Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_184

Experiment: Cadmium chloride hemipentahydrate 0.000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_183 and Pf6N2E2_184 are separated by 110 nucleotidesPf6N2E2_184 and Pf6N2E2_185 are separated by 10 nucleotides Pf6N2E2_183 - Urea ABC transporter, urea binding protein, at 235,682 to 236,926 _183 Pf6N2E2_184 - Urea ABC transporter, permease protein UrtB, at 237,037 to 237,954 _184 Pf6N2E2_185 - Urea ABC transporter, permease protein UrtC, at 237,965 to 239,152 _185 Position (kb) 237 238Strain fitness (log2 ratio) -3 -2 -1 0 1at 236.121 kb on - strand, within Pf6N2E2_183at 236.121 kb on - strand, within Pf6N2E2_183at 236.135 kb on + strand, within Pf6N2E2_183at 236.136 kb on - strand, within Pf6N2E2_183at 236.136 kb on - strand, within Pf6N2E2_183at 236.168 kb on + strand, within Pf6N2E2_183at 236.169 kb on - strand, within Pf6N2E2_183at 236.169 kb on - strand, within Pf6N2E2_183at 236.246 kb on + strand, within Pf6N2E2_183at 236.246 kb on + strand, within Pf6N2E2_183at 236.247 kb on - strand, within Pf6N2E2_183at 236.247 kb on - strand, within Pf6N2E2_183at 236.247 kb on - strand, within Pf6N2E2_183at 236.264 kb on + strand, within Pf6N2E2_183at 236.264 kb on + strand, within Pf6N2E2_183at 236.264 kb on + strand, within Pf6N2E2_183at 236.264 kb on + strand, within Pf6N2E2_183at 236.264 kb on + strand, within Pf6N2E2_183at 236.264 kb on + strand, within Pf6N2E2_183at 236.265 kb on - strand, within Pf6N2E2_183at 236.265 kb on - strand, within Pf6N2E2_183at 236.265 kb on - strand, within Pf6N2E2_183at 236.266 kb on + strand, within Pf6N2E2_183at 236.266 kb on + strand, within Pf6N2E2_183at 236.267 kb on - strand, within Pf6N2E2_183at 236.267 kb on - strand, within Pf6N2E2_183at 236.267 kb on - strand, within Pf6N2E2_183at 236.345 kb on + strand, within Pf6N2E2_183at 236.345 kb on + strand, within Pf6N2E2_183at 236.345 kb on + strand, within Pf6N2E2_183at 236.345 kb on + strand, within Pf6N2E2_183at 236.346 kb on - strand, within Pf6N2E2_183at 236.346 kb on - strand, within Pf6N2E2_183at 236.453 kb on + strand, within Pf6N2E2_183at 236.453 kb on + strand, within Pf6N2E2_183at 236.453 kb on + strand, within Pf6N2E2_183at 236.453 kb on + strand, within Pf6N2E2_183at 236.454 kb on - strand, within Pf6N2E2_183at 236.564 kb on + strand, within Pf6N2E2_183at 236.565 kb on - strand, within Pf6N2E2_183at 236.565 kb on - strand, within Pf6N2E2_183at 236.565 kb on - strand, within Pf6N2E2_183at 236.639 kb on + strandat 236.793 kb on - strand, within Pf6N2E2_183at 236.876 kb on + strandat 236.877 kb on - strandat 236.924 kb on + strandat 236.925 kb on - strandat 237.199 kb on + strand, within Pf6N2E2_184at 237.208 kb on + strand, within Pf6N2E2_184at 237.208 kb on + strand, within Pf6N2E2_184at 237.208 kb on + strand, within Pf6N2E2_184at 237.208 kb on + strand, within Pf6N2E2_184at 237.208 kb on + strand, within Pf6N2E2_184at 237.208 kb on + strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.257 kb on - strand, within Pf6N2E2_184at 237.260 kb on - strand, within Pf6N2E2_184at 237.260 kb on - strand, within Pf6N2E2_184at 237.343 kb on + strand, within Pf6N2E2_184at 237.390 kb on - strand, within Pf6N2E2_184at 237.563 kb on - strand, within Pf6N2E2_184at 237.745 kb on + strand, within Pf6N2E2_184at 237.745 kb on + strand, within Pf6N2E2_184at 237.746 kb on - strand, within Pf6N2E2_184at 237.746 kb on - strand, within Pf6N2E2_184at 237.746 kb on - strand, within Pf6N2E2_184at 237.746 kb on - strand, within Pf6N2E2_184at 237.750 kb on - strand, within Pf6N2E2_184at 237.750 kb on - strand, within Pf6N2E2_184at 237.750 kb on - strand, within Pf6N2E2_184at 237.750 kb on - strand, within Pf6N2E2_184at 237.804 kb on + strand, within Pf6N2E2_184at 237.805 kb on - strand, within Pf6N2E2_184at 237.805 kb on - strand, within Pf6N2E2_184at 237.805 kb on - strand, within Pf6N2E2_184at 237.953 kb on - strandat 237.953 kb on - strandat 238.091 kb on + strand, within Pf6N2E2_185at 238.092 kb on - strand, within Pf6N2E2_185at 238.100 kb on + strand, within Pf6N2E2_185at 238.100 kb on + strand, within Pf6N2E2_185at 238.100 kb on + strand, within Pf6N2E2_185at 238.101 kb on - strand, within Pf6N2E2_185at 238.101 kb on - strand, within Pf6N2E2_185at 238.366 kb on - strand, within Pf6N2E2_185at 238.421 kb on + strand, within Pf6N2E2_185at 238.421 kb on + strand, within Pf6N2E2_185at 238.422 kb on - strand, within Pf6N2E2_185at 238.422 kb on - strand, within Pf6N2E2_185at 238.877 kb on + strand, within Pf6N2E2_185at 238.877 kb on + strand, within Pf6N2E2_185at 238.898 kb on + strand, within Pf6N2E2_185at 238.899 kb on - strand, within Pf6N2E2_185at 238.910 kb on + strand, within Pf6N2E2_185at 238.911 kb on - strand, within Pf6N2E2_185at 238.911 kb on - strand, within Pf6N2E2_185at 238.944 kb on - strand, within Pf6N2E2_185

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium chloride hemipentahydrate 0.000015625 M
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236,121 - Pf6N2E2_183 0.35 -0.1
236,121 - Pf6N2E2_183 0.35 -1.2
236,135 + Pf6N2E2_183 0.36 +0.6
236,136 - Pf6N2E2_183 0.36 +0.2
236,136 - Pf6N2E2_183 0.36 -1.2
236,168 + Pf6N2E2_183 0.39 -0.2
236,169 - Pf6N2E2_183 0.39 +0.7
236,169 - Pf6N2E2_183 0.39 -0.1
236,246 + Pf6N2E2_183 0.45 +0.4
236,246 + Pf6N2E2_183 0.45 -1.7
236,247 - Pf6N2E2_183 0.45 -0.7
236,247 - Pf6N2E2_183 0.45 +0.4
236,247 - Pf6N2E2_183 0.45 +0.4
236,264 + Pf6N2E2_183 0.47 +0.5
236,264 + Pf6N2E2_183 0.47 -1.1
236,264 + Pf6N2E2_183 0.47 -0.3
236,264 + Pf6N2E2_183 0.47 -0.4
236,264 + Pf6N2E2_183 0.47 +0.0
236,264 + Pf6N2E2_183 0.47 +0.2
236,265 - Pf6N2E2_183 0.47 +0.4
236,265 - Pf6N2E2_183 0.47 +0.4
236,265 - Pf6N2E2_183 0.47 -0.7
236,266 + Pf6N2E2_183 0.47 -0.0
236,266 + Pf6N2E2_183 0.47 -1.2
236,267 - Pf6N2E2_183 0.47 +0.1
236,267 - Pf6N2E2_183 0.47 +0.6
236,267 - Pf6N2E2_183 0.47 +0.3
236,345 + Pf6N2E2_183 0.53 +0.9
236,345 + Pf6N2E2_183 0.53 -0.5
236,345 + Pf6N2E2_183 0.53 +0.6
236,345 + Pf6N2E2_183 0.53 +0.4
236,346 - Pf6N2E2_183 0.53 +0.0
236,346 - Pf6N2E2_183 0.53 +0.2
236,453 + Pf6N2E2_183 0.62 -0.3
236,453 + Pf6N2E2_183 0.62 -0.0
236,453 + Pf6N2E2_183 0.62 -0.6
236,453 + Pf6N2E2_183 0.62 -0.3
236,454 - Pf6N2E2_183 0.62 -0.4
236,564 + Pf6N2E2_183 0.71 -0.2
236,565 - Pf6N2E2_183 0.71 -0.2
236,565 - Pf6N2E2_183 0.71 -0.7
236,565 - Pf6N2E2_183 0.71 +1.2
236,639 + -0.6
236,793 - Pf6N2E2_183 0.89 -0.2
236,876 + +0.6
236,877 - +0.2
236,924 + +0.1
236,925 - +0.1
237,199 + Pf6N2E2_184 0.18 -1.9
237,208 + Pf6N2E2_184 0.19 -0.2
237,208 + Pf6N2E2_184 0.19 -1.3
237,208 + Pf6N2E2_184 0.19 -0.6
237,208 + Pf6N2E2_184 0.19 -0.5
237,208 + Pf6N2E2_184 0.19 +1.5
237,208 + Pf6N2E2_184 0.19 -0.7
237,209 - Pf6N2E2_184 0.19 +0.1
237,209 - Pf6N2E2_184 0.19 -0.0
237,209 - Pf6N2E2_184 0.19 -1.6
237,209 - Pf6N2E2_184 0.19 -0.1
237,209 - Pf6N2E2_184 0.19 +0.1
237,209 - Pf6N2E2_184 0.19 -0.5
237,209 - Pf6N2E2_184 0.19 -0.4
237,209 - Pf6N2E2_184 0.19 -0.8
237,209 - Pf6N2E2_184 0.19 +0.4
237,209 - Pf6N2E2_184 0.19 -1.2
237,209 - Pf6N2E2_184 0.19 -0.6
237,209 - Pf6N2E2_184 0.19 -0.1
237,209 - Pf6N2E2_184 0.19 -0.4
237,209 - Pf6N2E2_184 0.19 -0.0
237,257 - Pf6N2E2_184 0.24 -0.4
237,260 - Pf6N2E2_184 0.24 +0.5
237,260 - Pf6N2E2_184 0.24 -0.1
237,343 + Pf6N2E2_184 0.33 +0.1
237,390 - Pf6N2E2_184 0.38 +0.5
237,563 - Pf6N2E2_184 0.57 -0.2
237,745 + Pf6N2E2_184 0.77 +0.0
237,745 + Pf6N2E2_184 0.77 +0.0
237,746 - Pf6N2E2_184 0.77 +0.2
237,746 - Pf6N2E2_184 0.77 +0.3
237,746 - Pf6N2E2_184 0.77 +0.6
237,746 - Pf6N2E2_184 0.77 -0.9
237,750 - Pf6N2E2_184 0.78 -0.9
237,750 - Pf6N2E2_184 0.78 -0.2
237,750 - Pf6N2E2_184 0.78 -2.1
237,750 - Pf6N2E2_184 0.78 -0.4
237,804 + Pf6N2E2_184 0.84 +1.1
237,805 - Pf6N2E2_184 0.84 -0.7
237,805 - Pf6N2E2_184 0.84 -2.9
237,805 - Pf6N2E2_184 0.84 +0.1
237,953 - -0.6
237,953 - +0.1
238,091 + Pf6N2E2_185 0.11 -0.7
238,092 - Pf6N2E2_185 0.11 +0.9
238,100 + Pf6N2E2_185 0.11 +0.4
238,100 + Pf6N2E2_185 0.11 +0.7
238,100 + Pf6N2E2_185 0.11 -0.2
238,101 - Pf6N2E2_185 0.11 +0.6
238,101 - Pf6N2E2_185 0.11 +1.1
238,366 - Pf6N2E2_185 0.34 +0.5
238,421 + Pf6N2E2_185 0.38 -0.2
238,421 + Pf6N2E2_185 0.38 -0.1
238,422 - Pf6N2E2_185 0.38 -0.0
238,422 - Pf6N2E2_185 0.38 +0.4
238,877 + Pf6N2E2_185 0.77 +0.5
238,877 + Pf6N2E2_185 0.77 -0.3
238,898 + Pf6N2E2_185 0.79 -0.0
238,899 - Pf6N2E2_185 0.79 -3.6
238,910 + Pf6N2E2_185 0.80 -0.8
238,911 - Pf6N2E2_185 0.80 +0.4
238,911 - Pf6N2E2_185 0.80 -0.1
238,944 - Pf6N2E2_185 0.82 -0.6

Or see this region's nucleotide sequence