21 at 56.614 kb on + strand at 56.614 kb on + strand at 56.624 kb on - strand at 57.017 kb on + strand, within Pf6N2E2_22 at 57.068 kb on + strand, within Pf6N2E2_22 at 57.095 kb on + strand, within Pf6N2E2_22 at 57.096 kb on - strand, within Pf6N2E2_22 at 57.234 kb on + strand, within Pf6N2E2_22 at 57.235 kb on - strand, within Pf6N2E2_22 at 57.235 kb on - strand, within Pf6N2E2_22 at 57.238 kb on + strand, within Pf6N2E2_22 at 57.238 kb on + strand, within Pf6N2E2_22 at 57.238 kb on + strand, within Pf6N2E2_22 at 57.238 kb on + strand, within Pf6N2E2_22 at 57.239 kb on - strand, within Pf6N2E2_22 at 57.338 kb on + strand, within Pf6N2E2_22 at 57.339 kb on - strand, within Pf6N2E2_22 at 57.614 kb on + strand, within Pf6N2E2_22 at 57.614 kb on + strand, within Pf6N2E2_22 at 57.614 kb on + strand, within Pf6N2E2_22 at 57.615 kb on - strand, within Pf6N2E2_22 at 57.615 kb on - strand, within Pf6N2E2_22 at 57.615 kb on - strand, within Pf6N2E2_22 at 57.650 kb on + strand, within Pf6N2E2_22 at 57.712 kb on + strand, within Pf6N2E2_22 at 57.712 kb on + strand, within Pf6N2E2_22 at 57.713 kb on - strand, within Pf6N2E2_22 at 57.899 kb on + strand, within Pf6N2E2_22 at 57.899 kb on + strand, within Pf6N2E2_22 at 57.899 kb on + strand, within Pf6N2E2_22 at 57.899 kb on + strand, within Pf6N2E2_22 at 57.900 kb on - strand, within Pf6N2E2_22 at 57.938 kb on + strand, within Pf6N2E2_22 at 57.938 kb on + strand, within Pf6N2E2_22 at 57.938 kb on + strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.980 kb on - strand at 58.031 kb on + strand at 58.031 kb on + strand at 58.031 kb on + strand at 58.032 kb on - strand at 58.032 kb on - strand at 58.092 kb on + strand at 58.093 kb on - strand at 58.094 kb on + strand at 58.094 kb on + strand at 58.095 kb on - strand at 58.095 kb on - strand at 58.129 kb on + strand at 58.129 kb on + strand at 58.130 kb on - strand at 58.222 kb on + strand at 58.277 kb on + strand at 58.277 kb on + strand at 58.277 kb on + strand at 58.317 kb on + strand at 58.317 kb on + strand at 58.317 kb on + strand at 58.317 kb on + strand at 58.317 kb on + strand at 58.317 kb on + strand at 58.317 kb on + strand at 58.318 kb on - strand at 58.318 kb on - strand at 58.318 kb on - strand at 58.318 kb on - strand at 58.318 kb on - strand at 58.492 kb on + strand at 58.610 kb on - strand at 58.610 kb on - strand at 58.630 kb on + strand at 58.818 kb on - strand, within Pf6N2E2_23 at 58.883 kb on - strand, within Pf6N2E2_23 at 58.883 kb on - strand, within Pf6N2E2_23 at 58.883 kb on - strand, within Pf6N2E2_23 at 58.888 kb on + strand, within Pf6N2E2_23 at 58.889 kb on - strand, within Pf6N2E2_23 at 58.889 kb on - strand, within Pf6N2E2_23 at 58.997 kb on - strand, within Pf6N2E2_23 at 59.023 kb on + strand, within Pf6N2E2_23 at 59.024 kb on - strand, within Pf6N2E2_23 at 59.041 kb on + strand, within Pf6N2E2_23 at 59.052 kb on + strand, within Pf6N2E2_23 at 59.052 kb on + strand, within Pf6N2E2_23 at 59.053 kb on - strand, within Pf6N2E2_23
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium chloride hemipentahydrate 0.000015625 M remove 55,762 - +0.0 55,762 - -0.5 55,762 - +0.9 55,773 + -1.6 55,774 - +0.1 55,836 + -0.2 55,845 + +0.4 55,845 + +0.5 55,916 + -0.4 55,917 - -0.9 55,917 - -0.8 55,917 - +0.4 55,917 - -0.3 55,935 + -0.6 55,935 + +0.4 55,935 + -0.3 55,936 - -1.4 55,936 - -0.7 55,936 - -0.3 55,936 - -1.0 55,936 - -0.0 55,936 - +0.0 55,936 - +0.4 55,944 + -0.2 55,944 + -0.9 55,945 - -1.4 55,997 + -0.2 55,998 - -1.3 56,021 - -0.6 56,029 + -0.9 56,104 + -0.1 56,104 + +0.6 56,146 + -0.2 56,147 - -1.7 56,147 - -0.1 56,224 + Pf6N2E2_21 0.19 +2.4 56,224 + Pf6N2E2_21 0.19 +0.7 56,225 - Pf6N2E2_21 0.19 +0.4 56,225 - Pf6N2E2_21 0.19 +0.4 56,284 + Pf6N2E2_21 0.31 -0.5 56,284 + Pf6N2E2_21 0.31 -1.7 56,328 + Pf6N2E2_21 0.40 +0.1 56,329 - Pf6N2E2_21 0.40 -0.6 56,614 + -0.0 56,614 + -0.1 56,624 - -0.2 57,017 + Pf6N2E2_22 0.19 -0.1 57,068 + Pf6N2E2_22 0.23 -0.6 57,095 + Pf6N2E2_22 0.25 -1.2 57,096 - Pf6N2E2_22 0.25 -0.7 57,234 + Pf6N2E2_22 0.35 -0.6 57,235 - Pf6N2E2_22 0.35 -1.5 57,235 - Pf6N2E2_22 0.35 -0.3 57,238 + Pf6N2E2_22 0.36 -0.3 57,238 + Pf6N2E2_22 0.36 -0.9 57,238 + Pf6N2E2_22 0.36 -1.0 57,238 + Pf6N2E2_22 0.36 -0.4 57,239 - Pf6N2E2_22 0.36 +0.9 57,338 + Pf6N2E2_22 0.43 +0.8 57,339 - Pf6N2E2_22 0.43 -0.5 57,614 + Pf6N2E2_22 0.64 +1.4 57,614 + Pf6N2E2_22 0.64 -0.8 57,614 + Pf6N2E2_22 0.64 +0.2 57,615 - Pf6N2E2_22 0.64 -0.9 57,615 - Pf6N2E2_22 0.64 +0.8 57,615 - Pf6N2E2_22 0.64 +0.4 57,650 + Pf6N2E2_22 0.67 -0.5 57,712 + Pf6N2E2_22 0.71 -1.2 57,712 + Pf6N2E2_22 0.71 -0.7 57,713 - Pf6N2E2_22 0.71 -0.7 57,899 + Pf6N2E2_22 0.85 -0.6 57,899 + Pf6N2E2_22 0.85 -0.4 57,899 + Pf6N2E2_22 0.85 -0.6 57,899 + Pf6N2E2_22 0.85 +1.0 57,900 - Pf6N2E2_22 0.85 -0.2 57,938 + Pf6N2E2_22 0.88 -0.1 57,938 + Pf6N2E2_22 0.88 -0.7 57,938 + Pf6N2E2_22 0.88 -0.5 57,939 - Pf6N2E2_22 0.88 +0.4 57,939 - Pf6N2E2_22 0.88 -1.1 57,939 - Pf6N2E2_22 0.88 -0.2 57,939 - Pf6N2E2_22 0.88 +0.3 57,939 - Pf6N2E2_22 0.88 +0.0 57,939 - Pf6N2E2_22 0.88 +0.0 57,939 - Pf6N2E2_22 0.88 -0.5 57,980 - -0.1 58,031 + +0.8 58,031 + -0.3 58,031 + +0.7 58,032 - -0.2 58,032 - +0.8 58,092 + -1.2 58,093 - -0.2 58,094 + +0.4 58,094 + -0.5 58,095 - +0.2 58,095 - -0.6 58,129 + -1.5 58,129 + -1.8 58,130 - -0.3 58,222 + -0.2 58,277 + -1.0 58,277 + +0.4 58,277 + -0.3 58,317 + -0.3 58,317 + -0.2 58,317 + -0.1 58,317 + +0.1 58,317 + +0.2 58,317 + +0.8 58,317 + -1.2 58,318 - +0.2 58,318 - -0.0 58,318 - +0.6 58,318 - -0.7 58,318 - -0.2 58,492 + +0.5 58,610 - +0.2 58,610 - -0.4 58,630 + +0.4 58,818 - Pf6N2E2_23 0.14 -1.0 58,883 - Pf6N2E2_23 0.16 -0.5 58,883 - Pf6N2E2_23 0.16 +0.1 58,883 - Pf6N2E2_23 0.16 +0.5 58,888 + Pf6N2E2_23 0.16 +1.4 58,889 - Pf6N2E2_23 0.16 -0.3 58,889 - Pf6N2E2_23 0.16 -0.0 58,997 - Pf6N2E2_23 0.20 -1.5 59,023 + Pf6N2E2_23 0.20 +0.3 59,024 - Pf6N2E2_23 0.20 -0.5 59,041 + Pf6N2E2_23 0.21 -0.3 59,052 + Pf6N2E2_23 0.21 +0.3 59,052 + Pf6N2E2_23 0.21 -0.5 59,053 - Pf6N2E2_23 0.21 +0.7
Or see this region's nucleotide sequence